RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 GSDMDP57764 484 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 KRT32Q14532 448 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 TSGA10IPQ3SY00 556 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 FBXO38Q6PIJ6 1188 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 C11orf57Q6ZUT1 292 aaPredicted RBP15.59■□□□□ 0.09
USP40-214ENST00000483519 CCAR2Q8N163 923 aaKnown RBP15.59■□□□□ 0.09
USP40-214ENST00000483519 GTF3C6Q969F1 213 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 CAMTA1Q9Y6Y1 1673 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 CCZ1BP86790 482 aa15.58■□□□□ 0.08
USP40-214ENST00000483519 CCZ1P86791 482 aaPredicted RBP15.58■□□□□ 0.08
USP40-214ENST00000483519 ELF2Q15723 593 aa15.58■□□□□ 0.08
USP40-214ENST00000483519 MED23Q9ULK4 1368 aa15.58■□□□□ 0.08
USP40-214ENST00000483519 PXDNQ92626 1479 aa15.58■□□□□ 0.08
USP40-214ENST00000483519 BRF1Q92994 677 aa15.58■□□□□ 0.08
USP40-214ENST00000483519 FSD1Q9BTV5 496 aa15.58■□□□□ 0.08
USP40-214ENST00000483519 C9orf78Q9NZ63 289 aaPredicted RBP15.58■□□□□ 0.08
USP40-214ENST00000483519 A0A0D9SFI3 127 aa15.57■□□□□ 0.08
USP40-214ENST00000483519 ARID5BQ14865 1188 aa15.57■□□□□ 0.08
USP40-214ENST00000483519 FILIP1Q7Z7B0 1213 aa15.57■□□□□ 0.08
USP40-214ENST00000483519 DDX17Q92841 729 aaKnown RBP15.57■□□□□ 0.08
USP40-214ENST00000483519 ANO10Q9NW15 660 aa15.57■□□□□ 0.08
USP40-214ENST00000483519 JCADQ9P266 1359 aa15.57■□□□□ 0.08
USP40-214ENST00000483519 ADCY9O60503 1353 aa15.57■□□□□ 0.08
USP40-214ENST00000483519 ALDH1L1O75891 902 aa15.57■□□□□ 0.08
USP40-214ENST00000483519 EIF4A1P60842 406 aaKnown RBP15.57■□□□□ 0.08
USP40-214ENST00000483519 CCDC73Q6ZRK6 1079 aa15.57■□□□□ 0.08
USP40-214ENST00000483519 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.57■□□□□ 0.08
USP40-214ENST00000483519 USP16Q9Y5T5 823 aa15.57■□□□□ 0.08
USP40-214ENST00000483519 V9GYY5 206 aaPredicted RBP15.57■□□□□ 0.08
USP40-214ENST00000483519 NAT10Q9H0A0 1025 aaKnown RBP15.56■□□□□ 0.08
USP40-214ENST00000483519 PA2G4Q9UQ80 394 aaKnown RBP15.56■□□□□ 0.08
USP40-214ENST00000483519 NFAT5O94916 1531 aa15.56■□□□□ 0.08
USP40-214ENST00000483519 CEMIPQ8WUJ3 1361 aa15.56■□□□□ 0.08
USP40-214ENST00000483519 JAK2O60674 1132 aa15.56■□□□□ 0.08
USP40-214ENST00000483519 KINO60870 393 aaKnown RBP15.56■□□□□ 0.08
USP40-214ENST00000483519 COL9A3Q14050 684 aaPredicted RBP15.56■□□□□ 0.08
USP40-214ENST00000483519 CEP57L1Q8IYX8 460 aa15.56■□□□□ 0.08
USP40-214ENST00000483519 TRMT1Q9NXH9 659 aaKnown RBP15.56■□□□□ 0.08
USP40-214ENST00000483519 NCAPD2Q15021 1401 aa15.56■□□□□ 0.08
USP40-214ENST00000483519 TRPM3Q9HCF6 1732 aaPredicted RBP15.56■□□□□ 0.08
USP40-214ENST00000483519 COL16A1Q07092 1604 aaPredicted RBP15.55■□□□□ 0.08
USP40-214ENST00000483519 HOXC9P31274 260 aa15.55■□□□□ 0.08
USP40-214ENST00000483519 CCAR1Q8IX12 1150 aaKnown RBP15.55■□□□□ 0.08
USP40-214ENST00000483519 IMPACTQ9P2X3 320 aa15.55■□□□□ 0.08
USP40-214ENST00000483519 SPATA31A3Q5VYP0 1347 aa15.55■□□□□ 0.08
USP40-214ENST00000483519 BMS1Q14692 1282 aaKnown RBP15.55■□□□□ 0.08
USP40-214ENST00000483519 BBXQ8WY36 941 aaPredicted RBP15.55■□□□□ 0.08
USP40-214ENST00000483519 TIGD1Q96MW7 591 aa15.55■□□□□ 0.08
USP40-214ENST00000483519 MED1Q15648 1581 aaPredicted RBP15.54■□□□□ 0.08
USP40-214ENST00000483519 TNS3Q68CZ2 1445 aa15.54■□□□□ 0.08
USP40-214ENST00000483519 G3BP1Q13283 466 aaKnown RBP eCLIP15.54■□□□□ 0.08
USP40-214ENST00000483519 SNW1Q13573 536 aaKnown RBP15.54■□□□□ 0.08
USP40-214ENST00000483519 DHX8Q14562 1220 aaKnown RBP15.54■□□□□ 0.08
USP40-214ENST00000483519 DHX40Q8IX18 779 aaKnown RBP15.54■□□□□ 0.08
USP40-214ENST00000483519 CALCOCO1Q9P1Z2 691 aa15.54■□□□□ 0.08
USP40-214ENST00000483519 KDM3BQ7LBC6 1761 aa15.54■□□□□ 0.08
USP40-214ENST00000483519 RCOR1Q9UKL0 485 aa15.54■□□□□ 0.08
USP40-214ENST00000483519 MYH15Q9Y2K3 1946 aa15.54■□□□□ 0.08
USP40-214ENST00000483519 TUBB4AP04350 444 aa15.53■□□□□ 0.08
USP40-214ENST00000483519 ATL3Q6DD88 541 aa15.53■□□□□ 0.08
USP40-214ENST00000483519 EAF2Q96CJ1 260 aaPredicted RBP15.53■□□□□ 0.08
USP40-214ENST00000483519 NEK1Q96PY6 1258 aa15.53■□□□□ 0.08
USP40-214ENST00000483519 OSBPL5Q9H0X9 879 aaPredicted RBP15.53■□□□□ 0.08
USP40-214ENST00000483519 TAF6LQ9Y6J9 622 aa15.53■□□□□ 0.08
USP40-214ENST00000483519 NRDCO43847 1150 aa15.53■□□□□ 0.08
USP40-214ENST00000483519 NAA16Q6N069 864 aaPredicted RBP15.53■□□□□ 0.08
USP40-214ENST00000483519 CCDC150Q8NCX0 1101 aa15.53■□□□□ 0.08
USP40-214ENST00000483519 LLPHQ9BRT6 129 aaKnown RBP15.53■□□□□ 0.08
USP40-214ENST00000483519 L2HGDHQ9H9P8 463 aa15.53■□□□□ 0.08
USP40-214ENST00000483519 DBF4Q9UBU7 674 aaPredicted RBP15.53■□□□□ 0.08
USP40-214ENST00000483519 ERBB3P21860 1342 aa15.53■□□□□ 0.08
USP40-214ENST00000483519 CEBPZQ03701 1054 aaKnown RBP15.52■□□□□ 0.08
USP40-214ENST00000483519 FAM160A1Q05DH4 1040 aa15.52■□□□□ 0.08
USP40-214ENST00000483519 USPL1Q5W0Q7 1092 aa15.52■□□□□ 0.08
USP40-214ENST00000483519 DDX11Q96FC9 970 aa15.52■□□□□ 0.08
USP40-214ENST00000483519 CCDC8Q9H0W5 538 aaPredicted RBP15.52■□□□□ 0.08
USP40-214ENST00000483519 BOLA2Q9H3K6 86 aa15.52■□□□□ 0.08
USP40-214ENST00000483519 H2AFXP16104 143 aaPredicted RBP15.52■□□□□ 0.08
USP40-214ENST00000483519 NUTM2GQ5VZR2 741 aa15.52■□□□□ 0.08
USP40-214ENST00000483519 LMOD2Q6P5Q4 547 aa15.52■□□□□ 0.08
USP40-214ENST00000483519 ZNF396Q96N95 335 aaPredicted RBP15.52■□□□□ 0.08
USP40-214ENST00000483519 TMEM51Q9NW97 253 aa15.52■□□□□ 0.08
USP40-214ENST00000483519 MAP3K2Q9Y2U5 619 aa15.52■□□□□ 0.08
USP40-214ENST00000483519 TAF5LO75529 589 aa15.52■□□□□ 0.07
USP40-214ENST00000483519 SASH1O94885 1247 aa15.52■□□□□ 0.07
USP40-214ENST00000483519 NLRP6P59044 892 aa15.52■□□□□ 0.07
USP40-214ENST00000483519 ZNF589Q86UQ0 364 aaPredicted RBP15.52■□□□□ 0.07
USP40-214ENST00000483519 AOPEPQ8N6M6 819 aa15.52■□□□□ 0.07
USP40-214ENST00000483519 NOL10Q9BSC4 688 aaKnown RBP15.52■□□□□ 0.07
USP40-214ENST00000483519 GOLPH3LQ9H4A5 285 aa15.52■□□□□ 0.07
USP40-214ENST00000483519 OVOS2A0A0G2JMS6 1433 aa15.51■□□□□ 0.07
USP40-214ENST00000483519 PSDA5PKW4 1024 aaPredicted RBP15.51■□□□□ 0.07
USP40-214ENST00000483519 GTF2E1P29083 439 aaPredicted RBP15.51■□□□□ 0.07
USP40-214ENST00000483519 KCNJ6P48051 423 aa15.51■□□□□ 0.07
USP40-214ENST00000483519 Q6ZUG5 572 aa15.51■□□□□ 0.07
USP40-214ENST00000483519 ILDR1Q86SU0 546 aaPredicted RBP15.51■□□□□ 0.07
USP40-214ENST00000483519 ANXA1P04083 346 aa15.51■□□□□ 0.07
USP40-214ENST00000483519 ADD1P35611 737 aaKnown RBP15.51■□□□□ 0.07
USP40-214ENST00000483519 ABTB2Q8N961 1025 aa15.51■□□□□ 0.07
USP40-214ENST00000483519 SMARCC2Q8TAQ2 1214 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms