RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 DUOX1Q9NRD9 1551 aa21.07■□□□□ 0.96
TRIM54-203ENST00000485306 CNTROBQ8N137 903 aa21.07■□□□□ 0.96
TRIM54-203ENST00000485306 ADARB2Q9NS39 739 aaKnown RBP21.07■□□□□ 0.96
TRIM54-203ENST00000485306 GGA1Q9UJY5 639 aa21.07■□□□□ 0.96
TRIM54-203ENST00000485306 PASKQ96RG2 1323 aa21.06■□□□□ 0.96
TRIM54-203ENST00000485306 ITGBL1O95965 494 aaPredicted RBP21.06■□□□□ 0.96
TRIM54-203ENST00000485306 GMPSP49915 693 aaPredicted RBP21.06■□□□□ 0.96
TRIM54-203ENST00000485306 UFL1O94874 794 aa21.05■□□□□ 0.96
TRIM54-203ENST00000485306 MAP1SQ66K74 1059 aaPredicted RBP21.05■□□□□ 0.96
TRIM54-203ENST00000485306 JMYQ8N9B5 988 aa21.05■□□□□ 0.96
TRIM54-203ENST00000485306 PLA2G12BQ9BX93 195 aa21.05■□□□□ 0.96
TRIM54-203ENST00000485306 GREM2Q9H772 168 aa21.05■□□□□ 0.96
TRIM54-203ENST00000485306 DBNDD1Q9H9R9 158 aa21.05■□□□□ 0.96
TRIM54-203ENST00000485306 COL4A1P02462 1669 aa21.05■□□□□ 0.96
TRIM54-203ENST00000485306 ADAMTSL1Q8N6G6 1762 aa21.05■□□□□ 0.96
TRIM54-203ENST00000485306 XDHP47989 1333 aa21.04■□□□□ 0.96
TRIM54-203ENST00000485306 YDJCA8MPS7 323 aa21.04■□□□□ 0.96
TRIM54-203ENST00000485306 CT47B1P0C2W7 299 aaPredicted RBP21.04■□□□□ 0.96
TRIM54-203ENST00000485306 BSDC1Q9NW68 430 aaPredicted RBP21.04■□□□□ 0.96
TRIM54-203ENST00000485306 RTL9Q8NET4 1388 aa21.04■□□□□ 0.96
TRIM54-203ENST00000485306 LTBP1Q14766 1721 aa21.04■□□□□ 0.96
TRIM54-203ENST00000485306 TMEM88BA6NKF7 163 aa21.03■□□□□ 0.96
TRIM54-203ENST00000485306 F6X3S4 739 aa21.03■□□□□ 0.96
TRIM54-203ENST00000485306 H7C1D1 291 aa21.03■□□□□ 0.96
TRIM54-203ENST00000485306 ECE2O60344 883 aa21.03■□□□□ 0.96
TRIM54-203ENST00000485306 ATP2B4P23634 1241 aa21.03■□□□□ 0.96
TRIM54-203ENST00000485306 IGHMBP2P38935 993 aaKnown RBP21.03■□□□□ 0.96
TRIM54-203ENST00000485306 DOK7Q18PE1 504 aa21.03■□□□□ 0.96
TRIM54-203ENST00000485306 BEND3Q5T5X7 828 aa21.02■□□□□ 0.96
TRIM54-203ENST00000485306 MRPL50Q8N5N7 158 aaKnown RBP21.02■□□□□ 0.96
TRIM54-203ENST00000485306 CNOT7Q9UIV1 285 aaKnown RBP21.02■□□□□ 0.96
TRIM54-203ENST00000485306 PSMD14O00487 310 aa21.01■□□□□ 0.95
TRIM54-203ENST00000485306 CSF1RP07333 972 aa21.01■□□□□ 0.95
TRIM54-203ENST00000485306 CASP7P55210 303 aa21.01■□□□□ 0.95
TRIM54-203ENST00000485306 DPF2Q92785 391 aa21.01■□□□□ 0.95
TRIM54-203ENST00000485306 GPR101Q96P66 508 aaPredicted RBP21.01■□□□□ 0.95
TRIM54-203ENST00000485306 MPHOSPH8Q99549 860 aa21.01■□□□□ 0.95
TRIM54-203ENST00000485306 MINPP1Q9UNW1 487 aa21.01■□□□□ 0.95
TRIM54-203ENST00000485306 ITGA6P23229 1130 aa21■□□□□ 0.95
TRIM54-203ENST00000485306 RPS12P25398 132 aaKnown RBP21■□□□□ 0.95
TRIM54-203ENST00000485306 SLC4A10Q6U841 1118 aa21■□□□□ 0.95
TRIM54-203ENST00000485306 SSH1Q8WYL5 1049 aa20.99■□□□□ 0.95
TRIM54-203ENST00000485306 C9orf78Q9NZ63 289 aaPredicted RBP20.99■□□□□ 0.95
TRIM54-203ENST00000485306 ANKRD18BA2A2Z9 1011 aa20.98■□□□□ 0.95
TRIM54-203ENST00000485306 ALDH1L1O75891 902 aa20.98■□□□□ 0.95
TRIM54-203ENST00000485306 MICALL2Q8IY33 904 aa20.98■□□□□ 0.95
TRIM54-203ENST00000485306 ZC3H15Q8WU90 426 aaKnown RBP20.98■□□□□ 0.95
TRIM54-203ENST00000485306 SRCIN1Q9C0H9 1055 aa20.98■□□□□ 0.95
TRIM54-203ENST00000485306 ANKRD2Q9GZV1 360 aa20.98■□□□□ 0.95
TRIM54-203ENST00000485306 MKRN1Q9UHC7 482 aaKnown RBP20.98■□□□□ 0.95
TRIM54-203ENST00000485306 ZBTB12Q9Y330 459 aaPredicted RBP20.98■□□□□ 0.95
TRIM54-203ENST00000485306 GRM8O00222 908 aa20.97■□□□□ 0.95
TRIM54-203ENST00000485306 FAM161AQ3B820 660 aa20.97■□□□□ 0.95
TRIM54-203ENST00000485306 ALDH1L2Q3SY69 923 aa20.97■□□□□ 0.95
TRIM54-203ENST00000485306 KCNQ5Q9NR82 932 aa20.97■□□□□ 0.95
TRIM54-203ENST00000485306 LEMD3Q9Y2U8 911 aa20.97■□□□□ 0.95
TRIM54-203ENST00000485306 SPEF2Q9C093 1822 aa20.97■□□□□ 0.95
TRIM54-203ENST00000485306 VIL1P09327 827 aaKnown RBP20.96■□□□□ 0.95
TRIM54-203ENST00000485306 CCT4P50991 539 aaKnown RBP20.96■□□□□ 0.95
TRIM54-203ENST00000485306 IFIT5Q13325 482 aaKnown RBP20.96■□□□□ 0.95
TRIM54-203ENST00000485306 PODNQ7Z5L7 613 aa20.96■□□□□ 0.95
TRIM54-203ENST00000485306 PGAP2Q9UHJ9 254 aa20.96■□□□□ 0.95
TRIM54-203ENST00000485306 CHMP3Q9Y3E7 222 aa20.96■□□□□ 0.95
TRIM54-203ENST00000485306 FOXO4P98177 505 aa20.95■□□□□ 0.94
TRIM54-203ENST00000485306 PTPRCP08575 1304 aa20.95■□□□□ 0.94
TRIM54-203ENST00000485306 SMC4Q9NTJ3 1288 aa20.94■□□□□ 0.94
TRIM54-203ENST00000485306 ABT1Q9ULW3 272 aaKnown RBP20.94■□□□□ 0.94
TRIM54-203ENST00000485306 CNTNAP1P78357 1384 aa20.94■□□□□ 0.94
TRIM54-203ENST00000485306 MED23Q9ULK4 1368 aa20.94■□□□□ 0.94
TRIM54-203ENST00000485306 CENPBP07199 599 aaPredicted RBP20.93■□□□□ 0.94
TRIM54-203ENST00000485306 HIRAP54198 1017 aaPredicted RBP20.93■□□□□ 0.94
TRIM54-203ENST00000485306 CCDC57Q2TAC2 916 aa20.93■□□□□ 0.94
TRIM54-203ENST00000485306 DEFB115Q30KQ5 88 aa20.93■□□□□ 0.94
TRIM54-203ENST00000485306 LMBR1LQ6UX01 489 aa20.93■□□□□ 0.94
TRIM54-203ENST00000485306 AGBL3Q8NEM8 1001 aa20.93■□□□□ 0.94
TRIM54-203ENST00000485306 TRPM4Q8TD43 1214 aa20.93■□□□□ 0.94
TRIM54-203ENST00000485306 SHTN1A0MZ66 631 aa20.92■□□□□ 0.94
TRIM54-203ENST00000485306 KCNJ4P48050 445 aa20.92■□□□□ 0.94
TRIM54-203ENST00000485306 CDC37L1Q7L3B6 337 aa20.92■□□□□ 0.94
TRIM54-203ENST00000485306 SAMD7Q7Z3H4 446 aa20.92■□□□□ 0.94
TRIM54-203ENST00000485306 ZNF804BA4D1E1 1349 aa20.92■□□□□ 0.94
TRIM54-203ENST00000485306 USP17L3A6NCW0 530 aa20.91■□□□□ 0.94
TRIM54-203ENST00000485306 USP17L4A6NCW7 530 aa20.91■□□□□ 0.94
TRIM54-203ENST00000485306 TRAF5O00463 557 aa20.91■□□□□ 0.94
TRIM54-203ENST00000485306 SCN9AQ15858 1988 aa20.91■□□□□ 0.94
TRIM54-203ENST00000485306 TBC1D10BQ4KMP7 808 aaPredicted RBP20.91■□□□□ 0.94
TRIM54-203ENST00000485306 TAF7LQ5H9L4 462 aa20.91■□□□□ 0.94
TRIM54-203ENST00000485306 RBM26Q5T8P6 1007 aaKnown RBP20.91■□□□□ 0.94
TRIM54-203ENST00000485306 RSBN1LQ6PCB5 846 aaPredicted RBP20.91■□□□□ 0.94
TRIM54-203ENST00000485306 USP17L1Q7RTZ2 530 aa20.91■□□□□ 0.94
TRIM54-203ENST00000485306 TRPM7Q96QT4 1865 aa20.91■□□□□ 0.94
TRIM54-203ENST00000485306 COA1Q9GZY4 146 aa20.91■□□□□ 0.94
TRIM54-203ENST00000485306 WTIPA6NIX2 430 aaPredicted RBP20.9■□□□□ 0.94
TRIM54-203ENST00000485306 RASSF10A6NK89 507 aa20.9■□□□□ 0.94
TRIM54-203ENST00000485306 CHRNDQ07001 517 aa20.9■□□□□ 0.94
TRIM54-203ENST00000485306 VEGFBP49765 207 aa20.89■□□□□ 0.93
TRIM54-203ENST00000485306 FMR1Q06787 632 aaKnown RBP eCLIP20.89■□□□□ 0.93
TRIM54-203ENST00000485306 DCPSQ96C86 337 aaKnown RBP20.89■□□□□ 0.93
TRIM54-203ENST00000485306 GLIS2Q9BZE0 524 aaPredicted RBP20.89■□□□□ 0.93
TRIM54-203ENST00000485306 EPHA10Q5JZY3 1008 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms