RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 NASPP49321 788 aaPredicted RBP9.06□□□□□ -0.96
USP54-210ENST00000466048 LRP10Q7Z4F1 713 aa9.06□□□□□ -0.96
USP54-210ENST00000466048 CNBD1Q8NA66 436 aa9.06□□□□□ -0.96
USP54-210ENST00000466048 ARFGEF2Q9Y6D5 1785 aa9.06□□□□□ -0.96
USP54-210ENST00000466048 AFDNP55196 1824 aaKnown RBP9.06□□□□□ -0.96
USP54-210ENST00000466048 A1BGP04217 495 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 SART3Q15020 963 aaKnown RBP9.05□□□□□ -0.96
USP54-210ENST00000466048 PDCL2Q8N4E4 241 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 PI4K2BQ8TCG2 481 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 NBPF26B4DH59 902 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 ERVV-1B6SEH8 477 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 GPTP24298 496 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 NBPF10Q6P3W6 841 aaKnown RBP9.05□□□□□ -0.96
USP54-210ENST00000466048 NBPF15Q8N660 670 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 HDAC9Q9UKV0 1011 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 MAP3K15Q6ZN16 1313 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 PCCAP05165 728 aaPredicted RBP9.05□□□□□ -0.96
USP54-210ENST00000466048 CCDC85AQ96PX6 553 aaPredicted RBP9.05□□□□□ -0.96
USP54-210ENST00000466048 FSD1Q9BTV5 496 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 BCL9O00512 1426 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 ADRA2BP18089 450 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 IL6STP40189 918 aaPredicted RBP9.05□□□□□ -0.96
USP54-210ENST00000466048 LMBR1LQ6UX01 489 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 RALYLQ86SE5 291 aaKnown RBP9.05□□□□□ -0.96
USP54-210ENST00000466048 DNAJC10Q8IXB1 793 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 SIL1Q9H173 461 aa9.05□□□□□ -0.96
USP54-210ENST00000466048 PA2G4Q9UQ80 394 aaKnown RBP9.05□□□□□ -0.96
USP54-210ENST00000466048 ESPNB1AK53 854 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 UQCRFS1P1P0C7P4 283 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 PDE6BP35913 854 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 RBM5P52756 815 aaKnown RBP eCLIP9.04□□□□□ -0.96
USP54-210ENST00000466048 ISCA1Q9BUE6 129 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 C6orf229H3BNL8 230 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 PSMA5P28066 241 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 SPATA31A5Q5VU36 1347 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 SPATA31A7Q8IWB4 1347 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 SH3TC1Q8TE82 1336 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 JDP2Q8WYK2 163 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 NWD2Q9ULI1 1742 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 CDHR2Q9BYE9 1310 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 SGSM2O43147 1006 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 ALDH1B1P30837 517 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 TMC4Q7Z404 712 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 NOC3LQ8WTT2 800 aaKnown RBP9.04□□□□□ -0.96
USP54-210ENST00000466048 PLA2G12BQ9BX93 195 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 SHANK3Q9BYB0 1731 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 COL16A1Q07092 1604 aaPredicted RBP9.04□□□□□ -0.96
USP54-210ENST00000466048 LOC102724428A0A0B4J2F2 783 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 ATP5JP18859 108 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 SIK1P57059 783 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 TNNI3KQ59H18 835 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 TTLL7Q6ZT98 887 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 FPGT-TNNI3KV9GXZ4 949 aa9.04□□□□□ -0.96
USP54-210ENST00000466048 H0YIN7 160 aa9.03□□□□□ -0.96
USP54-210ENST00000466048 TTF1Q15361 905 aaPredicted RBP9.03□□□□□ -0.96
USP54-210ENST00000466048 GIGYF2Q6Y7W6 1299 aaKnown RBP9.03□□□□□ -0.96
USP54-210ENST00000466048 ANTXR1Q9H6X2 564 aa9.03□□□□□ -0.96
USP54-210ENST00000466048 ASAP1Q9ULH1 1129 aa9.03□□□□□ -0.96
USP54-210ENST00000466048 EYA2O00167 538 aa9.03□□□□□ -0.96
USP54-210ENST00000466048 MYO1BO43795 1136 aa9.03□□□□□ -0.96
USP54-210ENST00000466048 PDIA4P13667 645 aaKnown RBP9.03□□□□□ -0.96
USP54-210ENST00000466048 GSTO1P78417 241 aa9.03□□□□□ -0.96
USP54-210ENST00000466048 TSHZ3Q63HK5 1081 aa9.03□□□□□ -0.96
USP54-210ENST00000466048 LDHAL6AQ6ZMR3 332 aa9.03□□□□□ -0.96
USP54-210ENST00000466048 CTNNA3Q9UI47 895 aa9.03□□□□□ -0.96
USP54-210ENST00000466048 TRAK2O60296 914 aa9.03□□□□□ -0.96
USP54-210ENST00000466048 NEK4P51957 841 aa9.03□□□□□ -0.96
USP54-210ENST00000466048 ZBTB38Q8NAP3 1195 aaPredicted RBP9.03□□□□□ -0.96
USP54-210ENST00000466048 WNK3Q9BYP7 1800 aa9.03□□□□□ -0.96
USP54-210ENST00000466048 AK9Q5TCS8 1911 aa9.02□□□□□ -0.96
USP54-210ENST00000466048 GOLGA6L19H0YKK7 550 aa9.02□□□□□ -0.96
USP54-210ENST00000466048 SASH1O94885 1247 aa9.02□□□□□ -0.97
USP54-210ENST00000466048 HSPA4P34932 840 aa9.02□□□□□ -0.97
USP54-210ENST00000466048 PIP4K2AP48426 406 aaPredicted RBP9.02□□□□□ -0.97
USP54-210ENST00000466048 PTPN12Q05209 780 aaKnown RBP9.02□□□□□ -0.97
USP54-210ENST00000466048 PPP4R3BQ5MIZ7 849 aa9.02□□□□□ -0.97
USP54-210ENST00000466048 CAVIN1Q6NZI2 390 aaKnown RBP9.02□□□□□ -0.97
USP54-210ENST00000466048 IL17RAQ96F46 866 aa9.02□□□□□ -0.97
USP54-210ENST00000466048 KAZALD1Q96I82 304 aa9.02□□□□□ -0.97
USP54-210ENST00000466048 CCDC8Q9H0W5 538 aaPredicted RBP9.02□□□□□ -0.97
USP54-210ENST00000466048 HMG20BQ9P0W2 317 aa9.02□□□□□ -0.97
USP54-210ENST00000466048 MBD3O95983 291 aa9.02□□□□□ -0.97
USP54-210ENST00000466048 KRT32Q14532 448 aa9.02□□□□□ -0.97
USP54-210ENST00000466048 CCDC70Q6NSX1 233 aa9.02□□□□□ -0.97
USP54-210ENST00000466048 KIF2CQ99661 725 aa9.02□□□□□ -0.97
USP54-210ENST00000466048 CYP19A1P11511 503 aaPredicted RBP9.02□□□□□ -0.97
USP54-210ENST00000466048 CASP7P55210 303 aa9.02□□□□□ -0.97
USP54-210ENST00000466048 MAP3K12Q12852 859 aa9.02□□□□□ -0.97
USP54-210ENST00000466048 CWC27Q6UX04 472 aaKnown RBP9.02□□□□□ -0.97
USP54-210ENST00000466048 ZSCAN31Q96LW9 406 aaPredicted RBP9.02□□□□□ -0.97
USP54-210ENST00000466048 LRP2BPQ9P2M1 347 aa9.02□□□□□ -0.97
USP54-210ENST00000466048 RGL2O15211 777 aa9.01□□□□□ -0.97
USP54-210ENST00000466048 TRIM37O94972 964 aa9.01□□□□□ -0.97
USP54-210ENST00000466048 RFX5P48382 616 aaPredicted RBP9.01□□□□□ -0.97
USP54-210ENST00000466048 TFCP2Q12800 502 aa9.01□□□□□ -0.97
USP54-210ENST00000466048 DHX8Q14562 1220 aaKnown RBP9.01□□□□□ -0.97
USP54-210ENST00000466048 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.01□□□□□ -0.97
USP54-210ENST00000466048 CNKSR1Q969H4 720 aa9.01□□□□□ -0.97
USP54-210ENST00000466048 EAF2Q96CJ1 260 aaPredicted RBP9.01□□□□□ -0.97
USP54-210ENST00000466048 WWC3Q9ULE0 1092 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms