RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 LIG1P18858 919 aa21.37■■□□□ 1.01
CCM2-209ENST00000477605 TPRNQ4KMQ1 711 aa21.37■■□□□ 1.01
CCM2-209ENST00000477605 DNTTIP2Q5QJE6 756 aaKnown RBP21.37■■□□□ 1.01
CCM2-209ENST00000477605 UBE3BQ7Z3V4 1068 aa21.37■■□□□ 1.01
CCM2-209ENST00000477605 KBTBD3Q8NAB2 608 aa21.37■■□□□ 1.01
CCM2-209ENST00000477605 MEGF6O75095 1541 aa21.37■■□□□ 1.01
CCM2-209ENST00000477605 COL9A3Q14050 684 aaPredicted RBP21.36■■□□□ 1.01
CCM2-209ENST00000477605 TCEANC2Q96MN5 208 aa21.36■■□□□ 1.01
CCM2-209ENST00000477605 HELLSQ9NRZ9 838 aa21.36■■□□□ 1.01
CCM2-209ENST00000477605 CFAP45Q9UL16 551 aa21.36■■□□□ 1.01
CCM2-209ENST00000477605 MRVI1Q9Y6F6 885 aa21.36■■□□□ 1.01
CCM2-209ENST00000477605 ZNF609O15014 1411 aa21.36■■□□□ 1.01
CCM2-209ENST00000477605 PALLDQ8WX93 1383 aa21.36■■□□□ 1.01
CCM2-209ENST00000477605 RESTQ13127 1097 aa21.36■■□□□ 1.01
CCM2-209ENST00000477605 EDC3Q96F86 508 aaKnown RBP21.36■■□□□ 1.01
CCM2-209ENST00000477605 ZNF830Q96NB3 372 aaPredicted RBP21.36■■□□□ 1.01
CCM2-209ENST00000477605 DACT1Q9NYF0 836 aa21.36■■□□□ 1.01
CCM2-209ENST00000477605 GTF2F1P35269 517 aaKnown RBP eCLIP21.35■■□□□ 1.01
CCM2-209ENST00000477605 SMARCC2Q8TAQ2 1214 aa21.35■■□□□ 1.01
CCM2-209ENST00000477605 DBNDD2Q9BQY9 259 aa21.35■■□□□ 1.01
CCM2-209ENST00000477605 DSCC1Q9BVC3 393 aa21.35■■□□□ 1.01
CCM2-209ENST00000477605 KIF3AQ9Y496 699 aa21.35■■□□□ 1.01
CCM2-209ENST00000477605 H7C1W4 665 aa21.35■■□□□ 1.01
CCM2-209ENST00000477605 AP5Z1O43299 807 aa21.35■■□□□ 1.01
CCM2-209ENST00000477605 ATL3Q6DD88 541 aa21.35■■□□□ 1.01
CCM2-209ENST00000477605 Q6ZUG5 572 aa21.35■■□□□ 1.01
CCM2-209ENST00000477605 KIAA1524Q8TCG1 905 aa21.35■■□□□ 1.01
CCM2-209ENST00000477605 FAM13BQ9NYF5 915 aa21.35■■□□□ 1.01
CCM2-209ENST00000477605 PFKFB2O60825 505 aa21.34■■□□□ 1.01
CCM2-209ENST00000477605 CYP21A2P08686 494 aa21.34■■□□□ 1.01
CCM2-209ENST00000477605 STK3Q13188 491 aa21.34■■□□□ 1.01
CCM2-209ENST00000477605 COL22A1Q8NFW1 1626 aaPredicted RBP21.34■■□□□ 1.01
CCM2-209ENST00000477605 CYP27B1O15528 508 aa21.33■■□□□ 1.01
CCM2-209ENST00000477605 RBM10P98175 930 aaKnown RBP21.33■■□□□ 1.01
CCM2-209ENST00000477605 NAA16Q6N069 864 aaPredicted RBP21.33■■□□□ 1.01
CCM2-209ENST00000477605 FAM173BQ6P4H8 233 aa21.33■■□□□ 1.01
CCM2-209ENST00000477605 DNAJC2Q99543 621 aaKnown RBP21.33■■□□□ 1.01
CCM2-209ENST00000477605 H3BQV1 296 aa21.33■■□□□ 1
CCM2-209ENST00000477605 CABP4P57796 275 aa21.33■■□□□ 1
CCM2-209ENST00000477605 PLCB2Q00722 1185 aa21.33■■□□□ 1
CCM2-209ENST00000477605 IFFO2Q5TF58 517 aa21.33■■□□□ 1
CCM2-209ENST00000477605 DHX32Q7L7V1 743 aaKnown RBP21.33■■□□□ 1
CCM2-209ENST00000477605 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.33■■□□□ 1
CCM2-209ENST00000477605 BRF1Q92994 677 aa21.33■■□□□ 1
CCM2-209ENST00000477605 TFIP11Q9UBB9 837 aaKnown RBP21.33■■□□□ 1
CCM2-209ENST00000477605 RGPD5Q99666 1765 aa21.33■■□□□ 1
CCM2-209ENST00000477605 CSB-PGBD3P0DP91 1061 aa21.32■■□□□ 1
CCM2-209ENST00000477605 DTNBO60941 627 aa21.32■■□□□ 1
CCM2-209ENST00000477605 HSP90B1P14625 803 aaKnown RBP21.32■■□□□ 1
CCM2-209ENST00000477605 IL15P40933 162 aaPredicted RBP21.32■■□□□ 1
CCM2-209ENST00000477605 FOXO4P98177 505 aa21.32■■□□□ 1
CCM2-209ENST00000477605 LMBR1LQ6UX01 489 aa21.32■■□□□ 1
CCM2-209ENST00000477605 TDRD7Q8NHU6 1098 aaKnown RBP21.32■■□□□ 1
CCM2-209ENST00000477605 AGXT2Q9BYV1 514 aa21.32■■□□□ 1
CCM2-209ENST00000477605 ATG3Q9NT62 314 aa21.32■■□□□ 1
CCM2-209ENST00000477605 SPATA31A3Q5VYP0 1347 aa21.32■■□□□ 1
CCM2-209ENST00000477605 COL18A1P39060 1754 aa21.31■■□□□ 1
CCM2-209ENST00000477605 JAK2O60674 1132 aa21.31■■□□□ 1
CCM2-209ENST00000477605 ZNF772Q68DY9 489 aaPredicted RBP21.31■■□□□ 1
CCM2-209ENST00000477605 CTAGE5O15320 804 aa21.3■■□□□ 1
CCM2-209ENST00000477605 ADAMTS2O95450 1211 aa21.3■■□□□ 1
CCM2-209ENST00000477605 CAMK4Q16566 473 aa21.3■■□□□ 1
CCM2-209ENST00000477605 PGBD1Q96JS3 809 aa21.3■■□□□ 1
CCM2-209ENST00000477605 CBX8Q9HC52 389 aa21.3■■□□□ 1
CCM2-209ENST00000477605 BICD2Q8TD16 824 aa21.3■■□□□ 1
CCM2-209ENST00000477605 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.3■■□□□ 1
CCM2-209ENST00000477605 PKD1L3Q7Z443 1732 aa21.3■■□□□ 1
CCM2-209ENST00000477605 ATP5J2-PTCD1G3V325 749 aa21.29■■□□□ 1
CCM2-209ENST00000477605 PTCD1O75127 700 aaKnown RBP21.29■■□□□ 1
CCM2-209ENST00000477605 EXOSC10Q01780 885 aaKnown RBP21.29■■□□□ 1
CCM2-209ENST00000477605 SCRN1Q12765 414 aa21.29■■□□□ 1
CCM2-209ENST00000477605 ANO6Q4KMQ2 910 aa21.29■■□□□ 1
CCM2-209ENST00000477605 ZMYM1Q5SVZ6 1142 aa21.29■■□□□ 1
CCM2-209ENST00000477605 CCDC129Q6ZRS4 1044 aa21.29■■□□□ 1
CCM2-209ENST00000477605 ATG9AQ7Z3C6 839 aa21.29■■□□□ 1
CCM2-209ENST00000477605 MPNDQ8N594 471 aa21.29■■□□□ 1
CCM2-209ENST00000477605 C8orf37Q96NL8 207 aa21.29■■□□□ 1
CCM2-209ENST00000477605 KCNF1Q9H3M0 494 aa21.29■■□□□ 1
CCM2-209ENST00000477605 PAG1Q9NWQ8 432 aa21.29■■□□□ 1
CCM2-209ENST00000477605 CWC25Q9NXE8 425 aaPredicted RBP21.29■■□□□ 1
CCM2-209ENST00000477605 AFF2P51816 1311 aa21.29■■□□□ 1
CCM2-209ENST00000477605 FGD1P98174 961 aa21.28■■□□□ 1
CCM2-209ENST00000477605 DDX46Q7L014 1031 aaKnown RBP21.28■■□□□ 1
CCM2-209ENST00000477605 FBXL16Q8N461 479 aa21.28■■□□□ 1
CCM2-209ENST00000477605 JARID2Q92833 1246 aaPredicted RBP21.28■■□□□ 1
CCM2-209ENST00000477605 SEC62Q99442 399 aaKnown RBP21.28■■□□□ 1
CCM2-209ENST00000477605 RCOR1Q9UKL0 485 aa21.28■■□□□ 1
CCM2-209ENST00000477605 CHMP3Q9Y3E7 222 aa21.28■■□□□ 1
CCM2-209ENST00000477605 ARFGEF2Q9Y6D5 1785 aa21.28■■□□□ 1
CCM2-209ENST00000477605 CPDO75976 1380 aa21.28■■□□□ 1
CCM2-209ENST00000477605 CIAO1O76071 339 aa21.28■■□□□ 1
CCM2-209ENST00000477605 CKAP2LQ8IYA6 745 aa21.27■■□□□ 1
CCM2-209ENST00000477605 NSUN7Q8NE18 718 aaKnown RBP21.27■■□□□ 1
CCM2-209ENST00000477605 NR1I2O75469 434 aa21.27■□□□□ 0.99
CCM2-209ENST00000477605 LRRFIP1Q32MZ4 808 aaKnown RBP21.27■□□□□ 0.99
CCM2-209ENST00000477605 STOX1Q6ZVD7 989 aa21.27■□□□□ 0.99
CCM2-209ENST00000477605 LUZP1Q86V48 1076 aa21.27■□□□□ 0.99
CCM2-209ENST00000477605 PLA2G4DQ86XP0 818 aa21.27■□□□□ 0.99
CCM2-209ENST00000477605 CCDC191Q8NCU4 936 aa21.27■□□□□ 0.99
CCM2-209ENST00000477605 ZNF274Q96GC6 653 aaPredicted RBP21.27■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms