RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 NUDT16Q96DE0 195 aaKnown RBP9.41□□□□□ -0.9
PTCD3-208ENST00000469585 ABHD17AQ96GS6 310 aa9.41□□□□□ -0.9
PTCD3-208ENST00000469585 KCNMB2Q9Y691 235 aa9.41□□□□□ -0.9
PTCD3-208ENST00000469585 LRRC9Q6ZRR7 1453 aa9.4□□□□□ -0.9
PTCD3-208ENST00000469585 POGZQ7Z3K3 1410 aa9.4□□□□□ -0.9
PTCD3-208ENST00000469585 H3BM21 787 aa9.4□□□□□ -0.9
PTCD3-208ENST00000469585 IGHA2P01877 340 aa9.4□□□□□ -0.9
PTCD3-208ENST00000469585 EPB42P16452 691 aa9.4□□□□□ -0.9
PTCD3-208ENST00000469585 MAPK1P28482 360 aa9.4□□□□□ -0.9
PTCD3-208ENST00000469585 SFSWAPQ12872 951 aaKnown RBP9.4□□□□□ -0.9
PTCD3-208ENST00000469585 LAMC2Q13753 1193 aa9.4□□□□□ -0.9
PTCD3-208ENST00000469585 GJD3Q8N144 294 aa9.4□□□□□ -0.9
PTCD3-208ENST00000469585 CITED4Q96RK1 184 aa9.4□□□□□ -0.9
PTCD3-208ENST00000469585 CFHR5Q9BXR6 569 aa9.4□□□□□ -0.9
PTCD3-208ENST00000469585 STRN4Q9NRL3 753 aa9.4□□□□□ -0.9
PTCD3-208ENST00000469585 ATXN7L1Q9ULK2 861 aaPredicted RBP9.4□□□□□ -0.9
PTCD3-208ENST00000469585 MAGI2Q86UL8 1455 aa9.4□□□□□ -0.91
PTCD3-208ENST00000469585 GPR25O00155 361 aa9.39□□□□□ -0.91
PTCD3-208ENST00000469585 TSPY4P0CV99 314 aa9.39□□□□□ -0.91
PTCD3-208ENST00000469585 TSPY10P0CW01 314 aa9.39□□□□□ -0.91
PTCD3-208ENST00000469585 TRIP4Q15650 581 aaPredicted RBP9.39□□□□□ -0.91
PTCD3-208ENST00000469585 ASB16Q96NS5 453 aa9.39□□□□□ -0.91
PTCD3-208ENST00000469585 FAM129BQ96TA1 746 aa9.39□□□□□ -0.91
PTCD3-208ENST00000469585 GGNBP2Q9H3C7 697 aa9.39□□□□□ -0.91
PTCD3-208ENST00000469585 C11orf16Q9NQ32 467 aa9.39□□□□□ -0.91
PTCD3-208ENST00000469585 KCNH4Q9UQ05 1017 aa9.39□□□□□ -0.91
PTCD3-208ENST00000469585 USP5P45974 858 aa9.38□□□□□ -0.91
PTCD3-208ENST00000469585 CMTR1Q8N1G2 835 aaKnown RBP9.38□□□□□ -0.91
PTCD3-208ENST00000469585 NCOA2Q15596 1464 aa9.38□□□□□ -0.91
PTCD3-208ENST00000469585 SPAG9O60271 1321 aaKnown RBP9.37□□□□□ -0.91
PTCD3-208ENST00000469585 TERTO14746 1132 aaKnown RBP9.37□□□□□ -0.91
PTCD3-208ENST00000469585 EGFRP00533 1210 aa9.37□□□□□ -0.91
PTCD3-208ENST00000469585 VSIG8P0DPA2 414 aa9.37□□□□□ -0.91
PTCD3-208ENST00000469585 PCSK2P16519 638 aa9.37□□□□□ -0.91
PTCD3-208ENST00000469585 GRIN2CQ14957 1233 aa9.37□□□□□ -0.91
PTCD3-208ENST00000469585 FOXR1Q6PIV2 292 aa9.37□□□□□ -0.91
PTCD3-208ENST00000469585 TMC7Q7Z402 723 aa9.37□□□□□ -0.91
PTCD3-208ENST00000469585 TRERF1Q96PN7 1200 aa9.37□□□□□ -0.91
PTCD3-208ENST00000469585 MARK1Q9P0L2 795 aa9.37□□□□□ -0.91
PTCD3-208ENST00000469585 PHF24Q9UPV7 400 aa9.37□□□□□ -0.91
PTCD3-208ENST00000469585 CDC42BPAQ5VT25 1732 aa9.36□□□□□ -0.91
PTCD3-208ENST00000469585 ZFYVE16Q7Z3T8 1539 aa9.36□□□□□ -0.91
PTCD3-208ENST00000469585 GPATCH8Q9UKJ3 1502 aaKnown RBP9.36□□□□□ -0.91
PTCD3-208ENST00000469585 RPLP1P05386 114 aaKnown RBP9.36□□□□□ -0.91
PTCD3-208ENST00000469585 CD33P20138 364 aa9.36□□□□□ -0.91
PTCD3-208ENST00000469585 FGFR3P22607 806 aa9.36□□□□□ -0.91
PTCD3-208ENST00000469585 FAM182BQ5T319 152 aa9.36□□□□□ -0.91
PTCD3-208ENST00000469585 GPR161Q8N6U8 529 aaKnown RBP9.36□□□□□ -0.91
PTCD3-208ENST00000469585 RGS22Q8NE09 1264 aa9.36□□□□□ -0.91
PTCD3-208ENST00000469585 KIAA1107Q9UPP5 1409 aa9.36□□□□□ -0.91
PTCD3-208ENST00000469585 CDC42BPBQ9Y5S2 1711 aa9.36□□□□□ -0.91
PTCD3-208ENST00000469585 A6NHS1 94 aa9.35□□□□□ -0.91
PTCD3-208ENST00000469585 XYLBO75191 536 aa9.35□□□□□ -0.91
PTCD3-208ENST00000469585 PDE3BQ13370 1112 aa9.35□□□□□ -0.91
PTCD3-208ENST00000469585 GAS6Q14393 721 aa9.35□□□□□ -0.91
PTCD3-208ENST00000469585 ZSCAN29Q8IWY8 852 aaPredicted RBP9.35□□□□□ -0.91
PTCD3-208ENST00000469585 ABCC1P33527 1531 aa9.35□□□□□ -0.91
PTCD3-208ENST00000469585 HECW2Q9P2P5 1572 aa9.34□□□□□ -0.91
PTCD3-208ENST00000469585 MYOM3Q5VTT5 1437 aa9.34□□□□□ -0.91
PTCD3-208ENST00000469585 MIA2Q96PC5 1412 aa9.34□□□□□ -0.91
PTCD3-208ENST00000469585 ANKRD33BA6NCL7 494 aa9.34□□□□□ -0.91
PTCD3-208ENST00000469585 UBAP1LF5GYI3 381 aa9.34□□□□□ -0.91
PTCD3-208ENST00000469585 GPR182O15218 404 aa9.34□□□□□ -0.91
PTCD3-208ENST00000469585 HNRNPMP52272 730 aaKnown RBP eCLIP9.34□□□□□ -0.91
PTCD3-208ENST00000469585 CTBSQ01459 385 aa9.34□□□□□ -0.91
PTCD3-208ENST00000469585 EHHADHQ08426 723 aa9.34□□□□□ -0.91
PTCD3-208ENST00000469585 XKR5Q6UX68 686 aa9.34□□□□□ -0.91
PTCD3-208ENST00000469585 DMRTB1Q96MA1 342 aa9.34□□□□□ -0.91
PTCD3-208ENST00000469585 GSX2Q9BZM3 304 aa9.34□□□□□ -0.91
PTCD3-208ENST00000469585 FNDC3AQ9Y2H6 1198 aaKnown RBP9.34□□□□□ -0.91
PTCD3-208ENST00000469585 ZMYM4Q5VZL5 1548 aa9.34□□□□□ -0.91
PTCD3-208ENST00000469585 ARHGEF40Q8TER5 1519 aa9.34□□□□□ -0.91
PTCD3-208ENST00000469585 SYCP2Q9BX26 1530 aa9.34□□□□□ -0.91
PTCD3-208ENST00000469585 COL17A1Q9UMD9 1497 aaPredicted RBP9.34□□□□□ -0.91
PTCD3-208ENST00000469585 RICTORQ6R327 1708 aa9.34□□□□□ -0.92
PTCD3-208ENST00000469585 TREHO43280 583 aa9.33□□□□□ -0.92
PTCD3-208ENST00000469585 ERCC3P19447 782 aa9.33□□□□□ -0.92
PTCD3-208ENST00000469585 CCINQ13939 588 aa9.33□□□□□ -0.92
PTCD3-208ENST00000469585 DSC3Q14574 896 aa9.33□□□□□ -0.92
PTCD3-208ENST00000469585 C8orf34Q49A92 452 aa9.33□□□□□ -0.92
PTCD3-208ENST00000469585 PDE12Q6L8Q7 609 aaKnown RBP9.33□□□□□ -0.92
PTCD3-208ENST00000469585 NPAS4Q8IUM7 802 aa9.33□□□□□ -0.92
PTCD3-208ENST00000469585 AFAP1Q8N556 730 aa9.33□□□□□ -0.92
PTCD3-208ENST00000469585 ALKBH8Q96BT7 664 aaKnown RBP9.33□□□□□ -0.92
PTCD3-208ENST00000469585 SLC30A3Q99726 388 aa9.33□□□□□ -0.92
PTCD3-208ENST00000469585 ERBB4Q15303 1308 aa9.32□□□□□ -0.92
PTCD3-208ENST00000469585 C9orf84Q5VXU9 1444 aa9.32□□□□□ -0.92
PTCD3-208ENST00000469585 C2CD2LO14523 706 aa9.32□□□□□ -0.92
PTCD3-208ENST00000469585 SPEM2Q0P670 501 aa9.32□□□□□ -0.92
PTCD3-208ENST00000469585 NFX1Q12986 1120 aaKnown RBP9.32□□□□□ -0.92
PTCD3-208ENST00000469585 FAM50AQ14320 339 aaKnown RBP9.32□□□□□ -0.92
PTCD3-208ENST00000469585 TMC1Q8TDI8 760 aa9.32□□□□□ -0.92
PTCD3-208ENST00000469585 ATP10AO60312 1499 aa9.32□□□□□ -0.92
PTCD3-208ENST00000469585 CAMSAP2Q08AD1 1489 aa9.32□□□□□ -0.92
PTCD3-208ENST00000469585 NLRP13Q86W25 1043 aa9.31□□□□□ -0.92
PTCD3-208ENST00000469585 CCDC141Q6ZP82 1450 aa9.31□□□□□ -0.92
PTCD3-208ENST00000469585 SAMD9LQ8IVG5 1584 aa9.31□□□□□ -0.92
PTCD3-208ENST00000469585 MLH3Q9UHC1 1453 aa9.3□□□□□ -0.92
PTCD3-208ENST00000469585 SASH3O75995 380 aa9.3□□□□□ -0.92
PTCD3-208ENST00000469585 TARSP26639 723 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms