RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 RTL5Q5HYW3 569 aaPredicted RBP17.41■□□□□ 0.38
CHD3-207ENST00000466233 CDC5LQ99459 802 aaKnown RBP17.41■□□□□ 0.38
CHD3-207ENST00000466233 GGA1Q9UJY5 639 aa17.41■□□□□ 0.38
CHD3-207ENST00000466233 HSPA8P11142 646 aaKnown RBP17.4■□□□□ 0.38
CHD3-207ENST00000466233 MMP14P50281 582 aa17.4■□□□□ 0.38
CHD3-207ENST00000466233 ANKRD18AQ8IVF6 992 aa17.4■□□□□ 0.38
CHD3-207ENST00000466233 AGBL3Q8NEM8 1001 aa17.4■□□□□ 0.38
CHD3-207ENST00000466233 TRPM4Q8TD43 1214 aa17.4■□□□□ 0.38
CHD3-207ENST00000466233 GLIS2Q9BZE0 524 aaPredicted RBP17.4■□□□□ 0.38
CHD3-207ENST00000466233 DBNDD1Q9H9R9 158 aa17.4■□□□□ 0.38
CHD3-207ENST00000466233 ANKIB1Q9P2G1 1089 aa17.4■□□□□ 0.38
CHD3-207ENST00000466233 MAP3K2Q9Y2U5 619 aa17.4■□□□□ 0.38
CHD3-207ENST00000466233 XDHP47989 1333 aa17.4■□□□□ 0.38
CHD3-207ENST00000466233 PI4KAP2A4QPH2 592 aa17.39■□□□□ 0.37
CHD3-207ENST00000466233 ATP2B4P23634 1241 aa17.39■□□□□ 0.37
CHD3-207ENST00000466233 LBX1P52954 281 aa17.39■□□□□ 0.37
CHD3-207ENST00000466233 BRPF1P55201 1214 aaPredicted RBP17.39■□□□□ 0.37
CHD3-207ENST00000466233 FMR1Q06787 632 aaKnown RBP eCLIP17.39■□□□□ 0.37
CHD3-207ENST00000466233 PODNQ7Z5L7 613 aa17.39■□□□□ 0.37
CHD3-207ENST00000466233 TSPYL6Q8N831 410 aa17.39■□□□□ 0.37
CHD3-207ENST00000466233 PI4KAP1Q8N8J0 262 aa17.39■□□□□ 0.37
CHD3-207ENST00000466233 SEC31BQ9NQW1 1179 aa17.39■□□□□ 0.37
CHD3-207ENST00000466233 BSDC1Q9NW68 430 aaPredicted RBP17.39■□□□□ 0.37
CHD3-207ENST00000466233 ZBTB12Q9Y330 459 aaPredicted RBP17.39■□□□□ 0.37
CHD3-207ENST00000466233 TAF1P21675 1872 aa17.38■□□□□ 0.37
CHD3-207ENST00000466233 RIMBP2O15034 1052 aa17.38■□□□□ 0.37
CHD3-207ENST00000466233 UFL1O94874 794 aa17.38■□□□□ 0.37
CHD3-207ENST00000466233 IGKV5-2P06315 115 aa17.38■□□□□ 0.37
CHD3-207ENST00000466233 ZEB1P37275 1124 aaPredicted RBP17.38■□□□□ 0.37
CHD3-207ENST00000466233 CTSWP56202 376 aa17.38■□□□□ 0.37
CHD3-207ENST00000466233 ZNF280AP59817 542 aaPredicted RBP17.38■□□□□ 0.37
CHD3-207ENST00000466233 TWISTNBQ3B726 338 aaPredicted RBP17.38■□□□□ 0.37
CHD3-207ENST00000466233 CYP4F22Q6NT55 531 aa17.38■□□□□ 0.37
CHD3-207ENST00000466233 G3V3G9 751 aa17.37■□□□□ 0.37
CHD3-207ENST00000466233 H7C1W4 665 aa17.37■□□□□ 0.37
CHD3-207ENST00000466233 NOGQ13253 232 aa17.37■□□□□ 0.37
CHD3-207ENST00000466233 DCAF8Q5TAQ9 597 aa17.37■□□□□ 0.37
CHD3-207ENST00000466233 WDR63Q8IWG1 891 aa17.37■□□□□ 0.37
CHD3-207ENST00000466233 TTLL11Q8NHH1 800 aa17.37■□□□□ 0.37
CHD3-207ENST00000466233 DCPSQ96C86 337 aaKnown RBP17.37■□□□□ 0.37
CHD3-207ENST00000466233 PLA2G12BQ9BX93 195 aa17.37■□□□□ 0.37
CHD3-207ENST00000466233 NEURL1BA8MQ27 555 aa17.36■□□□□ 0.37
CHD3-207ENST00000466233 PAXIP1Q6ZW49 1069 aaPredicted RBP17.36■□□□□ 0.37
CHD3-207ENST00000466233 SAMD7Q7Z3H4 446 aa17.36■□□□□ 0.37
CHD3-207ENST00000466233 KRT26Q7Z3Y9 468 aa17.36■□□□□ 0.37
CHD3-207ENST00000466233 ZNF428Q96B54 188 aa17.36■□□□□ 0.37
CHD3-207ENST00000466233 SLC4A2P04920 1241 aa17.35■□□□□ 0.37
CHD3-207ENST00000466233 DOK7Q18PE1 504 aa17.35■□□□□ 0.37
CHD3-207ENST00000466233 RSBN1LQ6PCB5 846 aaPredicted RBP17.35■□□□□ 0.37
CHD3-207ENST00000466233 USP48Q86UV5 1035 aa17.35■□□□□ 0.37
CHD3-207ENST00000466233 GMLQ99445 158 aa17.35■□□□□ 0.37
CHD3-207ENST00000466233 SHTN1A0MZ66 631 aa17.34■□□□□ 0.37
CHD3-207ENST00000466233 COL4A1P02462 1669 aa17.34■□□□□ 0.37
CHD3-207ENST00000466233 KIF4BQ2VIQ3 1234 aa17.34■□□□□ 0.37
CHD3-207ENST00000466233 TSR2Q969E8 191 aaKnown RBP17.34■□□□□ 0.37
CHD3-207ENST00000466233 CCDC102AQ96A19 550 aa17.34■□□□□ 0.37
CHD3-207ENST00000466233 PITPNM2Q9BZ72 1349 aa17.34■□□□□ 0.37
CHD3-207ENST00000466233 KCNQ5Q9NR82 932 aa17.34■□□□□ 0.37
CHD3-207ENST00000466233 MED23Q9ULK4 1368 aa17.34■□□□□ 0.37
CHD3-207ENST00000466233 LEMD3Q9Y2U8 911 aa17.34■□□□□ 0.37
CHD3-207ENST00000466233 USP17L3A6NCW0 530 aa17.33■□□□□ 0.36
CHD3-207ENST00000466233 USP17L4A6NCW7 530 aa17.33■□□□□ 0.36
CHD3-207ENST00000466233 CAPN15O75808 1086 aa17.33■□□□□ 0.36
CHD3-207ENST00000466233 FKBP1BP68106 108 aa17.33■□□□□ 0.36
CHD3-207ENST00000466233 TBC1D10BQ4KMP7 808 aaPredicted RBP17.33■□□□□ 0.36
CHD3-207ENST00000466233 USP17L1Q7RTZ2 530 aa17.33■□□□□ 0.36
CHD3-207ENST00000466233 SULF1Q8IWU6 871 aa17.33■□□□□ 0.36
CHD3-207ENST00000466233 REM2Q8IYK8 340 aaPredicted RBP17.33■□□□□ 0.36
CHD3-207ENST00000466233 C2orf69Q8N8R5 385 aa17.33■□□□□ 0.36
CHD3-207ENST00000466233 LINS1Q8NG48 757 aa17.33■□□□□ 0.36
CHD3-207ENST00000466233 MYH16Q9H6N6 1097 aa17.33■□□□□ 0.36
CHD3-207ENST00000466233 MINPP1Q9UNW1 487 aa17.33■□□□□ 0.36
CHD3-207ENST00000466233 MYO3BQ8WXR4 1341 aa17.32■□□□□ 0.36
CHD3-207ENST00000466233 EGFRP00533 1210 aa17.32■□□□□ 0.36
CHD3-207ENST00000466233 CSF1RP07333 972 aa17.32■□□□□ 0.36
CHD3-207ENST00000466233 USP17L8P0C7I0 530 aa17.32■□□□□ 0.36
CHD3-207ENST00000466233 HUNKP57058 714 aa17.32■□□□□ 0.36
CHD3-207ENST00000466233 FLIIQ13045 1269 aa17.32■□□□□ 0.36
CHD3-207ENST00000466233 GCKRQ14397 625 aa17.32■□□□□ 0.36
CHD3-207ENST00000466233 CCDC184Q52MB2 194 aa17.32■□□□□ 0.36
CHD3-207ENST00000466233 COA1Q9GZY4 146 aa17.32■□□□□ 0.36
CHD3-207ENST00000466233 GBA2Q9HCG7 927 aaPredicted RBP17.32■□□□□ 0.36
CHD3-207ENST00000466233 RGMBQ6NW40 437 aa17.31■□□□□ 0.36
CHD3-207ENST00000466233 ANKRD2Q9GZV1 360 aa17.31■□□□□ 0.36
CHD3-207ENST00000466233 GREM2Q9H772 168 aa17.31■□□□□ 0.36
CHD3-207ENST00000466233 ZNF408Q9H9D4 720 aa17.31■□□□□ 0.36
CHD3-207ENST00000466233 ANP32CO43423 234 aa17.3■□□□□ 0.36
CHD3-207ENST00000466233 AOC2O75106 756 aa17.3■□□□□ 0.36
CHD3-207ENST00000466233 VAMP4O75379 141 aa17.3■□□□□ 0.36
CHD3-207ENST00000466233 IGHMBP2P38935 993 aaKnown RBP17.3■□□□□ 0.36
CHD3-207ENST00000466233 CCT4P50991 539 aaKnown RBP17.3■□□□□ 0.36
CHD3-207ENST00000466233 CASP7P55210 303 aa17.3■□□□□ 0.36
CHD3-207ENST00000466233 CWF19L2Q2TBE0 894 aaKnown RBP17.3■□□□□ 0.36
CHD3-207ENST00000466233 STRIP1Q5VSL9 837 aa17.3■□□□□ 0.36
CHD3-207ENST00000466233 DNAAF4Q8WXU2 420 aa17.3■□□□□ 0.36
CHD3-207ENST00000466233 MRS2Q9HD23 443 aa17.3■□□□□ 0.36
CHD3-207ENST00000466233 SAGE1Q9NXZ1 904 aa17.3■□□□□ 0.36
CHD3-207ENST00000466233 FANCIQ9NVI1 1328 aa17.29■□□□□ 0.36
CHD3-207ENST00000466233 G2E3Q7L622 706 aa17.29■□□□□ 0.36
CHD3-207ENST00000466233 UBE3BQ7Z3V4 1068 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms