RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 NARFQ9UHQ1 456 aa8.13□□□□□ -1.11
PTCD3-215ENST00000484203 PDZRN3Q9UPQ7 1066 aa8.13□□□□□ -1.11
PTCD3-215ENST00000484203 MAPK8IP3Q9UPT6 1336 aa8.12□□□□□ -1.11
PTCD3-215ENST00000484203 SNRPA1P09661 255 aaKnown RBP8.12□□□□□ -1.11
PTCD3-215ENST00000484203 IL6STP40189 918 aaPredicted RBP8.12□□□□□ -1.11
PTCD3-215ENST00000484203 LMOD3Q0VAK6 560 aa8.12□□□□□ -1.11
PTCD3-215ENST00000484203 TAF7Q15545 349 aaPredicted RBP8.12□□□□□ -1.11
PTCD3-215ENST00000484203 TUSC1Q2TAM9 212 aa8.12□□□□□ -1.11
PTCD3-215ENST00000484203 PRPF38BQ5VTL8 546 aaKnown RBP8.12□□□□□ -1.11
PTCD3-215ENST00000484203 RETREG3Q86VR2 466 aa8.12□□□□□ -1.11
PTCD3-215ENST00000484203 FAM160A2Q8N612 972 aaPredicted RBP8.12□□□□□ -1.11
PTCD3-215ENST00000484203 ZNF496Q96IT1 587 aaPredicted RBP8.12□□□□□ -1.11
PTCD3-215ENST00000484203 PCMTD1Q96MG8 357 aaPredicted RBP8.12□□□□□ -1.11
PTCD3-215ENST00000484203 HEG1Q9ULI3 1381 aa8.11□□□□□ -1.11
PTCD3-215ENST00000484203 GOLGB1Q14789 3259 aaKnown RBP8.11□□□□□ -1.11
PTCD3-215ENST00000484203 SPDYE5A6NIY4 337 aa8.11□□□□□ -1.11
PTCD3-215ENST00000484203 S1PR4O95977 384 aa8.11□□□□□ -1.11
PTCD3-215ENST00000484203 YBX3P16989 372 aaKnown RBP eCLIP8.11□□□□□ -1.11
PTCD3-215ENST00000484203 GGCXP38435 758 aa8.11□□□□□ -1.11
PTCD3-215ENST00000484203 EIF5P55010 431 aaKnown RBP8.11□□□□□ -1.11
PTCD3-215ENST00000484203 QPCTQ16769 361 aa8.11□□□□□ -1.11
PTCD3-215ENST00000484203 PPP1R18Q6NYC8 613 aa8.11□□□□□ -1.11
PTCD3-215ENST00000484203 PIM2Q9P1W9 311 aa8.11□□□□□ -1.11
PTCD3-215ENST00000484203 TOGARAM1Q9Y4F4 1720 aa8.11□□□□□ -1.11
PTCD3-215ENST00000484203 C5P01031 1676 aa8.11□□□□□ -1.11
PTCD3-215ENST00000484203 ZNF831Q5JPB2 1677 aa8.11□□□□□ -1.11
PTCD3-215ENST00000484203 COL15A1P39059 1388 aa8.1□□□□□ -1.11
PTCD3-215ENST00000484203 LILRB3O75022 631 aa8.1□□□□□ -1.11
PTCD3-215ENST00000484203 CANXP27824 592 aaKnown RBP8.1□□□□□ -1.11
PTCD3-215ENST00000484203 TM4SF1P30408 202 aa8.1□□□□□ -1.11
PTCD3-215ENST00000484203 NFE2L2Q16236 605 aa8.1□□□□□ -1.11
PTCD3-215ENST00000484203 MSS51Q4VC12 460 aa8.1□□□□□ -1.11
PTCD3-215ENST00000484203 USPL1Q5W0Q7 1092 aa8.1□□□□□ -1.11
PTCD3-215ENST00000484203 CLEC4GQ6UXB4 293 aa8.1□□□□□ -1.11
PTCD3-215ENST00000484203 SMIM5Q71RC9 77 aa8.1□□□□□ -1.11
PTCD3-215ENST00000484203 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.1□□□□□ -1.11
PTCD3-215ENST00000484203 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.1□□□□□ -1.11
PTCD3-215ENST00000484203 BABAM1Q9NWV8 329 aa8.1□□□□□ -1.11
PTCD3-215ENST00000484203 ZNF652Q9Y2D9 606 aa8.1□□□□□ -1.11
PTCD3-215ENST00000484203 ZBTB1Q9Y2K1 713 aa8.1□□□□□ -1.11
PTCD3-215ENST00000484203 MYBBP1AQ9BQG0 1328 aaKnown RBP8.09□□□□□ -1.11
PTCD3-215ENST00000484203 POLRMTO00411 1230 aaKnown RBP8.09□□□□□ -1.11
PTCD3-215ENST00000484203 DALRD3Q5D0E6 543 aaKnown RBP8.09□□□□□ -1.11
PTCD3-215ENST00000484203 MCM10Q7L590 875 aa8.09□□□□□ -1.11
PTCD3-215ENST00000484203 PRR7Q8TB68 274 aa8.09□□□□□ -1.11
PTCD3-215ENST00000484203 PRDM9Q9NQV7 894 aa8.09□□□□□ -1.11
PTCD3-215ENST00000484203 SRP68Q9UHB9 627 aaKnown RBP8.09□□□□□ -1.11
PTCD3-215ENST00000484203 C10orf71Q711Q0 1435 aa8.09□□□□□ -1.11
PTCD3-215ENST00000484203 A0A0G2JLW4 131 aa8.08□□□□□ -1.12
PTCD3-215ENST00000484203 PPEF1O14829 653 aaPredicted RBP8.08□□□□□ -1.12
PTCD3-215ENST00000484203 NPHP1O15259 732 aa8.08□□□□□ -1.12
PTCD3-215ENST00000484203 GIGYF1O75420 1035 aaPredicted RBP8.08□□□□□ -1.12
PTCD3-215ENST00000484203 SERPINB2P05120 415 aa8.08□□□□□ -1.12
PTCD3-215ENST00000484203 DPEP1P16444 411 aa8.08□□□□□ -1.12
PTCD3-215ENST00000484203 PDE6BP35913 854 aa8.08□□□□□ -1.12
PTCD3-215ENST00000484203 DDX10Q13206 875 aaKnown RBP8.08□□□□□ -1.12
PTCD3-215ENST00000484203 NFIXQ14938 502 aa8.08□□□□□ -1.12
PTCD3-215ENST00000484203 LAPTM4AQ15012 233 aa8.08□□□□□ -1.12
PTCD3-215ENST00000484203 WDR43Q15061 677 aaKnown RBP eCLIP8.08□□□□□ -1.12
PTCD3-215ENST00000484203 RTL5Q5HYW3 569 aaPredicted RBP8.08□□□□□ -1.12
PTCD3-215ENST00000484203 TSC1Q92574 1164 aa8.08□□□□□ -1.12
PTCD3-215ENST00000484203 PLEKHF1Q96S99 279 aa8.08□□□□□ -1.12
PTCD3-215ENST00000484203 SETDB2Q96T68 719 aa8.08□□□□□ -1.12
PTCD3-215ENST00000484203 BCS1LQ9Y276 419 aa8.08□□□□□ -1.12
PTCD3-215ENST00000484203 COL24A1Q17RW2 1714 aa8.07□□□□□ -1.12
PTCD3-215ENST00000484203 RNF223E7ERA6 249 aa8.07□□□□□ -1.12
PTCD3-215ENST00000484203 H0YIN7 160 aa8.07□□□□□ -1.12
PTCD3-215ENST00000484203 DDR1Q08345 913 aa8.07□□□□□ -1.12
PTCD3-215ENST00000484203 BRIP1Q9BX63 1249 aa8.07□□□□□ -1.12
PTCD3-215ENST00000484203 ZNF330Q9Y3S2 320 aaPredicted RBP8.07□□□□□ -1.12
PTCD3-215ENST00000484203 ITGB4P16144 1822 aa8.07□□□□□ -1.12
PTCD3-215ENST00000484203 KCPQ6ZWJ8 1503 aa8.07□□□□□ -1.12
PTCD3-215ENST00000484203 CARMIL3Q8ND23 1372 aa8.07□□□□□ -1.12
PTCD3-215ENST00000484203 PXDNLA1KZ92 1463 aa8.06□□□□□ -1.12
PTCD3-215ENST00000484203 ERBB4Q15303 1308 aa8.06□□□□□ -1.12
PTCD3-215ENST00000484203 CFAP99D6REC4 459 aa8.06□□□□□ -1.12
PTCD3-215ENST00000484203 JUNDP17535 347 aa8.06□□□□□ -1.12
PTCD3-215ENST00000484203 ST5P78524 1137 aa8.06□□□□□ -1.12
PTCD3-215ENST00000484203 TMEM132AQ24JP5 1023 aa8.06□□□□□ -1.12
PTCD3-215ENST00000484203 ARHGAP27Q6ZUM4 889 aa8.06□□□□□ -1.12
PTCD3-215ENST00000484203 DZIP3Q86Y13 1208 aaKnown RBP8.06□□□□□ -1.12
PTCD3-215ENST00000484203 TTLL6Q8N841 843 aa8.06□□□□□ -1.12
PTCD3-215ENST00000484203 CHMP4AQ9BY43 222 aa8.06□□□□□ -1.12
PTCD3-215ENST00000484203 ZC3H4Q9UPT8 1303 aaKnown RBP8.05□□□□□ -1.12
PTCD3-215ENST00000484203 CICQ96RK0 1608 aaPredicted RBP8.05□□□□□ -1.12
PTCD3-215ENST00000484203 ERVV-1B6SEH8 477 aa8.05□□□□□ -1.12
PTCD3-215ENST00000484203 CAMTA2O94983 1202 aa8.05□□□□□ -1.12
PTCD3-215ENST00000484203 A1BGP04217 495 aa8.05□□□□□ -1.12
PTCD3-215ENST00000484203 KCNA3P22001 575 aa8.05□□□□□ -1.12
PTCD3-215ENST00000484203 MMP16P51512 607 aa8.05□□□□□ -1.12
PTCD3-215ENST00000484203 RIPK4P57078 832 aa8.05□□□□□ -1.12
PTCD3-215ENST00000484203 C1QTNF8P60827 252 aa8.05□□□□□ -1.12
PTCD3-215ENST00000484203 CALD1Q05682 793 aaKnown RBP8.05□□□□□ -1.12
PTCD3-215ENST00000484203 SOGA3Q5TF21 947 aa8.05□□□□□ -1.12
PTCD3-215ENST00000484203 TPTE2Q6XPS3 522 aa8.05□□□□□ -1.12
PTCD3-215ENST00000484203 CNBD1Q8NA66 436 aa8.05□□□□□ -1.12
PTCD3-215ENST00000484203 RUNDC1Q96C34 613 aa8.05□□□□□ -1.12
PTCD3-215ENST00000484203 TBC1D2BQ9UPU7 963 aa8.05□□□□□ -1.12
PTCD3-215ENST00000484203 USP16Q9Y5T5 823 aa8.05□□□□□ -1.12
PTCD3-215ENST00000484203 V9GY48 417 aaPredicted RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms