RNA–Protein interactions for RNA: ENST00000479003.5

CHKB-208, Transcript of choline kinase beta, human

TSL 2

Gene CHKB, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHKB-208	ENST00000479003	CCDC171	Q6TFL3	1326 aa		32.96	■■■□□ 2.87
CHKB-208	ENST00000479003	SNRK	Q9NRH2	765 aa		32.95	■■■□□ 2.87
CHKB-208	ENST00000479003	NECTIN1	Q15223	517 aa		32.95	■■■□□ 2.86
CHKB-208	ENST00000479003	RGS17	Q9UGC6	210 aa	Predicted RBP	32.95	■■■□□ 2.86
CHKB-208	ENST00000479003	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	32.95	■■■□□ 2.86
CHKB-208	ENST00000479003	BCOR	Q6W2J9	1755 aa		32.94	■■■□□ 2.86
CHKB-208	ENST00000479003	PTPN12	Q05209	780 aa	Known RBP	32.94	■■■□□ 2.86
CHKB-208	ENST00000479003	RC3H1	Q5TC82	1133 aa	Known RBP	32.94	■■■□□ 2.86
CHKB-208	ENST00000479003	CHMP3	Q9Y3E7	222 aa		32.94	■■■□□ 2.86
CHKB-208	ENST00000479003	RXRB	P28702	533 aa		32.93	■■■□□ 2.86
CHKB-208	ENST00000479003	VPS53	Q5VIR6	699 aa		32.93	■■■□□ 2.86
CHKB-208	ENST00000479003	PRPF40B	Q6NWY9	871 aa	Known RBP	32.93	■■■□□ 2.86
CHKB-208	ENST00000479003	ZSWIM6	Q9HCJ5	1215 aa		32.93	■■■□□ 2.86
CHKB-208	ENST00000479003	LRRC4B	Q9NT99	713 aa		32.93	■■■□□ 2.86
CHKB-208	ENST00000479003	COPRS	Q9NQ92	184 aa		32.92	■■■□□ 2.86
CHKB-208	ENST00000479003	TLR7	Q9NYK1	1049 aa	Known RBP	32.92	■■■□□ 2.86
CHKB-208	ENST00000479003	TCHH	Q07283	1943 aa		32.92	■■■□□ 2.86
CHKB-208	ENST00000479003	GNPAT	O15228	680 aa		32.92	■■■□□ 2.86
CHKB-208	ENST00000479003	JAKMIP1	Q96N16	626 aa	Known RBP	32.92	■■■□□ 2.86
CHKB-208	ENST00000479003	NMI	Q13287	307 aa	Predicted RBP	32.91	■■■□□ 2.86
CHKB-208	ENST00000479003	ADCK5	Q3MIX3	580 aa		32.91	■■■□□ 2.86
CHKB-208	ENST00000479003	AMIGO3	Q86WK7	504 aa		32.91	■■■□□ 2.86
CHKB-208	ENST00000479003	TRMT112	Q9UI30	125 aa	Known RBP	32.91	■■■□□ 2.86
CHKB-208	ENST00000479003	SYCE3	A1L190	88 aa		32.9	■■■□□ 2.86
CHKB-208	ENST00000479003	CPA1	P15085	419 aa		32.9	■■■□□ 2.86
CHKB-208	ENST00000479003	C4B	P0C0L5	1744 aa		32.9	■■■□□ 2.86
CHKB-208	ENST00000479003	RPS6KA4	O75676	772 aa		32.9	■■■□□ 2.86
CHKB-208	ENST00000479003	MAP4K1	Q92918	833 aa		32.9	■■■□□ 2.86
CHKB-208	ENST00000479003	PDRG1	Q9NUG6	133 aa		32.9	■■■□□ 2.86
CHKB-208	ENST00000479003	CYP46A1	Q9Y6A2	500 aa		32.9	■■■□□ 2.86
CHKB-208	ENST00000479003	CDHR2	Q9BYE9	1310 aa		32.89	■■■□□ 2.86
CHKB-208	ENST00000479003	TMEM87A	Q8NBN3	555 aa		32.89	■■■□□ 2.86
CHKB-208	ENST00000479003	ZSCAN31	Q96LW9	406 aa	Predicted RBP	32.89	■■■□□ 2.86
CHKB-208	ENST00000479003	FAM227B	Q96M60	508 aa		32.89	■■■□□ 2.86
CHKB-208	ENST00000479003	PLA2G12B	Q9BX93	195 aa		32.89	■■■□□ 2.86
CHKB-208	ENST00000479003	RBM8A	Q9Y5S9	174 aa	Known RBP	32.89	■■■□□ 2.86
CHKB-208	ENST00000479003	ZSCAN22	P10073	491 aa	Predicted RBP	32.88	■■■□□ 2.85
CHKB-208	ENST00000479003	SMC3	Q9UQE7	1217 aa		32.88	■■■□□ 2.85
CHKB-208	ENST00000479003	ZKSCAN1	P17029	563 aa	Predicted RBP	32.87	■■■□□ 2.85
CHKB-208	ENST00000479003	SUSD4	Q5VX71	490 aa		32.87	■■■□□ 2.85
CHKB-208	ENST00000479003	LARP6	Q9BRS8	491 aa	Known RBP	32.87	■■■□□ 2.85
CHKB-208	ENST00000479003	BOLA2	Q9H3K6	86 aa		32.87	■■■□□ 2.85
CHKB-208	ENST00000479003	CREB3L3	Q68CJ9	461 aa		32.87	■■■□□ 2.85
CHKB-208	ENST00000479003	SH2B1	Q9NRF2	756 aa	Predicted RBP	32.87	■■■□□ 2.85
CHKB-208	ENST00000479003	SCN7A	Q01118	1682 aa		32.87	■■■□□ 2.85
CHKB-208	ENST00000479003	STX6	O43752	255 aa		32.86	■■■□□ 2.85
CHKB-208	ENST00000479003	LARGE1	O95461	756 aa		32.86	■■■□□ 2.85
CHKB-208	ENST00000479003	USP48	Q86UV5	1035 aa		32.86	■■■□□ 2.85
CHKB-208	ENST00000479003	SYAP1	Q96A49	352 aa	Predicted RBP	32.86	■■■□□ 2.85
CHKB-208	ENST00000479003	NIP7	Q9Y221	180 aa	Known RBP eCLIP	32.86	■■■□□ 2.85
CHKB-208	ENST00000479003	SYT1	P21579	422 aa		32.86	■■■□□ 2.85
CHKB-208	ENST00000479003	POTEA	Q6S8J7	498 aa		32.86	■■■□□ 2.85
CHKB-208	ENST00000479003	FAM177B	A6PVY3	158 aa		32.85	■■■□□ 2.85
CHKB-208	ENST00000479003	CCDC85A	Q96PX6	553 aa	Predicted RBP	32.85	■■■□□ 2.85
CHKB-208	ENST00000479003	FSD1	Q9BTV5	496 aa		32.85	■■■□□ 2.85
CHKB-208	ENST00000479003	ZNF652	Q9Y2D9	606 aa		32.85	■■■□□ 2.85
CHKB-208	ENST00000479003	RTCB	Q9Y3I0	505 aa	Known RBP	32.85	■■■□□ 2.85
CHKB-208	ENST00000479003	MED23	Q9ULK4	1368 aa		32.85	■■■□□ 2.85
CHKB-208	ENST00000479003	IRS4	O14654	1257 aa	Predicted RBP	32.84	■■■□□ 2.85
CHKB-208	ENST00000479003	PDLIM2	Q96JY6	352 aa		32.84	■■■□□ 2.85
CHKB-208	ENST00000479003		A0A0D9SFI3	127 aa		32.83	■■■□□ 2.85
CHKB-208	ENST00000479003	GADD45B	O75293	160 aa	Predicted RBP	32.83	■■■□□ 2.85
CHKB-208	ENST00000479003	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	32.83	■■■□□ 2.85
CHKB-208	ENST00000479003	CLEC4G	Q6UXB4	293 aa		32.83	■■■□□ 2.85
CHKB-208	ENST00000479003	FOXD4L3	Q6VB84	417 aa	Predicted RBP	32.83	■■■□□ 2.85
CHKB-208	ENST00000479003	GDPD2	Q9HCC8	539 aa		32.83	■■■□□ 2.85
CHKB-208	ENST00000479003	ZNF594	Q96JF6	807 aa	Predicted RBP	32.83	■■■□□ 2.85
CHKB-208	ENST00000479003	SRP68	Q9UHB9	627 aa	Known RBP	32.83	■■■□□ 2.85
CHKB-208	ENST00000479003	CSF1R	P07333	972 aa		32.82	■■■□□ 2.84
CHKB-208	ENST00000479003	KCNJ4	P48050	445 aa		32.82	■■■□□ 2.84
CHKB-208	ENST00000479003	PARP10	Q53GL7	1025 aa		32.82	■■■□□ 2.84
CHKB-208	ENST00000479003	BCL2L12	Q9HB09	334 aa		32.82	■■■□□ 2.84
CHKB-208	ENST00000479003	MYH3	P11055	1940 aa		32.82	■■■□□ 2.84
CHKB-208	ENST00000479003	SLC27A2	O14975	620 aa		32.81	■■■□□ 2.84
CHKB-208	ENST00000479003	CCDC83	Q8IWF9	413 aa		32.81	■■■□□ 2.84
CHKB-208	ENST00000479003	F13A1	P00488	732 aa		32.81	■■■□□ 2.84
CHKB-208	ENST00000479003	USPL1	Q5W0Q7	1092 aa		32.81	■■■□□ 2.84
CHKB-208	ENST00000479003	UTP14A	Q9BVJ6	771 aa	Known RBP	32.81	■■■□□ 2.84
CHKB-208	ENST00000479003	NARF	Q9UHQ1	456 aa		32.81	■■■□□ 2.84
CHKB-208	ENST00000479003	PSMA5	P28066	241 aa		32.8	■■■□□ 2.84
CHKB-208	ENST00000479003	AK7	Q96M32	723 aa		32.8	■■■□□ 2.84
CHKB-208	ENST00000479003	ATP5J	P18859	108 aa		32.8	■■■□□ 2.84
CHKB-208	ENST00000479003	CTSW	P56202	376 aa		32.8	■■■□□ 2.84
CHKB-208	ENST00000479003	HS1BP3	Q53T59	392 aa		32.8	■■■□□ 2.84
CHKB-208	ENST00000479003	ARHGEF1	Q92888	912 aa	Known RBP	32.8	■■■□□ 2.84
CHKB-208	ENST00000479003	SH3TC1	Q8TE82	1336 aa		32.79	■■■□□ 2.84
CHKB-208	ENST00000479003	C4A	P0C0L4	1744 aa		32.79	■■■□□ 2.84
CHKB-208	ENST00000479003	PHF14	O94880	888 aa		32.79	■■■□□ 2.84
CHKB-208	ENST00000479003	NTSR2	O95665	410 aa		32.79	■■■□□ 2.84
CHKB-208	ENST00000479003	GJB2	P29033	226 aa		32.79	■■■□□ 2.84
CHKB-208	ENST00000479003	TNNI3K	Q59H18	835 aa		32.79	■■■□□ 2.84
CHKB-208	ENST00000479003	TTLL11	Q8NHH1	800 aa		32.79	■■■□□ 2.84
CHKB-208	ENST00000479003	ATP6V1D	Q9Y5K8	247 aa		32.79	■■■□□ 2.84
CHKB-208	ENST00000479003	FPGT-TNNI3K	V9GXZ4	949 aa		32.79	■■■□□ 2.84
CHKB-208	ENST00000479003	TFCP2	Q12800	502 aa		32.78	■■■□□ 2.84
CHKB-208	ENST00000479003	CCDC57	Q2TAC2	916 aa		32.78	■■■□□ 2.84
CHKB-208	ENST00000479003	SLC27A3	Q5K4L6	730 aa		32.78	■■■□□ 2.84
CHKB-208	ENST00000479003	ST3GAL1	Q11201	340 aa		32.78	■■■□□ 2.84
CHKB-208	ENST00000479003	RNF20	Q5VTR2	975 aa		32.78	■■■□□ 2.84
CHKB-208	ENST00000479003	ATG9A	Q7Z3C6	839 aa		32.78	■■■□□ 2.84

Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms