RNA–Protein interactions for RNA: ENST00000470240.5

SMC4-212, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-212ENST00000470240 G3BP1Q13283 466 aaKnown RBP eCLIP9.65□□□□□ -0.861e-39■■■■■ 140
SMC4-212ENST00000470240 KLHL40Q2TBA0 621 aa9.65□□□□□ -0.86
SMC4-212ENST00000470240 LARP1Q6PKG0 1096 aaKnown RBP9.65□□□□□ -0.86
SMC4-212ENST00000470240 ZC3H15Q8WU90 426 aaKnown RBP9.65□□□□□ -0.86
SMC4-212ENST00000470240 TRIM44Q96DX7 344 aaPredicted RBP9.65□□□□□ -0.86
SMC4-212ENST00000470240 INTS4Q96HW7 963 aaKnown RBP9.65□□□□□ -0.86
SMC4-212ENST00000470240 GRPEL1Q9HAV7 217 aa9.65□□□□□ -0.86
SMC4-212ENST00000470240 IL1RAPL2Q9NP60 686 aa9.65□□□□□ -0.86
SMC4-212ENST00000470240 DDX21Q9NR30 783 aaKnown RBP eCLIP9.65□□□□□ -0.861e-26■■■■■ 198.7
SMC4-212ENST00000470240 NLRP2Q9NX02 1062 aa9.65□□□□□ -0.86
SMC4-212ENST00000470240 SCN11AQ9UI33 1791 aa9.65□□□□□ -0.87
SMC4-212ENST00000470240 PXDNQ92626 1479 aa9.65□□□□□ -0.87
SMC4-212ENST00000470240 ADCY9O60503 1353 aa9.64□□□□□ -0.87
SMC4-212ENST00000470240 USP42Q9H9J4 1324 aaKnown RBP9.64□□□□□ -0.87
SMC4-212ENST00000470240 MBD3O95983 291 aa9.64□□□□□ -0.87
SMC4-212ENST00000470240 MCTP1Q6DN14 999 aa9.64□□□□□ -0.87
SMC4-212ENST00000470240 RIC3Q7Z5B4 369 aa9.64□□□□□ -0.87
SMC4-212ENST00000470240 NUTM1Q86Y26 1132 aa9.64□□□□□ -0.87
SMC4-212ENST00000470240 IFNL2Q8IZJ0 200 aa9.64□□□□□ -0.87
SMC4-212ENST00000470240 SYAP1Q96A49 352 aaPredicted RBP9.64□□□□□ -0.87
SMC4-212ENST00000470240 ARXQ96QS3 562 aa9.64□□□□□ -0.87
SMC4-212ENST00000470240 RAD50Q92878 1312 aa9.63□□□□□ -0.87
SMC4-212ENST00000470240 GRM8O00222 908 aa9.63□□□□□ -0.87
SMC4-212ENST00000470240 ACTN4O43707 911 aaKnown RBP9.63□□□□□ -0.87
SMC4-212ENST00000470240 HSPA4P34932 840 aa9.63□□□□□ -0.87
SMC4-212ENST00000470240 TSHZ3Q63HK5 1081 aa9.63□□□□□ -0.87
SMC4-212ENST00000470240 IL17RAQ96F46 866 aa9.63□□□□□ -0.87
SMC4-212ENST00000470240 ECHDC1Q9NTX5 307 aa9.63□□□□□ -0.87
SMC4-212ENST00000470240 TNS3Q68CZ2 1445 aa9.63□□□□□ -0.87
SMC4-212ENST00000470240 RGPD5Q99666 1765 aa9.63□□□□□ -0.87
SMC4-212ENST00000470240 HEG1Q9ULI3 1381 aa9.63□□□□□ -0.87
SMC4-212ENST00000470240 KCNQ3O43525 872 aa9.62□□□□□ -0.87
SMC4-212ENST00000470240 NBPF7P0C2Y1 421 aaPredicted RBP9.62□□□□□ -0.87
SMC4-212ENST00000470240 PDIA4P13667 645 aaKnown RBP9.62□□□□□ -0.87
SMC4-212ENST00000470240 ZC3H6P61129 1189 aaKnown RBP9.62□□□□□ -0.87
SMC4-212ENST00000470240 MDM2Q00987 491 aaPredicted RBP9.62□□□□□ -0.87
SMC4-212ENST00000470240 BLOC1S3Q6QNY0 202 aa9.62□□□□□ -0.87
SMC4-212ENST00000470240 ZNF516Q92618 1163 aa9.62□□□□□ -0.87
SMC4-212ENST00000470240 EVI5LQ96CN4 794 aa9.62□□□□□ -0.87
SMC4-212ENST00000470240 TMX3Q96JJ7 454 aa9.62□□□□□ -0.87
SMC4-212ENST00000470240 DCAF5Q96JK2 942 aa9.62□□□□□ -0.87
SMC4-212ENST00000470240 SLC52A2Q9HAB3 445 aa9.62□□□□□ -0.87
SMC4-212ENST00000470240 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.62□□□□□ -0.87
SMC4-212ENST00000470240 ATP6V1DQ9Y5K8 247 aa9.62□□□□□ -0.87
SMC4-212ENST00000470240 UTYO14607 1347 aa9.61□□□□□ -0.87
SMC4-212ENST00000470240 WDR33Q9C0J8 1336 aaKnown RBP9.61□□□□□ -0.87
SMC4-212ENST00000470240 MRC1P22897 1456 aa9.61□□□□□ -0.87
SMC4-212ENST00000470240 SGSM2O43147 1006 aa9.61□□□□□ -0.87
SMC4-212ENST00000470240 ZMYND10O75800 440 aa9.61□□□□□ -0.87
SMC4-212ENST00000470240 CYP2E1P05181 493 aaPredicted RBP9.61□□□□□ -0.87
SMC4-212ENST00000470240 SNRPA1P09661 255 aaKnown RBP9.61□□□□□ -0.87
SMC4-212ENST00000470240 XRCC6P12956 609 aaKnown RBP eCLIP9.61□□□□□ -0.87
SMC4-212ENST00000470240 ZKSCAN1P17029 563 aaPredicted RBP9.61□□□□□ -0.87
SMC4-212ENST00000470240 CUL4AQ13619 759 aa9.61□□□□□ -0.87
SMC4-212ENST00000470240 CSPP1Q1MSJ5 1256 aa9.61□□□□□ -0.87
SMC4-212ENST00000470240 RNF20Q5VTR2 975 aa9.61□□□□□ -0.87
SMC4-212ENST00000470240 ZNF790Q6PG37 636 aa9.61□□□□□ -0.87
SMC4-212ENST00000470240 BARGINQ6ZT62 677 aa9.61□□□□□ -0.87
SMC4-212ENST00000470240 AACSQ86V21 672 aa9.61□□□□□ -0.87
SMC4-212ENST00000470240 PI4K2BQ8TCG2 481 aa9.61□□□□□ -0.87
SMC4-212ENST00000470240 FMNL2Q96PY5 1086 aa9.61□□□□□ -0.87
SMC4-212ENST00000470240 PARP4Q9UKK3 1724 aaKnown RBP9.61□□□□□ -0.87
SMC4-212ENST00000470240 CRYBG1Q9Y4K1 1723 aa9.61□□□□□ -0.87
SMC4-212ENST00000470240 TMEM94Q12767 1356 aa9.61□□□□□ -0.87
SMC4-212ENST00000470240 LAMB4A4D0S4 1761 aa9.6□□□□□ -0.87
SMC4-212ENST00000470240 ERBB4Q15303 1308 aa9.6□□□□□ -0.87
SMC4-212ENST00000470240 PKD1L3Q7Z443 1732 aa9.6□□□□□ -0.87
SMC4-212ENST00000470240 ANXA1P04083 346 aa9.6□□□□□ -0.87
SMC4-212ENST00000470240 PHKG2P15735 406 aa9.6□□□□□ -0.87
SMC4-212ENST00000470240 KCNJ4P48050 445 aa9.6□□□□□ -0.87
SMC4-212ENST00000470240 CCDC173Q0VFZ6 552 aa9.6□□□□□ -0.87
SMC4-212ENST00000470240 AIMP1Q12904 312 aaKnown RBP9.6□□□□□ -0.87
SMC4-212ENST00000470240 ZSCAN31Q96LW9 406 aaPredicted RBP9.6□□□□□ -0.87
SMC4-212ENST00000470240 ZPR1O75312 459 aa9.59□□□□□ -0.87
SMC4-212ENST00000470240 PSMA5P28066 241 aa9.59□□□□□ -0.87
SMC4-212ENST00000470240 NASPP49321 788 aaPredicted RBP9.59□□□□□ -0.87
SMC4-212ENST00000470240 CABP4P57796 275 aa9.59□□□□□ -0.87
SMC4-212ENST00000470240 ZGPATQ8N5A5 531 aaKnown RBP9.59□□□□□ -0.87
SMC4-212ENST00000470240 METTL22Q9BUU2 404 aaPredicted RBP9.59□□□□□ -0.87
SMC4-212ENST00000470240 SH2B1Q9NRF2 756 aaPredicted RBP9.59□□□□□ -0.87
SMC4-212ENST00000470240 CPDO75976 1380 aa9.59□□□□□ -0.87
SMC4-212ENST00000470240 AFDNP55196 1824 aaKnown RBP9.59□□□□□ -0.88
SMC4-212ENST00000470240 C5P01031 1676 aa9.58□□□□□ -0.88
SMC4-212ENST00000470240 NR1I2O75469 434 aa9.58□□□□□ -0.88
SMC4-212ENST00000470240 MAP4K4O95819 1239 aaPredicted RBP9.58□□□□□ -0.88
SMC4-212ENST00000470240 CLCN1P35523 988 aa9.58□□□□□ -0.88
SMC4-212ENST00000470240 ZNF445P59923 1031 aa9.58□□□□□ -0.88
SMC4-212ENST00000470240 ANKRD1Q15327 319 aa9.58□□□□□ -0.88
SMC4-212ENST00000470240 CWF19L2Q2TBE0 894 aaKnown RBP9.58□□□□□ -0.88
SMC4-212ENST00000470240 CAVIN1Q6NZI2 390 aaKnown RBP9.58□□□□□ -0.88
SMC4-212ENST00000470240 CWC27Q6UX04 472 aaKnown RBP9.58□□□□□ -0.88
SMC4-212ENST00000470240 NOL8Q76FK4 1167 aaKnown RBP9.58□□□□□ -0.88
SMC4-212ENST00000470240 UNC5CLQ8IV45 518 aa9.58□□□□□ -0.88
SMC4-212ENST00000470240 FSD1Q9BTV5 496 aa9.58□□□□□ -0.88
SMC4-212ENST00000470240 LIMCH1Q9UPQ0 1083 aa9.58□□□□□ -0.88
SMC4-212ENST00000470240 COL18A1P39060 1754 aa9.58□□□□□ -0.88
SMC4-212ENST00000470240 PCDH11XQ9BZA7 1347 aa9.57□□□□□ -0.88
SMC4-212ENST00000470240 PCDH11YQ9BZA8 1340 aa9.57□□□□□ -0.88
SMC4-212ENST00000470240 KDM6AO15550 1401 aaPredicted RBP9.57□□□□□ -0.88
SMC4-212ENST00000470240 NEURL1BA8MQ27 555 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms