RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 C10orf71Q711Q0 1435 aa10.17□□□□□ -0.78
USP4-210ENST00000483212 HOXA10P31260 410 aaPredicted RBP10.17□□□□□ -0.78
USP4-210ENST00000483212 TNNI3KQ59H18 835 aa10.17□□□□□ -0.78
USP4-210ENST00000483212 SAMD1Q6SPF0 538 aaPredicted RBP10.17□□□□□ -0.78
USP4-210ENST00000483212 LDHAL6AQ6ZMR3 332 aa10.17□□□□□ -0.78
USP4-210ENST00000483212 CELF1Q92879 486 aaKnown RBP10.17□□□□□ -0.78
USP4-210ENST00000483212 GPR108Q9NPR9 543 aa10.17□□□□□ -0.78
USP4-210ENST00000483212 STAP2Q9UGK3 403 aa10.17□□□□□ -0.78
USP4-210ENST00000483212 PARP3Q9Y6F1 533 aa10.17□□□□□ -0.78
USP4-210ENST00000483212 FPGT-TNNI3KV9GXZ4 949 aa10.17□□□□□ -0.78
USP4-210ENST00000483212 SPEF2Q9C093 1822 aa10.17□□□□□ -0.78
USP4-210ENST00000483212 R3HDM1Q15032 1099 aaKnown RBP10.16□□□□□ -0.78
USP4-210ENST00000483212 TAF7LQ5H9L4 462 aa10.16□□□□□ -0.78
USP4-210ENST00000483212 CLASRPQ8N2M8 674 aaKnown RBP10.16□□□□□ -0.78
USP4-210ENST00000483212 CDC5LQ99459 802 aaKnown RBP10.16□□□□□ -0.78
USP4-210ENST00000483212 TLR7Q9NYK1 1049 aaKnown RBP10.16□□□□□ -0.78
USP4-210ENST00000483212 TAF1P21675 1872 aa10.16□□□□□ -0.78
USP4-210ENST00000483212 AOX1Q06278 1338 aa10.15□□□□□ -0.78
USP4-210ENST00000483212 MROH5Q6ZUA9 1318 aa10.15□□□□□ -0.78
USP4-210ENST00000483212 SRGNP10124 158 aa10.15□□□□□ -0.78
USP4-210ENST00000483212 GSPT1P15170 499 aaKnown RBP10.15□□□□□ -0.78
USP4-210ENST00000483212 MX1P20591 662 aa10.15□□□□□ -0.78
USP4-210ENST00000483212 FGFR2P21802 821 aa10.15□□□□□ -0.78
USP4-210ENST00000483212 IGHMBP2P38935 993 aaKnown RBP10.15□□□□□ -0.78
USP4-210ENST00000483212 PDE1AP54750 535 aa10.15□□□□□ -0.78
USP4-210ENST00000483212 GRAPQ13588 217 aa10.15□□□□□ -0.78
USP4-210ENST00000483212 AACSQ86V21 672 aa10.15□□□□□ -0.78
USP4-210ENST00000483212 ANKRD18AQ8IVF6 992 aa10.15□□□□□ -0.78
USP4-210ENST00000483212 GRAPLQ8TC17 118 aaPredicted RBP10.15□□□□□ -0.78
USP4-210ENST00000483212 PI4K2BQ8TCG2 481 aa10.15□□□□□ -0.78
USP4-210ENST00000483212 SGIP1Q9BQI5 828 aa10.15□□□□□ -0.78
USP4-210ENST00000483212 BSDC1Q9NW68 430 aaPredicted RBP10.15□□□□□ -0.78
USP4-210ENST00000483212 DBNLQ9UJU6 430 aaKnown RBP10.15□□□□□ -0.78
USP4-210ENST00000483212 LRRC37AA6NMS7 1700 aa10.15□□□□□ -0.78
USP4-210ENST00000483212 ARAP2Q8WZ64 1704 aa10.15□□□□□ -0.78
USP4-210ENST00000483212 KIF13BQ9NQT8 1826 aa10.14□□□□□ -0.79
USP4-210ENST00000483212 KIAA1551Q9HCM1 1747 aa10.14□□□□□ -0.79
USP4-210ENST00000483212 NPHP1O15259 732 aa10.14□□□□□ -0.79
USP4-210ENST00000483212 PDE8BO95263 885 aa10.14□□□□□ -0.79
USP4-210ENST00000483212 RPS8P62241 208 aaKnown RBP10.14□□□□□ -0.79
USP4-210ENST00000483212 BMP2KLQ5H9B9 411 aa10.14□□□□□ -0.79
USP4-210ENST00000483212 TTC22Q5TAA0 569 aa10.14□□□□□ -0.79
USP4-210ENST00000483212 TSHZ3Q63HK5 1081 aa10.14□□□□□ -0.79
USP4-210ENST00000483212 DDX46Q7L014 1031 aaKnown RBP10.14□□□□□ -0.79
USP4-210ENST00000483212 SLC51AQ86UW1 340 aa10.14□□□□□ -0.79
USP4-210ENST00000483212 CRAMP1Q96RY5 1269 aa10.14□□□□□ -0.79
USP4-210ENST00000483212 MTFR1LQ9H019 292 aa10.14□□□□□ -0.79
USP4-210ENST00000483212 CCDC8Q9H0W5 538 aaPredicted RBP10.14□□□□□ -0.79
USP4-210ENST00000483212 CNNM1Q9NRU3 951 aa10.14□□□□□ -0.79
USP4-210ENST00000483212 CEP126Q9P2H0 1117 aa10.14□□□□□ -0.79
USP4-210ENST00000483212 ZBTB47Q9UFB7 747 aaPredicted RBP10.14□□□□□ -0.79
USP4-210ENST00000483212 LTBP1Q14766 1721 aa10.13□□□□□ -0.79
USP4-210ENST00000483212 TTC41PQ6P2S7 1318 aa10.13□□□□□ -0.79
USP4-210ENST00000483212 A0A1B0GUL7 405 aa10.13□□□□□ -0.79
USP4-210ENST00000483212 PSDA5PKW4 1024 aaPredicted RBP10.13□□□□□ -0.79
USP4-210ENST00000483212 GABBR2O75899 941 aa10.13□□□□□ -0.79
USP4-210ENST00000483212 ZBTB7AO95365 584 aa10.13□□□□□ -0.79
USP4-210ENST00000483212 PDE6BP35913 854 aa10.13□□□□□ -0.79
USP4-210ENST00000483212 CHRNDQ07001 517 aa10.13□□□□□ -0.79
USP4-210ENST00000483212 METTL24Q5JXM2 366 aa10.13□□□□□ -0.79
USP4-210ENST00000483212 MPHOSPH8Q99549 860 aa10.13□□□□□ -0.79
USP4-210ENST00000483212 DBNDD2Q9BQY9 259 aa10.13□□□□□ -0.79
USP4-210ENST00000483212 MINPP1Q9UNW1 487 aa10.13□□□□□ -0.79
USP4-210ENST00000483212 DLEC1Q9Y238 1755 aa10.13□□□□□ -0.79
USP4-210ENST00000483212 IRS2Q9Y4H2 1338 aa10.12□□□□□ -0.79
USP4-210ENST00000483212 IFIT2P09913 472 aaKnown RBP10.12□□□□□ -0.79
USP4-210ENST00000483212 NPR1P16066 1061 aa10.12□□□□□ -0.79
USP4-210ENST00000483212 TIMM10P62072 90 aa10.12□□□□□ -0.79
USP4-210ENST00000483212 ATP2B3Q16720 1220 aa10.12□□□□□ -0.79
USP4-210ENST00000483212 RPGRQ92834 1020 aaKnown RBP10.12□□□□□ -0.79
USP4-210ENST00000483212 RBM17Q96I25 401 aaKnown RBP10.12□□□□□ -0.79
USP4-210ENST00000483212 ECHDC1Q9NTX5 307 aa10.12□□□□□ -0.79
USP4-210ENST00000483212 SNED1Q8TER0 1413 aa10.11□□□□□ -0.79
USP4-210ENST00000483212 SNAP23O00161 211 aa10.11□□□□□ -0.79
USP4-210ENST00000483212 ADORA1P30542 326 aa10.11□□□□□ -0.79
USP4-210ENST00000483212 PTGER2P43116 358 aa10.11□□□□□ -0.79
USP4-210ENST00000483212 PUM3Q15397 648 aaKnown RBP10.11□□□□□ -0.79
USP4-210ENST00000483212 C8orf34Q49A92 452 aa10.11□□□□□ -0.79
USP4-210ENST00000483212 STYK1Q6J9G0 422 aa10.11□□□□□ -0.79
USP4-210ENST00000483212 C2CD5Q86YS7 1000 aa10.11□□□□□ -0.79
USP4-210ENST00000483212 HELBQ8NG08 1087 aaPredicted RBP10.11□□□□□ -0.79
USP4-210ENST00000483212 MASTLQ96GX5 879 aa10.11□□□□□ -0.79
USP4-210ENST00000483212 BCL11AQ9H165 835 aa10.11□□□□□ -0.79
USP4-210ENST00000483212 ATF5Q9Y2D1 282 aaPredicted RBP10.11□□□□□ -0.79
USP4-210ENST00000483212 AKAP2Q9Y2D5 859 aa10.11□□□□□ -0.79
USP4-210ENST00000483212 DUOX1Q9NRD9 1551 aa10.1□□□□□ -0.79
USP4-210ENST00000483212 WTIPA6NIX2 430 aaPredicted RBP10.1□□□□□ -0.79
USP4-210ENST00000483212 TAF5LO75529 589 aa10.1□□□□□ -0.79
USP4-210ENST00000483212 BBOX1O75936 387 aa10.1□□□□□ -0.79
USP4-210ENST00000483212 GLRX3O76003 335 aaKnown RBP10.1□□□□□ -0.79
USP4-210ENST00000483212 ATP5JP18859 108 aa10.1□□□□□ -0.79
USP4-210ENST00000483212 CHRNA5P30532 468 aa10.1□□□□□ -0.79
USP4-210ENST00000483212 POTEGQ6S5H5 508 aa10.1□□□□□ -0.79
USP4-210ENST00000483212 LPIN2Q92539 896 aa10.1□□□□□ -0.79
USP4-210ENST00000483212 XAGE2Q96GT9 111 aa10.1□□□□□ -0.79
USP4-210ENST00000483212 PPEF1O14829 653 aaPredicted RBP10.09□□□□□ -0.79
USP4-210ENST00000483212 MYCNP04198 464 aaPredicted RBP10.09□□□□□ -0.79
USP4-210ENST00000483212 SDSP20132 328 aa10.09□□□□□ -0.79
USP4-210ENST00000483212 KCNA3P22001 575 aa10.09□□□□□ -0.79
USP4-210ENST00000483212 UBE4AQ14139 1066 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms