RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 MPSTP25325 297 aa9.09□□□□□ -0.95
VPS50-213ENST00000477572 FMR1NBQ8N0W7 255 aaPredicted RBP9.09□□□□□ -0.95
VPS50-213ENST00000477572 NACC1Q96RE7 527 aa9.09□□□□□ -0.95
VPS50-213ENST00000477572 ANO2Q9NQ90 1003 aa9.09□□□□□ -0.95
VPS50-213ENST00000477572 SOX18P35713 384 aa9.08□□□□□ -0.96
VPS50-213ENST00000477572 NOM1Q5C9Z4 860 aaKnown RBP9.08□□□□□ -0.96
VPS50-213ENST00000477572 PHLDB3Q6NSJ2 640 aa9.08□□□□□ -0.96
VPS50-213ENST00000477572 OR13H1Q8NG92 308 aa9.08□□□□□ -0.96
VPS50-213ENST00000477572 TRIM33Q9UPN9 1127 aa9.08□□□□□ -0.96
VPS50-213ENST00000477572 EIF1AXP47813 144 aaKnown RBP9.07□□□□□ -0.96
VPS50-213ENST00000477572 ATP11AP98196 1134 aa9.07□□□□□ -0.96
VPS50-213ENST00000477572 C8orf34Q49A92 452 aa9.07□□□□□ -0.96
VPS50-213ENST00000477572 ILDR2Q71H61 639 aa9.07□□□□□ -0.96
VPS50-213ENST00000477572 IL22RA1Q8N6P7 574 aa9.07□□□□□ -0.96
VPS50-213ENST00000477572 RBSNQ9H1K0 784 aa9.07□□□□□ -0.96
VPS50-213ENST00000477572 ELP3Q9H9T3 547 aa9.07□□□□□ -0.96
VPS50-213ENST00000477572 TPSG1Q9NRR2 321 aa9.07□□□□□ -0.96
VPS50-213ENST00000477572 ABI2Q9NYB9 513 aaPredicted RBP9.07□□□□□ -0.96
VPS50-213ENST00000477572 TMEM63CQ9P1W3 806 aa9.07□□□□□ -0.96
VPS50-213ENST00000477572 USP21Q9UK80 565 aa9.07□□□□□ -0.96
VPS50-213ENST00000477572 C9orf172C9J069 976 aa9.06□□□□□ -0.96
VPS50-213ENST00000477572 ABL1P00519 1130 aa9.06□□□□□ -0.96
VPS50-213ENST00000477572 HYAL2Q12891 473 aa9.06□□□□□ -0.96
VPS50-213ENST00000477572 AAMPQ13685 434 aa9.06□□□□□ -0.96
VPS50-213ENST00000477572 MBTPS1Q14703 1052 aa9.06□□□□□ -0.96
VPS50-213ENST00000477572 ZNF438Q7Z4V0 828 aa9.06□□□□□ -0.96
VPS50-213ENST00000477572 TTC9Q92623 222 aa9.06□□□□□ -0.96
VPS50-213ENST00000477572 GGNBP2Q9H3C7 697 aa9.06□□□□□ -0.96
VPS50-213ENST00000477572 SEMA6BQ9H3T3 888 aa9.06□□□□□ -0.96
VPS50-213ENST00000477572 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.06□□□□□ -0.96
VPS50-213ENST00000477572 DEAF1O75398 565 aaPredicted RBP9.05□□□□□ -0.96
VPS50-213ENST00000477572 ZNF211Q13398 564 aaPredicted RBP9.05□□□□□ -0.96
VPS50-213ENST00000477572 LACRTQ9GZZ8 138 aa9.05□□□□□ -0.96
VPS50-213ENST00000477572 CNTN3Q9P232 1028 aa9.05□□□□□ -0.96
VPS50-213ENST00000477572 KANSL3Q9P2N6 904 aa9.05□□□□□ -0.96
VPS50-213ENST00000477572 PDGFAP04085 211 aa9.04□□□□□ -0.96
VPS50-213ENST00000477572 HOXD8P13378 290 aaPredicted RBP9.04□□□□□ -0.96
VPS50-213ENST00000477572 CDC25BP30305 580 aa9.04□□□□□ -0.96
VPS50-213ENST00000477572 FBXO11Q86XK2 927 aa9.04□□□□□ -0.96
VPS50-213ENST00000477572 LENG1Q96BZ8 264 aaPredicted RBP9.04□□□□□ -0.96
VPS50-213ENST00000477572 ADGRE1Q14246 886 aa9.03□□□□□ -0.96
VPS50-213ENST00000477572 CEP135Q66GS9 1140 aa9.03□□□□□ -0.96
VPS50-213ENST00000477572 NCAPG2Q86XI2 1143 aa9.03□□□□□ -0.96
VPS50-213ENST00000477572 SPACA7Q96KW9 195 aa9.03□□□□□ -0.96
VPS50-213ENST00000477572 RASSF4Q9H2L5 321 aa9.03□□□□□ -0.96
VPS50-213ENST00000477572 POLIQ9UNA4 740 aa9.03□□□□□ -0.96
VPS50-213ENST00000477572 LOC100996750A0A140TA64 210 aa9.02□□□□□ -0.97
VPS50-213ENST00000477572 PCSK2P16519 638 aa9.02□□□□□ -0.97
VPS50-213ENST00000477572 TXNDC11Q6PKC3 985 aa9.02□□□□□ -0.97
VPS50-213ENST00000477572 TTC16Q8NEE8 873 aa9.02□□□□□ -0.97
VPS50-213ENST00000477572 KRTAP4-6Q9BYQ5 205 aa9.02□□□□□ -0.97
VPS50-213ENST00000477572 TIMELESSQ9UNS1 1208 aa9.02□□□□□ -0.97
VPS50-213ENST00000477572 ACPPP15309 386 aa9.01□□□□□ -0.97
VPS50-213ENST00000477572 MZF1P28698 734 aaPredicted RBP9.01□□□□□ -0.97
VPS50-213ENST00000477572 RSPO4Q2I0M5 234 aaPredicted RBP9.01□□□□□ -0.97
VPS50-213ENST00000477572 PDE12Q6L8Q7 609 aaKnown RBP9.01□□□□□ -0.97
VPS50-213ENST00000477572 ADAMTSL4Q6UY14 1074 aa9.01□□□□□ -0.97
VPS50-213ENST00000477572 TXNRD3Q86VQ6 643 aa9.01□□□□□ -0.97
VPS50-213ENST00000477572 DTWD1Q8N5C7 304 aa9.01□□□□□ -0.97
VPS50-213ENST00000477572 C1orf127Q8N9H9 656 aa9.01□□□□□ -0.97
VPS50-213ENST00000477572 ITGB7P26010 798 aa9□□□□□ -0.97
VPS50-213ENST00000477572 IREB2P48200 963 aaKnown RBP9□□□□□ -0.97
VPS50-213ENST00000477572 NRG1Q02297 640 aaPredicted RBP9□□□□□ -0.97
VPS50-213ENST00000477572 MTMR7Q9Y216 660 aa9□□□□□ -0.97
VPS50-213ENST00000477572 LINC01387J3KSC0 135 aa8.99□□□□□ -0.97
VPS50-213ENST00000477572 TRPA1O75762 1119 aa8.99□□□□□ -0.97
VPS50-213ENST00000477572 CES1P23141 567 aa8.99□□□□□ -0.97
VPS50-213ENST00000477572 CCDC87Q9NVE4 849 aa8.99□□□□□ -0.97
VPS50-213ENST00000477572 DLL1O00548 723 aa8.98□□□□□ -0.97
VPS50-213ENST00000477572 SMNDC1O75940 238 aaKnown RBP eCLIP8.98□□□□□ -0.97
VPS50-213ENST00000477572 FAM13AO94988 1023 aa8.98□□□□□ -0.97
VPS50-213ENST00000477572 KIF4AO95239 1232 aa8.98□□□□□ -0.97
VPS50-213ENST00000477572 SERPINB4P48594 390 aa8.98□□□□□ -0.97
VPS50-213ENST00000477572 FKBP4Q02790 459 aaKnown RBP eCLIP8.98□□□□□ -0.97
VPS50-213ENST00000477572 SETDB1Q15047 1291 aa8.98□□□□□ -0.97
VPS50-213ENST00000477572 NKAPLQ5M9Q1 402 aa8.98□□□□□ -0.97
VPS50-213ENST00000477572 ALKBH2Q6NS38 261 aa8.98□□□□□ -0.97
VPS50-213ENST00000477572 CEP120Q8N960 986 aa8.98□□□□□ -0.97
VPS50-213ENST00000477572 WFDC12Q8WWY7 111 aa8.98□□□□□ -0.97
VPS50-213ENST00000477572 SH2B1Q9NRF2 756 aaPredicted RBP8.98□□□□□ -0.97
VPS50-213ENST00000477572 PPME1Q9Y570 386 aa8.98□□□□□ -0.97
VPS50-213ENST00000477572 ALX3O95076 343 aa8.97□□□□□ -0.97
VPS50-213ENST00000477572 RPLP1P05386 114 aaKnown RBP8.97□□□□□ -0.97
VPS50-213ENST00000477572 NOS3P29474 1203 aa8.97□□□□□ -0.97
VPS50-213ENST00000477572 IGF2-ASQ6U949 168 aa8.97□□□□□ -0.97
VPS50-213ENST00000477572 POP1Q99575 1024 aaKnown RBP8.97□□□□□ -0.97
VPS50-213ENST00000477572 PBX4Q9BYU1 374 aa8.97□□□□□ -0.97
VPS50-213ENST00000477572 USTQ9Y2C2 406 aa8.97□□□□□ -0.97
VPS50-213ENST00000477572 FZD6O60353 706 aa8.96□□□□□ -0.98
VPS50-213ENST00000477572 CDC27P30260 824 aa8.96□□□□□ -0.98
VPS50-213ENST00000477572 RETREG2Q8NC44 543 aa8.96□□□□□ -0.98
VPS50-213ENST00000477572 TP53INP1Q96A56 240 aa8.96□□□□□ -0.98
VPS50-213ENST00000477572 HHIPQ96QV1 700 aa8.96□□□□□ -0.98
VPS50-213ENST00000477572 CARD10Q9BWT7 1032 aa8.96□□□□□ -0.98
VPS50-213ENST00000477572 CHRDQ9H2X0 955 aa8.96□□□□□ -0.98
VPS50-213ENST00000477572 FOXD3Q9UJU5 478 aaPredicted RBP8.96□□□□□ -0.98
VPS50-213ENST00000477572 DYRK3O43781 588 aa8.95□□□□□ -0.98
VPS50-213ENST00000477572 NPR3P17342 541 aa8.95□□□□□ -0.98
VPS50-213ENST00000477572 SF3B2Q13435 895 aaKnown RBP8.95□□□□□ -0.98
VPS50-213ENST00000477572 XKR5Q6UX68 686 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms