RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 ZBTB22O15209 634 aa9.05□□□□□ -0.96
HDAC3-207ENST00000475549 ECE2O60344 883 aa9.05□□□□□ -0.96
HDAC3-207ENST00000475549 PDE8AO60658 829 aa9.05□□□□□ -0.96
HDAC3-207ENST00000475549 VAMP4O75379 141 aa9.05□□□□□ -0.96
HDAC3-207ENST00000475549 SLC4A2P04920 1241 aa9.05□□□□□ -0.96
HDAC3-207ENST00000475549 TWISTNBQ3B726 338 aaPredicted RBP9.05□□□□□ -0.96
HDAC3-207ENST00000475549 CYP4F22Q6NT55 531 aa9.05□□□□□ -0.96
HDAC3-207ENST00000475549 SAPCD2Q86UD0 394 aa9.05□□□□□ -0.96
HDAC3-207ENST00000475549 MICALL2Q8IY33 904 aa9.05□□□□□ -0.96
HDAC3-207ENST00000475549 TTLL11Q8NHH1 800 aa9.05□□□□□ -0.96
HDAC3-207ENST00000475549 ZC3H15Q8WU90 426 aaKnown RBP9.05□□□□□ -0.96
HDAC3-207ENST00000475549 BCL2L13Q9BXK5 485 aa9.05□□□□□ -0.96
HDAC3-207ENST00000475549 MRS2Q9HD23 443 aa9.05□□□□□ -0.96
HDAC3-207ENST00000475549 TLL2Q9Y6L7 1015 aa9.05□□□□□ -0.96
HDAC3-207ENST00000475549 CDHR2Q9BYE9 1310 aa9.05□□□□□ -0.96
HDAC3-207ENST00000475549 NEURL1BA8MQ27 555 aa9.04□□□□□ -0.96
HDAC3-207ENST00000475549 CAPN15O75808 1086 aa9.04□□□□□ -0.96
HDAC3-207ENST00000475549 CELF2O95319 508 aaKnown RBP9.04□□□□□ -0.96
HDAC3-207ENST00000475549 DDX58O95786 925 aaKnown RBP9.04□□□□□ -0.96
HDAC3-207ENST00000475549 VIL1P09327 827 aaKnown RBP9.04□□□□□ -0.96
HDAC3-207ENST00000475549 CCDC152Q4G0S7 254 aa9.04□□□□□ -0.96
HDAC3-207ENST00000475549 ZC3H12CQ9C0D7 883 aaKnown RBP9.04□□□□□ -0.96
HDAC3-207ENST00000475549 GREM2Q9H772 168 aa9.04□□□□□ -0.96
HDAC3-207ENST00000475549 ANKIB1Q9P2G1 1089 aa9.04□□□□□ -0.96
HDAC3-207ENST00000475549 SALL2Q9Y467 1007 aaPredicted RBP9.04□□□□□ -0.96
HDAC3-207ENST00000475549 IL16Q14005 1332 aa9.04□□□□□ -0.96
HDAC3-207ENST00000475549 FANCIQ9NVI1 1328 aa9.04□□□□□ -0.96
HDAC3-207ENST00000475549 ZNF316A6NFI3 1004 aaPredicted RBP9.03□□□□□ -0.96
HDAC3-207ENST00000475549 H7C1D1 291 aa9.03□□□□□ -0.96
HDAC3-207ENST00000475549 AOC2O75106 756 aa9.03□□□□□ -0.96
HDAC3-207ENST00000475549 UFL1O94874 794 aa9.03□□□□□ -0.96
HDAC3-207ENST00000475549 LBX1P52954 281 aa9.03□□□□□ -0.96
HDAC3-207ENST00000475549 CASP7P55210 303 aa9.03□□□□□ -0.96
HDAC3-207ENST00000475549 CTSWP56202 376 aa9.03□□□□□ -0.96
HDAC3-207ENST00000475549 TBC1D10BQ4KMP7 808 aaPredicted RBP9.03□□□□□ -0.96
HDAC3-207ENST00000475549 RBM26Q5T8P6 1007 aaKnown RBP9.03□□□□□ -0.96
HDAC3-207ENST00000475549 CDC37L1Q7L3B6 337 aa9.03□□□□□ -0.96
HDAC3-207ENST00000475549 USP48Q86UV5 1035 aa9.03□□□□□ -0.96
HDAC3-207ENST00000475549 CAPNS2Q96L46 248 aa9.03□□□□□ -0.96
HDAC3-207ENST00000475549 PRDM10Q9NQV6 1147 aa9.03□□□□□ -0.96
HDAC3-207ENST00000475549 MINPP1Q9UNW1 487 aa9.03□□□□□ -0.96
HDAC3-207ENST00000475549 ASTN2O75129 1339 aaPredicted RBP9.03□□□□□ -0.96
HDAC3-207ENST00000475549 DDX60Q8IY21 1712 aaKnown RBP9.02□□□□□ -0.96
HDAC3-207ENST00000475549 TAF1P21675 1872 aa9.02□□□□□ -0.96
HDAC3-207ENST00000475549 LAMB2P55268 1798 aa9.02□□□□□ -0.97
HDAC3-207ENST00000475549 ANKRD36CQ5JPF3 1778 aa9.02□□□□□ -0.97
HDAC3-207ENST00000475549 HSPA8P11142 646 aaKnown RBP9.02□□□□□ -0.97
HDAC3-207ENST00000475549 HSP90B1P14625 803 aaKnown RBP9.02□□□□□ -0.97
HDAC3-207ENST00000475549 RPS12P25398 132 aaKnown RBP9.02□□□□□ -0.97
HDAC3-207ENST00000475549 CTCFP49711 727 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-207ENST00000475549 EXOSC9Q06265 439 aaKnown RBP9.02□□□□□ -0.97
HDAC3-207ENST00000475549 FLIIQ13045 1269 aa9.02□□□□□ -0.97
HDAC3-207ENST00000475549 GCKRQ14397 625 aa9.02□□□□□ -0.97
HDAC3-207ENST00000475549 UBE3BQ7Z3V4 1068 aa9.02□□□□□ -0.97
HDAC3-207ENST00000475549 TXNRD3Q86VQ6 643 aa9.02□□□□□ -0.97
HDAC3-207ENST00000475549 ANKRD18AQ8IVF6 992 aa9.02□□□□□ -0.97
HDAC3-207ENST00000475549 WDR63Q8IWG1 891 aa9.02□□□□□ -0.97
HDAC3-207ENST00000475549 ZIC5Q96T25 663 aa9.02□□□□□ -0.97
HDAC3-207ENST00000475549 GMLQ99445 158 aa9.02□□□□□ -0.97
HDAC3-207ENST00000475549 EYA3Q99504 573 aa9.02□□□□□ -0.97
HDAC3-207ENST00000475549 STK31Q9BXU1 1019 aa9.02□□□□□ -0.97
HDAC3-207ENST00000475549 CHMP4AQ9BY43 222 aa9.02□□□□□ -0.97
HDAC3-207ENST00000475549 BSDC1Q9NW68 430 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-207ENST00000475549 GGA1Q9UJY5 639 aa9.02□□□□□ -0.97
HDAC3-207ENST00000475549 LRRC37AA6NMS7 1700 aa9.01□□□□□ -0.97
HDAC3-207ENST00000475549 ANP32CO43423 234 aa9.01□□□□□ -0.97
HDAC3-207ENST00000475549 CSF1RP07333 972 aa9.01□□□□□ -0.97
HDAC3-207ENST00000475549 ZNF280AP59817 542 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-207ENST00000475549 MAP2K1Q02750 393 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-207ENST00000475549 GRM1Q13255 1194 aa9.01□□□□□ -0.97
HDAC3-207ENST00000475549 MXD3Q9BW11 206 aa9.01□□□□□ -0.97
HDAC3-207ENST00000475549 PLA2G12BQ9BX93 195 aa9.01□□□□□ -0.97
HDAC3-207ENST00000475549 ZNF408Q9H9D4 720 aa9.01□□□□□ -0.97
HDAC3-207ENST00000475549 XDHP47989 1333 aa9.01□□□□□ -0.97
HDAC3-207ENST00000475549 ADM5C9JUS6 153 aa9□□□□□ -0.97
HDAC3-207ENST00000475549 F6X3S4 739 aa9□□□□□ -0.97
HDAC3-207ENST00000475549 ATP2B4P23634 1241 aa9□□□□□ -0.97
HDAC3-207ENST00000475549 KLRK1P26718 216 aa9□□□□□ -0.97
HDAC3-207ENST00000475549 MAP2K2P36507 400 aa9□□□□□ -0.97
HDAC3-207ENST00000475549 ZEB1P37275 1124 aaPredicted RBP9□□□□□ -0.97
HDAC3-207ENST00000475549 NEXNQ0ZGT2 675 aa9□□□□□ -0.97
HDAC3-207ENST00000475549 BEND3Q5T5X7 828 aa9□□□□□ -0.97
HDAC3-207ENST00000475549 RSBN1LQ6PCB5 846 aaPredicted RBP9□□□□□ -0.97
HDAC3-207ENST00000475549 PAXIP1Q6ZW49 1069 aaPredicted RBP9□□□□□ -0.97
HDAC3-207ENST00000475549 KRT26Q7Z3Y9 468 aa9□□□□□ -0.97
HDAC3-207ENST00000475549 DNAAF4Q8WXU2 420 aa9□□□□□ -0.97
HDAC3-207ENST00000475549 AIDAQ96BJ3 306 aa9□□□□□ -0.97
HDAC3-207ENST00000475549 HHIPL1Q96JK4 782 aa9□□□□□ -0.97
HDAC3-207ENST00000475549 TSKSQ9UJT2 592 aa9□□□□□ -0.97
HDAC3-207ENST00000475549 FAM155AB1AL88 458 aaPredicted RBP8.99□□□□□ -0.97
HDAC3-207ENST00000475549 SNAP23O00161 211 aa8.99□□□□□ -0.97
HDAC3-207ENST00000475549 ITGA6P23229 1130 aa8.99□□□□□ -0.97
HDAC3-207ENST00000475549 ECE1P42892 770 aa8.99□□□□□ -0.97
HDAC3-207ENST00000475549 CCT4P50991 539 aaKnown RBP8.99□□□□□ -0.97
HDAC3-207ENST00000475549 FOXO4P98177 505 aa8.99□□□□□ -0.97
HDAC3-207ENST00000475549 FKBP5Q13451 457 aaPredicted RBP8.99□□□□□ -0.97
HDAC3-207ENST00000475549 SCARF1Q14162 830 aa8.99□□□□□ -0.97
HDAC3-207ENST00000475549 KIF4BQ2VIQ3 1234 aa8.99□□□□□ -0.97
HDAC3-207ENST00000475549 FAM161AQ3B820 660 aa8.99□□□□□ -0.97
HDAC3-207ENST00000475549 EPHA10Q5JZY3 1008 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms