RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ABT1Q9ULW3 272 aaKnown RBP15.8■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 MAP3K2Q9Y2U5 619 aa15.8■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 PSME4Q14997 1843 aa15.8■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 RIMBP2O15034 1052 aa15.79■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 ECE2O60344 883 aa15.79■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 VIL1P09327 827 aaKnown RBP15.79■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 RPS12P25398 132 aaKnown RBP15.79■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 MAP2K1Q02750 393 aaPredicted RBP15.79■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 CCDC152Q4G0S7 254 aa15.79■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 SAPCD2Q86UD0 394 aa15.79■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 MICALL2Q8IY33 904 aa15.79■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 HHIPL1Q96JK4 782 aa15.79■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 CAPNS2Q96L46 248 aa15.79■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 EYA3Q99504 573 aa15.79■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 ZNF609O15014 1411 aa15.78■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 H7C1D1 291 aa15.78■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 EGFRP00533 1210 aa15.78■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 DOK7Q18PE1 504 aa15.78■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 CDC37L1Q7L3B6 337 aa15.78■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 G2E3Q7L622 706 aa15.78■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 TTLL11Q8NHH1 800 aa15.78■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 GPR101Q96P66 508 aaPredicted RBP15.78■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 H7C1W4 665 aa15.77■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 CELF2O95319 508 aaKnown RBP15.77■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 HSPA8P11142 646 aaKnown RBP15.77■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 TWISTNBQ3B726 338 aaPredicted RBP15.77■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 CYP4F22Q6NT55 531 aa15.77■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 SAMD7Q7Z3H4 446 aa15.77■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 ZC3H12CQ9C0D7 883 aaKnown RBP15.77■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 NEURL1BA8MQ27 555 aa15.76■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 MAP2K2P36507 400 aa15.76■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 ECE1P42892 770 aa15.76■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 LBX1P52954 281 aa15.76■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 CTSWP56202 376 aa15.76■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 AIDAQ96BJ3 306 aa15.76■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 GGA1Q9UJY5 639 aa15.76■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 WTIPA6NIX2 430 aaPredicted RBP15.75■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 UFL1O94874 794 aa15.75■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 SLC4A2P04920 1241 aa15.75■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 CASP7P55210 303 aa15.75■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 CWF19L2Q2TBE0 894 aaKnown RBP15.75■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 GMLQ99445 158 aa15.75■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 PLA2G12BQ9BX93 195 aa15.75■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 STK31Q9BXU1 1019 aa15.75■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 BSDC1Q9NW68 430 aaPredicted RBP15.75■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 ANKIB1Q9P2G1 1089 aa15.75■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 XDHP47989 1333 aa15.74■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 ZNF646O15015 1829 aaPredicted RBP15.74■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 VAMP4O75379 141 aa15.74■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 ZNF280AP59817 542 aaPredicted RBP15.74■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 DLK2Q6UY11 383 aa15.74■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 USP48Q86UV5 1035 aa15.74■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 ANKRD18AQ8IVF6 992 aa15.74■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 WDR63Q8IWG1 891 aa15.74■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 CCDC85AQ96PX6 553 aaPredicted RBP15.74■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 MINPP1Q9UNW1 487 aa15.74■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 TBC1D10BQ4KMP7 808 aaPredicted RBP15.73■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 AGBL3Q8NEM8 1001 aa15.73■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 GREM2Q9H772 168 aa15.73■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 FANCIQ9NVI1 1328 aa15.72■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 AOC2O75106 756 aa15.72■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 CSF1RP07333 972 aa15.72■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 ATP2B4P23634 1241 aa15.72■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 NEXNQ0ZGT2 675 aa15.72■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 FLIIQ13045 1269 aa15.72■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 GCKRQ14397 625 aa15.72■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 RSBN1LQ6PCB5 846 aaPredicted RBP15.72■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 PODNQ7Z5L7 613 aa15.72■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 CDC5LQ99459 802 aaKnown RBP15.72■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 MRS2Q9HD23 443 aa15.72■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 SPEF2Q9C093 1822 aa15.71■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 CAPN15O75808 1086 aa15.71■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 ZEB1P37275 1124 aaPredicted RBP15.71■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 KRT26Q7Z3Y9 468 aa15.71■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 SPINK5Q9NQ38 1064 aaPredicted RBP15.71■□□□□ 0.11
MSH5-SAPCD1-205ENST00000476085 ZNF316A6NFI3 1004 aaPredicted RBP15.7■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 KIF4BQ2VIQ3 1234 aa15.7■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 UBE3BQ7Z3V4 1068 aa15.7■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 DNAAF4Q8WXU2 420 aa15.7■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 MED23Q9ULK4 1368 aa15.7■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 ASTN2O75129 1339 aaPredicted RBP15.69■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 CCT4P50991 539 aaKnown RBP15.69■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 BRPF1P55201 1214 aaPredicted RBP15.69■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 RBM26Q5T8P6 1007 aaKnown RBP15.69■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 LINS1Q8NG48 757 aa15.69■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 ZIC5Q96T25 663 aa15.69■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 USP17L3A6NCW0 530 aa15.68■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 USP17L4A6NCW7 530 aa15.68■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 FAM155AB1AL88 458 aaPredicted RBP15.68■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 ADM5C9JUS6 153 aa15.68■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 EXOSC9Q06265 439 aaKnown RBP15.68■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 PAXIP1Q6ZW49 1069 aaPredicted RBP15.68■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 USP17L1Q7RTZ2 530 aa15.68■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 TXNRD3Q86VQ6 643 aa15.68■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 DCPSQ96C86 337 aaKnown RBP15.68■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 LEMD3Q9Y2U8 911 aa15.68■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 CASP8AP2Q9UKL3 1982 aa15.67■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 ANP32CO43423 234 aa15.67■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 ITGA6P23229 1130 aa15.67■□□□□ 0.1
MSH5-SAPCD1-205ENST00000476085 HUNKP57058 714 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms