RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 HOXD8P13378 290 aaPredicted RBP7.9□□□□□ -1.14
UPF3B-203ENST00000478840 CANXP27824 592 aaKnown RBP7.9□□□□□ -1.14
UPF3B-203ENST00000478840 RBL2Q08999 1139 aa7.9□□□□□ -1.14
UPF3B-203ENST00000478840 ZFP42Q96MM3 310 aa7.9□□□□□ -1.14
UPF3B-203ENST00000478840 PPM1HQ9ULR3 514 aa7.9□□□□□ -1.14
UPF3B-203ENST00000478840 PCDHGC4Q9Y5F7 938 aa7.9□□□□□ -1.14
UPF3B-203ENST00000478840 ATXN7O15265 892 aaPredicted RBP7.89□□□□□ -1.15
UPF3B-203ENST00000478840 MMP20O60882 483 aa7.89□□□□□ -1.15
UPF3B-203ENST00000478840 SASH3O75995 380 aa7.89□□□□□ -1.15
UPF3B-203ENST00000478840 KIF4AO95239 1232 aa7.89□□□□□ -1.15
UPF3B-203ENST00000478840 THBS1P07996 1170 aa7.89□□□□□ -1.15
UPF3B-203ENST00000478840 DNAJA1P31689 397 aaKnown RBP7.89□□□□□ -1.15
UPF3B-203ENST00000478840 SOX18P35713 384 aa7.89□□□□□ -1.15
UPF3B-203ENST00000478840 DPH6Q7L8W6 267 aa7.89□□□□□ -1.15
UPF3B-203ENST00000478840 VPS37DQ86XT2 251 aa7.89□□□□□ -1.15
UPF3B-203ENST00000478840 SPATA32Q96LK8 384 aa7.89□□□□□ -1.15
UPF3B-203ENST00000478840 EHD4Q9H223 541 aa7.89□□□□□ -1.15
UPF3B-203ENST00000478840 GMPR2Q9P2T1 348 aaKnown RBP7.89□□□□□ -1.15
UPF3B-203ENST00000478840 CADPSQ9ULU8 1353 aa7.88□□□□□ -1.15
UPF3B-203ENST00000478840 MAP3K6O95382 1288 aa7.88□□□□□ -1.15
UPF3B-203ENST00000478840 MAP3K10Q02779 954 aa7.88□□□□□ -1.15
UPF3B-203ENST00000478840 TNP2Q05952 138 aa7.88□□□□□ -1.15
UPF3B-203ENST00000478840 SFSWAPQ12872 951 aaKnown RBP7.88□□□□□ -1.15
UPF3B-203ENST00000478840 RASGRP4Q8TDF6 673 aa7.88□□□□□ -1.15
UPF3B-203ENST00000478840 GAS2L1Q99501 681 aaPredicted RBP7.88□□□□□ -1.15
UPF3B-203ENST00000478840 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.88□□□□□ -1.15
UPF3B-203ENST00000478840 PHF20L1A8MW92 1017 aa7.87□□□□□ -1.15
UPF3B-203ENST00000478840 FGRP09769 529 aa7.87□□□□□ -1.15
UPF3B-203ENST00000478840 ATF4P18848 351 aaPredicted RBP7.87□□□□□ -1.15
UPF3B-203ENST00000478840 TARSP26639 723 aaKnown RBP7.87□□□□□ -1.15
UPF3B-203ENST00000478840 PWP1Q13610 501 aa7.87□□□□□ -1.15
UPF3B-203ENST00000478840 MCF2L2Q86YR7 1114 aa7.87□□□□□ -1.15
UPF3B-203ENST00000478840 DHX38Q92620 1227 aaKnown RBP7.87□□□□□ -1.15
UPF3B-203ENST00000478840 PUS7Q96PZ0 661 aaKnown RBP7.87□□□□□ -1.15
UPF3B-203ENST00000478840 TCF12Q99081 682 aa7.87□□□□□ -1.15
UPF3B-203ENST00000478840 ABCB6Q9NP58 842 aa7.87□□□□□ -1.15
UPF3B-203ENST00000478840 COPRSQ9NQ92 184 aa7.87□□□□□ -1.15
UPF3B-203ENST00000478840 LATS2Q9NRM7 1088 aa7.87□□□□□ -1.15
UPF3B-203ENST00000478840 NDFIP2Q9NV92 336 aa7.87□□□□□ -1.15
UPF3B-203ENST00000478840 ZFATQ9P243 1243 aa7.87□□□□□ -1.15
UPF3B-203ENST00000478840 KANSL3Q9P2N6 904 aa7.87□□□□□ -1.15
UPF3B-203ENST00000478840 TTF2Q9UNY4 1162 aaKnown RBP7.87□□□□□ -1.15
UPF3B-203ENST00000478840 TMEM238LA0A1B0GVL6 79 aa7.86□□□□□ -1.15
UPF3B-203ENST00000478840 RARAP10276 462 aa7.86□□□□□ -1.15
UPF3B-203ENST00000478840 GTF2F1P35269 517 aaKnown RBP eCLIP7.86□□□□□ -1.15
UPF3B-203ENST00000478840 PAK2Q13177 524 aa7.86□□□□□ -1.15
UPF3B-203ENST00000478840 SOGA3Q5TF21 947 aa7.86□□□□□ -1.15
UPF3B-203ENST00000478840 GPRASP2Q96D09 838 aa7.86□□□□□ -1.15
UPF3B-203ENST00000478840 DNAJC2Q99543 621 aaKnown RBP7.86□□□□□ -1.15
UPF3B-203ENST00000478840 LNPKQ9C0E8 428 aa7.86□□□□□ -1.15
UPF3B-203ENST00000478840 ZFYVE1Q9HBF4 777 aa7.86□□□□□ -1.15
UPF3B-203ENST00000478840 KBTBD4Q9NVX7 518 aa7.86□□□□□ -1.15
UPF3B-203ENST00000478840 TLR7Q9NYK1 1049 aaKnown RBP7.86□□□□□ -1.15
UPF3B-203ENST00000478840 SLC35F4A4IF30 521 aa7.85□□□□□ -1.15
UPF3B-203ENST00000478840 MAPTP10636 758 aaKnown RBP7.85□□□□□ -1.15
UPF3B-203ENST00000478840 RLBP1P12271 317 aa7.85□□□□□ -1.15
UPF3B-203ENST00000478840 SV2BQ7L1I2 683 aa7.85□□□□□ -1.15
UPF3B-203ENST00000478840 NOP9Q86U38 636 aaKnown RBP7.85□□□□□ -1.15
UPF3B-203ENST00000478840 CCNJLQ8IV13 435 aa7.85□□□□□ -1.15
UPF3B-203ENST00000478840 CNTNAP3BQ96NU0 1288 aa7.85□□□□□ -1.15
UPF3B-203ENST00000478840 HIRIP3Q9BW71 556 aaPredicted RBP7.85□□□□□ -1.15
UPF3B-203ENST00000478840 CNTNAP3Q9BZ76 1288 aa7.85□□□□□ -1.15
UPF3B-203ENST00000478840 LIN7BQ9HAP6 207 aa7.85□□□□□ -1.15
UPF3B-203ENST00000478840 ATP13A2Q9NQ11 1180 aa7.85□□□□□ -1.15
UPF3B-203ENST00000478840 KCNQ5Q9NR82 932 aa7.85□□□□□ -1.15
UPF3B-203ENST00000478840 HCN2Q9UL51 889 aa7.85□□□□□ -1.15
UPF3B-203ENST00000478840 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.85□□□□□ -1.15
UPF3B-203ENST00000478840 H7C1W4 665 aa7.84□□□□□ -1.15
UPF3B-203ENST00000478840 SMARCA5O60264 1052 aaPredicted RBP7.84□□□□□ -1.15
UPF3B-203ENST00000478840 PSAPP07602 524 aa7.84□□□□□ -1.15
UPF3B-203ENST00000478840 FCGRTP55899 365 aa7.84□□□□□ -1.15
UPF3B-203ENST00000478840 CCDC85BQ15834 202 aaPredicted RBP7.84□□□□□ -1.15
UPF3B-203ENST00000478840 KRT25Q7Z3Z0 450 aa7.84□□□□□ -1.15
UPF3B-203ENST00000478840 CEP120Q8N960 986 aa7.84□□□□□ -1.15
UPF3B-203ENST00000478840 GMCL1Q96IK5 515 aa7.84□□□□□ -1.15
UPF3B-203ENST00000478840 OXCT2Q9BYC2 517 aaPredicted RBP7.84□□□□□ -1.15
UPF3B-203ENST00000478840 NUCKS1Q9H1E3 243 aaKnown RBP7.84□□□□□ -1.15
UPF3B-203ENST00000478840 STRN4Q9NRL3 753 aa7.84□□□□□ -1.15
UPF3B-203ENST00000478840 DCDC2BA2VCK2 349 aa7.83□□□□□ -1.16
UPF3B-203ENST00000478840 KHNYNO15037 678 aaKnown RBP7.83□□□□□ -1.16
UPF3B-203ENST00000478840 BNIP3LO60238 219 aa7.83□□□□□ -1.16
UPF3B-203ENST00000478840 SPEM2Q0P670 501 aa7.83□□□□□ -1.16
UPF3B-203ENST00000478840 HYAL2Q12891 473 aa7.83□□□□□ -1.16
UPF3B-203ENST00000478840 RELL1Q8IUW5 271 aa7.83□□□□□ -1.16
UPF3B-203ENST00000478840 SEC16BQ96JE7 1060 aa7.83□□□□□ -1.16
UPF3B-203ENST00000478840 TMEM74Q96NL1 305 aa7.83□□□□□ -1.16
UPF3B-203ENST00000478840 ZKSCAN3Q9BRR0 538 aa7.83□□□□□ -1.16
UPF3B-203ENST00000478840 MARK1Q9P0L2 795 aa7.83□□□□□ -1.16
UPF3B-203ENST00000478840 ADAMTS1Q9UHI8 967 aa7.83□□□□□ -1.16
UPF3B-203ENST00000478840 MAN1A2O60476 641 aa7.82□□□□□ -1.16
UPF3B-203ENST00000478840 HMGB1P09429 215 aaKnown RBP7.82□□□□□ -1.16
UPF3B-203ENST00000478840 SNRPBP14678 240 aaKnown RBP7.82□□□□□ -1.16
UPF3B-203ENST00000478840 NFKB1P19838 968 aa7.82□□□□□ -1.16
UPF3B-203ENST00000478840 ITPKAP23677 461 aa7.82□□□□□ -1.16
UPF3B-203ENST00000478840 PTSQ03393 145 aa7.82□□□□□ -1.16
UPF3B-203ENST00000478840 PLAURQ03405 335 aa7.82□□□□□ -1.16
UPF3B-203ENST00000478840 FAM182BQ5T319 152 aa7.82□□□□□ -1.16
UPF3B-203ENST00000478840 COL13A1Q5TAT6 717 aaPredicted RBP7.82□□□□□ -1.16
UPF3B-203ENST00000478840 GIMAP6Q6P9H5 292 aa7.82□□□□□ -1.16
UPF3B-203ENST00000478840 KIAA0825Q8IV33 1275 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 121.8 ms