RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 UFL1O94874 794 aa26.03■■□□□ 1.76
PDLIM4-206ENST00000474421 CWF19L2Q2TBE0 894 aaKnown RBP26.03■■□□□ 1.76
PDLIM4-206ENST00000474421 DEFB115Q30KQ5 88 aa26.03■■□□□ 1.76
PDLIM4-206ENST00000474421 CCDC85AQ96PX6 553 aaPredicted RBP26.03■■□□□ 1.76
PDLIM4-206ENST00000474421 ABT1Q9ULW3 272 aaKnown RBP26.03■■□□□ 1.76
PDLIM4-206ENST00000474421 G3V3G9 751 aa26.02■■□□□ 1.76
PDLIM4-206ENST00000474421 PSMD14O00487 310 aa26.02■■□□□ 1.76
PDLIM4-206ENST00000474421 VAMP4O75379 141 aa26.02■■□□□ 1.76
PDLIM4-206ENST00000474421 RPS12P25398 132 aaKnown RBP26.02■■□□□ 1.76
PDLIM4-206ENST00000474421 VEGFBP49765 207 aa26.02■■□□□ 1.76
PDLIM4-206ENST00000474421 FKBP5Q13451 457 aaPredicted RBP26.02■■□□□ 1.76
PDLIM4-206ENST00000474421 DCAF8Q5TAQ9 597 aa26.02■■□□□ 1.76
PDLIM4-206ENST00000474421 PGAP2Q9UHJ9 254 aa26.02■■□□□ 1.76
PDLIM4-206ENST00000474421 XDHP47989 1333 aa26.01■■□□□ 1.75
PDLIM4-206ENST00000474421 DOK7Q18PE1 504 aa26.01■■□□□ 1.75
PDLIM4-206ENST00000474421 MICALL2Q8IY33 904 aa26.01■■□□□ 1.75
PDLIM4-206ENST00000474421 FAM9BQ8IZU0 186 aa26.01■■□□□ 1.75
PDLIM4-206ENST00000474421 RTL9Q8NET4 1388 aa26.01■■□□□ 1.75
PDLIM4-206ENST00000474421 TTLL11Q8NHH1 800 aa26.01■■□□□ 1.75
PDLIM4-206ENST00000474421 MYH16Q9H6N6 1097 aa26.01■■□□□ 1.75
PDLIM4-206ENST00000474421 H7C1W4 665 aa26■■□□□ 1.75
PDLIM4-206ENST00000474421 EXOSC9Q06265 439 aaKnown RBP26■■□□□ 1.75
PDLIM4-206ENST00000474421 COL13A1Q5TAT6 717 aaPredicted RBP26■■□□□ 1.75
PDLIM4-206ENST00000474421 DNAAF4Q8WXU2 420 aa26■■□□□ 1.75
PDLIM4-206ENST00000474421 GCKRQ14397 625 aa25.99■■□□□ 1.75
PDLIM4-206ENST00000474421 UBE3BQ7Z3V4 1068 aa25.99■■□□□ 1.75
PDLIM4-206ENST00000474421 ZBTB12Q9Y330 459 aaPredicted RBP25.99■■□□□ 1.75
PDLIM4-206ENST00000474421 TRAF5O00463 557 aa25.98■■□□□ 1.75
PDLIM4-206ENST00000474421 ATP2B4P23634 1241 aa25.98■■□□□ 1.75
PDLIM4-206ENST00000474421 LINS1Q8NG48 757 aa25.98■■□□□ 1.75
PDLIM4-206ENST00000474421 GPR101Q96P66 508 aaPredicted RBP25.98■■□□□ 1.75
PDLIM4-206ENST00000474421 HIRAP54198 1017 aaPredicted RBP25.97■■□□□ 1.75
PDLIM4-206ENST00000474421 TRPM4Q8TD43 1214 aa25.97■■□□□ 1.75
PDLIM4-206ENST00000474421 AIDAQ96BJ3 306 aa25.97■■□□□ 1.75
PDLIM4-206ENST00000474421 PLA2G12BQ9BX93 195 aa25.97■■□□□ 1.75
PDLIM4-206ENST00000474421 GREM2Q9H772 168 aa25.97■■□□□ 1.75
PDLIM4-206ENST00000474421 BSDC1Q9NW68 430 aaPredicted RBP25.97■■□□□ 1.75
PDLIM4-206ENST00000474421 CDC37L1Q7L3B6 337 aa25.96■■□□□ 1.75
PDLIM4-206ENST00000474421 WDR33Q9C0J8 1336 aaKnown RBP25.95■■□□□ 1.75
PDLIM4-206ENST00000474421 VIL1P09327 827 aaKnown RBP25.95■■□□□ 1.74
PDLIM4-206ENST00000474421 ECE1P42892 770 aa25.95■■□□□ 1.74
PDLIM4-206ENST00000474421 FMR1Q06787 632 aaKnown RBP eCLIP25.95■■□□□ 1.74
PDLIM4-206ENST00000474421 CST9Q5W186 159 aa25.95■■□□□ 1.74
PDLIM4-206ENST00000474421 SCN9AQ15858 1988 aa25.95■■□□□ 1.74
PDLIM4-206ENST00000474421 IGHMBP2P38935 993 aaKnown RBP25.94■■□□□ 1.74
PDLIM4-206ENST00000474421 GLIS2Q9BZE0 524 aaPredicted RBP25.94■■□□□ 1.74
PDLIM4-206ENST00000474421 KCNQ5Q9NR82 932 aa25.94■■□□□ 1.74
PDLIM4-206ENST00000474421 SPEF2Q9C093 1822 aa25.93■■□□□ 1.74
PDLIM4-206ENST00000474421 SHTN1A0MZ66 631 aa25.93■■□□□ 1.74
PDLIM4-206ENST00000474421 CELF2O95319 508 aaKnown RBP25.93■■□□□ 1.74
PDLIM4-206ENST00000474421 SPINK5Q9NQ38 1064 aaPredicted RBP25.93■■□□□ 1.74
PDLIM4-206ENST00000474421 MINPP1Q9UNW1 487 aa25.93■■□□□ 1.74
PDLIM4-206ENST00000474421 TLL2Q9Y6L7 1015 aa25.93■■□□□ 1.74
PDLIM4-206ENST00000474421 SAMD7Q7Z3H4 446 aa25.92■■□□□ 1.74
PDLIM4-206ENST00000474421 TNS4Q8IZW8 715 aa25.92■■□□□ 1.74
PDLIM4-206ENST00000474421 PSME4Q14997 1843 aa25.92■■□□□ 1.74
PDLIM4-206ENST00000474421 ZNF609O15014 1411 aa25.91■■□□□ 1.74
PDLIM4-206ENST00000474421 CASP7P55210 303 aa25.91■■□□□ 1.74
PDLIM4-206ENST00000474421 MAP2K1Q02750 393 aaPredicted RBP25.91■■□□□ 1.74
PDLIM4-206ENST00000474421 TBC1D10BQ4KMP7 808 aaPredicted RBP25.91■■□□□ 1.74
PDLIM4-206ENST00000474421 PAXIP1Q6ZW49 1069 aaPredicted RBP25.91■■□□□ 1.74
PDLIM4-206ENST00000474421 PODNQ7Z5L7 613 aa25.91■■□□□ 1.74
PDLIM4-206ENST00000474421 AGBL3Q8NEM8 1001 aa25.91■■□□□ 1.74
PDLIM4-206ENST00000474421 WBP1LQ9NX94 342 aa25.91■■□□□ 1.74
PDLIM4-206ENST00000474421 ITGA6P23229 1130 aa25.9■■□□□ 1.74
PDLIM4-206ENST00000474421 CTCFP49711 727 aaPredicted RBP25.9■■□□□ 1.74
PDLIM4-206ENST00000474421 CAPNS2Q96L46 248 aa25.9■■□□□ 1.74
PDLIM4-206ENST00000474421 MED23Q9ULK4 1368 aa25.9■■□□□ 1.74
PDLIM4-206ENST00000474421 FOXN1O15353 648 aa25.89■■□□□ 1.74
PDLIM4-206ENST00000474421 CSF1RP07333 972 aa25.89■■□□□ 1.74
PDLIM4-206ENST00000474421 RSBN1LQ6PCB5 846 aaPredicted RBP25.89■■□□□ 1.74
PDLIM4-206ENST00000474421 MPHOSPH8Q99549 860 aa25.89■■□□□ 1.74
PDLIM4-206ENST00000474421 LEMD3Q9Y2U8 911 aa25.89■■□□□ 1.74
PDLIM4-206ENST00000474421 CCT4P50991 539 aaKnown RBP25.88■■□□□ 1.73
PDLIM4-206ENST00000474421 KIF4BQ2VIQ3 1234 aa25.88■■□□□ 1.73
PDLIM4-206ENST00000474421 FAM161AQ3B820 660 aa25.88■■□□□ 1.73
PDLIM4-206ENST00000474421 SAPCD2Q86UD0 394 aa25.88■■□□□ 1.73
PDLIM4-206ENST00000474421 DCPSQ96C86 337 aaKnown RBP25.88■■□□□ 1.73
PDLIM4-206ENST00000474421 HHIPL1Q96JK4 782 aa25.88■■□□□ 1.73
PDLIM4-206ENST00000474421 ANKRD2Q9GZV1 360 aa25.88■■□□□ 1.73
PDLIM4-206ENST00000474421 POLR2AP24928 1970 aaKnown RBP25.87■■□□□ 1.73
PDLIM4-206ENST00000474421 USP17L3A6NCW0 530 aa25.87■■□□□ 1.73
PDLIM4-206ENST00000474421 USP17L4A6NCW7 530 aa25.87■■□□□ 1.73
PDLIM4-206ENST00000474421 BEND3Q5T5X7 828 aa25.87■■□□□ 1.73
PDLIM4-206ENST00000474421 RBM26Q5T8P6 1007 aaKnown RBP25.87■■□□□ 1.73
PDLIM4-206ENST00000474421 USP17L1Q7RTZ2 530 aa25.87■■□□□ 1.73
PDLIM4-206ENST00000474421 USP48Q86UV5 1035 aa25.87■■□□□ 1.73
PDLIM4-206ENST00000474421 ZNF408Q9H9D4 720 aa25.87■■□□□ 1.73
PDLIM4-206ENST00000474421 PRDM10Q9NQV6 1147 aa25.87■■□□□ 1.73
PDLIM4-206ENST00000474421 F6X3S4 739 aa25.86■■□□□ 1.73
PDLIM4-206ENST00000474421 EGFRP00533 1210 aa25.86■■□□□ 1.73
PDLIM4-206ENST00000474421 CYP4F22Q6NT55 531 aa25.86■■□□□ 1.73
PDLIM4-206ENST00000474421 KRT26Q7Z3Y9 468 aa25.86■■□□□ 1.73
PDLIM4-206ENST00000474421 THSD7BQ9C0I4 1608 aa25.85■■□□□ 1.73
PDLIM4-206ENST00000474421 ANKRD18BA2A2Z9 1011 aa25.85■■□□□ 1.73
PDLIM4-206ENST00000474421 ZNF280AP59817 542 aaPredicted RBP25.85■■□□□ 1.73
PDLIM4-206ENST00000474421 ZNF521Q96K83 1311 aa25.85■■□□□ 1.73
PDLIM4-206ENST00000474421 BEGAINQ9BUH8 593 aa25.84■■□□□ 1.73
PDLIM4-206ENST00000474421 COA1Q9GZY4 146 aa25.84■■□□□ 1.73
PDLIM4-206ENST00000474421 USP17L8P0C7I0 530 aa25.83■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms