RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 CHPF2Q9P2E5 772 aa16.42■□□□□ 0.22
SKA3-206ENST00000475251 DBF4Q9UBU7 674 aaPredicted RBP16.42■□□□□ 0.22
SKA3-206ENST00000475251 G3V3G9 751 aa16.41■□□□□ 0.22
SKA3-206ENST00000475251 KIF23Q02241 960 aaPredicted RBP16.41■□□□□ 0.22
SKA3-206ENST00000475251 KIF4BQ2VIQ3 1234 aa16.41■□□□□ 0.22
SKA3-206ENST00000475251 RBM26Q5T8P6 1007 aaKnown RBP16.41■□□□□ 0.22
SKA3-206ENST00000475251 DCAF8Q5TAQ9 597 aa16.41■□□□□ 0.22
SKA3-206ENST00000475251 FAM89AQ96GI7 184 aa16.41■□□□□ 0.22
SKA3-206ENST00000475251 ZIC5Q96T25 663 aa16.41■□□□□ 0.22
SKA3-206ENST00000475251 ISCA1Q9BUE6 129 aa16.41■□□□□ 0.22
SKA3-206ENST00000475251 ZC3H12CQ9C0D7 883 aaKnown RBP16.41■□□□□ 0.22
SKA3-206ENST00000475251 POLLQ9UGP5 575 aa16.41■□□□□ 0.22
SKA3-206ENST00000475251 CHL1O00533 1208 aa16.4■□□□□ 0.22
SKA3-206ENST00000475251 GPSM2P81274 684 aa16.4■□□□□ 0.22
SKA3-206ENST00000475251 RALBP1Q15311 655 aa16.4■□□□□ 0.22
SKA3-206ENST00000475251 HYPKQ9NX55 129 aa16.4■□□□□ 0.22
SKA3-206ENST00000475251 ADM5C9JUS6 153 aa16.39■□□□□ 0.21
SKA3-206ENST00000475251 EGFRP00533 1210 aa16.39■□□□□ 0.21
SKA3-206ENST00000475251 SLC10A3P09131 477 aa16.39■□□□□ 0.21
SKA3-206ENST00000475251 RPS8P62241 208 aaKnown RBP16.39■□□□□ 0.21
SKA3-206ENST00000475251 DOK7Q18PE1 504 aa16.39■□□□□ 0.21
SKA3-206ENST00000475251 TBC1D16Q8TBP0 767 aa16.39■□□□□ 0.21
SKA3-206ENST00000475251 RNF186Q9NXI6 227 aa16.39■□□□□ 0.21
SKA3-206ENST00000475251 GGA3Q9NZ52 723 aa16.39■□□□□ 0.21
SKA3-206ENST00000475251 AKAP11Q9UKA4 1901 aa16.39■□□□□ 0.21
SKA3-206ENST00000475251 RTL9Q8NET4 1388 aa16.38■□□□□ 0.21
SKA3-206ENST00000475251 ATP5J2-PTCD1G3V325 749 aa16.38■□□□□ 0.21
SKA3-206ENST00000475251 IRS4O14654 1257 aaPredicted RBP16.38■□□□□ 0.21
SKA3-206ENST00000475251 TRPA1O75762 1119 aa16.38■□□□□ 0.21
SKA3-206ENST00000475251 VIL1P09327 827 aaKnown RBP16.38■□□□□ 0.21
SKA3-206ENST00000475251 FKBP1BP68106 108 aa16.38■□□□□ 0.21
SKA3-206ENST00000475251 TRIM28Q13263 835 aaKnown RBP16.38■□□□□ 0.21
SKA3-206ENST00000475251 PODXL2Q9NZ53 605 aa16.38■□□□□ 0.21
SKA3-206ENST00000475251 LAS1LQ9Y4W2 734 aaKnown RBP16.38■□□□□ 0.21
SKA3-206ENST00000475251 ZNF609O15014 1411 aa16.37■□□□□ 0.21
SKA3-206ENST00000475251 NEUROD2Q15784 382 aa16.37■□□□□ 0.21
SKA3-206ENST00000475251 DLK2Q6UY11 383 aa16.37■□□□□ 0.21
SKA3-206ENST00000475251 AGBL3Q8NEM8 1001 aa16.37■□□□□ 0.21
SKA3-206ENST00000475251 ANKIB1Q9P2G1 1089 aa16.37■□□□□ 0.21
SKA3-206ENST00000475251 POLR2AP24928 1970 aaKnown RBP16.37■□□□□ 0.21
SKA3-206ENST00000475251 UFL1O94874 794 aa16.36■□□□□ 0.21
SKA3-206ENST00000475251 KRT24Q2M2I5 525 aa16.36■□□□□ 0.21
SKA3-206ENST00000475251 CTU1Q7Z7A3 348 aaKnown RBP16.36■□□□□ 0.21
SKA3-206ENST00000475251 ZNF428Q96B54 188 aa16.36■□□□□ 0.21
SKA3-206ENST00000475251 CDCA5Q96FF9 252 aa16.36■□□□□ 0.21
SKA3-206ENST00000475251 GGA1Q9UJY5 639 aa16.36■□□□□ 0.21
SKA3-206ENST00000475251 ZNF280AP59817 542 aaPredicted RBP16.35■□□□□ 0.21
SKA3-206ENST00000475251 GOLGA2Q08379 1002 aa16.35■□□□□ 0.21
SKA3-206ENST00000475251 RTL5Q5HYW3 569 aaPredicted RBP16.35■□□□□ 0.21
SKA3-206ENST00000475251 ZBTB38Q8NAP3 1195 aaPredicted RBP16.35■□□□□ 0.21
SKA3-206ENST00000475251 CSRNP1Q96S65 589 aa16.35■□□□□ 0.21
SKA3-206ENST00000475251 KCNQ5Q9NR82 932 aa16.35■□□□□ 0.21
SKA3-206ENST00000475251 PITPNM2Q9BZ72 1349 aa16.35■□□□□ 0.21
SKA3-206ENST00000475251 PAPPA2Q9BXP8 1791 aa16.34■□□□□ 0.21
SKA3-206ENST00000475251 SOX10P56693 466 aa16.34■□□□□ 0.21
SKA3-206ENST00000475251 CCDC152Q4G0S7 254 aa16.34■□□□□ 0.21
SKA3-206ENST00000475251 ANGEL2Q5VTE6 544 aaKnown RBP16.34■□□□□ 0.21
SKA3-206ENST00000475251 RSBN1LQ6PCB5 846 aaPredicted RBP16.34■□□□□ 0.21
SKA3-206ENST00000475251 RIC3Q7Z5B4 369 aa16.34■□□□□ 0.21
SKA3-206ENST00000475251 RUNDC1Q96C34 613 aa16.34■□□□□ 0.21
SKA3-206ENST00000475251 USP17L8P0C7I0 530 aa16.33■□□□□ 0.2
SKA3-206ENST00000475251 SCARF1Q14162 830 aa16.33■□□□□ 0.2
SKA3-206ENST00000475251 WDR43Q15061 677 aaKnown RBP eCLIP16.33■□□□□ 0.2
SKA3-206ENST00000475251 PKN2Q16513 984 aaKnown RBP16.33■□□□□ 0.2
SKA3-206ENST00000475251 RASAL3Q86YV0 1011 aa16.33■□□□□ 0.2
SKA3-206ENST00000475251 CCDC146Q8IYE0 955 aa16.33■□□□□ 0.2
SKA3-206ENST00000475251 SCN9AQ15858 1988 aa16.33■□□□□ 0.2
SKA3-206ENST00000475251 ZBTB22O15209 634 aa16.32■□□□□ 0.2
SKA3-206ENST00000475251 XDHP47989 1333 aa16.32■□□□□ 0.2
SKA3-206ENST00000475251 DUSP27Q5VZP5 1158 aa16.32■□□□□ 0.2
SKA3-206ENST00000475251 PODNQ7Z5L7 613 aa16.32■□□□□ 0.2
SKA3-206ENST00000475251 CHMP4AQ9BY43 222 aa16.32■□□□□ 0.2
SKA3-206ENST00000475251 TRIM35Q9UPQ4 493 aa16.32■□□□□ 0.2
SKA3-206ENST00000475251 PDE8AO60658 829 aa16.31■□□□□ 0.2
SKA3-206ENST00000475251 CCDC191Q8NCU4 936 aa16.31■□□□□ 0.2
SKA3-206ENST00000475251 MYOZ2Q9NPC6 264 aa16.31■□□□□ 0.2
SKA3-206ENST00000475251 SEC31BQ9NQW1 1179 aa16.31■□□□□ 0.2
SKA3-206ENST00000475251 HDAC9Q9UKV0 1011 aa16.31■□□□□ 0.2
SKA3-206ENST00000475251 PSME4Q14997 1843 aa16.31■□□□□ 0.2
SKA3-206ENST00000475251 COL4A1P02462 1669 aa16.3■□□□□ 0.2
SKA3-206ENST00000475251 ASTN2O75129 1339 aaPredicted RBP16.3■□□□□ 0.2
SKA3-206ENST00000475251 MYBBP1AQ9BQG0 1328 aaKnown RBP16.3■□□□□ 0.2
SKA3-206ENST00000475251 USP17L3A6NCW0 530 aa16.3■□□□□ 0.2
SKA3-206ENST00000475251 USP17L4A6NCW7 530 aa16.3■□□□□ 0.2
SKA3-206ENST00000475251 MYCNP04198 464 aaPredicted RBP16.3■□□□□ 0.2
SKA3-206ENST00000475251 PCCAP05165 728 aaPredicted RBP16.3■□□□□ 0.2
SKA3-206ENST00000475251 ATP2B4P23634 1241 aa16.3■□□□□ 0.2
SKA3-206ENST00000475251 DSG3P32926 999 aa16.3■□□□□ 0.2
SKA3-206ENST00000475251 PRPF38BQ5VTL8 546 aaKnown RBP16.3■□□□□ 0.2
SKA3-206ENST00000475251 USP17L1Q7RTZ2 530 aa16.3■□□□□ 0.2
SKA3-206ENST00000475251 ANKRD18AQ8IVF6 992 aa16.3■□□□□ 0.2
SKA3-206ENST00000475251 FOXD4L1Q9NU39 408 aa16.3■□□□□ 0.2
SKA3-206ENST00000475251 TNRC18O15417 2968 aaPredicted RBP16.29■□□□□ 0.2
SKA3-206ENST00000475251 DDX58O95786 925 aaKnown RBP16.29■□□□□ 0.2
SKA3-206ENST00000475251 NF2P35240 595 aa16.29■□□□□ 0.2
SKA3-206ENST00000475251 MMP14P50281 582 aa16.29■□□□□ 0.2
SKA3-206ENST00000475251 CALD1Q05682 793 aaKnown RBP16.29■□□□□ 0.2
SKA3-206ENST00000475251 OGFOD1Q8N543 542 aa16.29■□□□□ 0.2
SKA3-206ENST00000475251 CDC5LQ99459 802 aaKnown RBP16.29■□□□□ 0.2
SKA3-206ENST00000475251 MYD88Q99836 296 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms