RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 GPSM2P81274 684 aa14.89□□□□□ -0.03
VPS52-213ENST00000461743 EPHA10Q5JZY3 1008 aa14.89□□□□□ -0.03
VPS52-213ENST00000461743 SLC51AQ86UW1 340 aa14.89□□□□□ -0.03
VPS52-213ENST00000461743 FTSJ3Q8IY81 847 aaKnown RBP14.89□□□□□ -0.03
VPS52-213ENST00000461743 NIM1KQ8IY84 436 aa14.89□□□□□ -0.03
VPS52-213ENST00000461743 KAZALD1Q96I82 304 aa14.89□□□□□ -0.03
VPS52-213ENST00000461743 ANKRD2Q9GZV1 360 aa14.89□□□□□ -0.03
VPS52-213ENST00000461743 BICC1Q9H694 974 aaKnown RBP14.89□□□□□ -0.03
VPS52-213ENST00000461743 GGA1Q9UJY5 639 aa14.89□□□□□ -0.03
VPS52-213ENST00000461743 NSFL1CQ9UNZ2 370 aaKnown RBP14.89□□□□□ -0.03
VPS52-213ENST00000461743 CHMP3Q9Y3E7 222 aa14.89□□□□□ -0.03
VPS52-213ENST00000461743 ADAMTSL1Q8N6G6 1762 aa14.88□□□□□ -0.03
VPS52-213ENST00000461743 MED23Q9ULK4 1368 aa14.88□□□□□ -0.03
VPS52-213ENST00000461743 ANKRD44Q8N8A2 993 aa14.88□□□□□ -0.03
VPS52-213ENST00000461743 TBC1D16Q8TBP0 767 aa14.88□□□□□ -0.03
VPS52-213ENST00000461743 L3MBTL3Q96JM7 780 aaPredicted RBP14.88□□□□□ -0.03
VPS52-213ENST00000461743 ANKIB1Q9P2G1 1089 aa14.88□□□□□ -0.03
VPS52-213ENST00000461743 ZNF609O15014 1411 aa14.87□□□□□ -0.03
VPS52-213ENST00000461743 UFL1O94874 794 aa14.87□□□□□ -0.03
VPS52-213ENST00000461743 ATP2B4P23634 1241 aa14.87□□□□□ -0.03
VPS52-213ENST00000461743 EIF6P56537 245 aaKnown RBP14.87□□□□□ -0.03
VPS52-213ENST00000461743 AOC3Q16853 763 aa14.87□□□□□ -0.03
VPS52-213ENST00000461743 WASHC4Q2M389 1173 aa14.87□□□□□ -0.03
VPS52-213ENST00000461743 TAF7LQ5H9L4 462 aa14.87□□□□□ -0.03
VPS52-213ENST00000461743 GPC2Q8N158 579 aa14.87□□□□□ -0.03
VPS52-213ENST00000461743 RCAN3Q9UKA8 241 aa14.87□□□□□ -0.03
VPS52-213ENST00000461743 MINPP1Q9UNW1 487 aa14.87□□□□□ -0.03
VPS52-213ENST00000461743 C6orf229H3BNL8 230 aa14.86□□□□□ -0.03
VPS52-213ENST00000461743 DZIP1LQ8IYY4 767 aaKnown RBP14.86□□□□□ -0.03
VPS52-213ENST00000461743 ZNF526Q8TF50 670 aaPredicted RBP14.86□□□□□ -0.03
VPS52-213ENST00000461743 POLLQ9UGP5 575 aa14.86□□□□□ -0.03
VPS52-213ENST00000461743 ZNRF3Q9ULT6 936 aa14.86□□□□□ -0.03
VPS52-213ENST00000461743 LEMD3Q9Y2U8 911 aa14.86□□□□□ -0.03
VPS52-213ENST00000461743 ZNF541Q9H0D2 1346 aa14.86□□□□□ -0.03
VPS52-213ENST00000461743 IQCA1LA6NCM1 817 aa14.85□□□□□ -0.03
VPS52-213ENST00000461743 MEIS3Q99687 375 aa14.85□□□□□ -0.03
VPS52-213ENST00000461743 KIF3CO14782 793 aa14.84□□□□□ -0.03
VPS52-213ENST00000461743 CHRNDQ07001 517 aa14.84□□□□□ -0.03
VPS52-213ENST00000461743 TMEM57Q8N5G2 664 aa14.84□□□□□ -0.03
VPS52-213ENST00000461743 ZC3H12CQ9C0D7 883 aaKnown RBP14.84□□□□□ -0.03
VPS52-213ENST00000461743 FBXO3Q9UK99 471 aa14.84□□□□□ -0.03
VPS52-213ENST00000461743 ECM29Q5VYK3 1845 aa14.84□□□□□ -0.03
VPS52-213ENST00000461743 MROH5Q6ZUA9 1318 aa14.84□□□□□ -0.03
VPS52-213ENST00000461743 VEGFAP15692 232 aaPredicted RBP14.83□□□□□ -0.04
VPS52-213ENST00000461743 MTX1Q13505 466 aa14.83□□□□□ -0.04
VPS52-213ENST00000461743 LDHAL6AQ6ZMR3 332 aa14.83□□□□□ -0.04
VPS52-213ENST00000461743 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.83□□□□□ -0.04
VPS52-213ENST00000461743 CLUAP1Q96AJ1 413 aa14.83□□□□□ -0.04
VPS52-213ENST00000461743 NMRK2Q9NPI5 230 aa14.83□□□□□ -0.04
VPS52-213ENST00000461743 CNNM1Q9NRU3 951 aa14.83□□□□□ -0.04
VPS52-213ENST00000461743 LRRFIP2Q9Y608 721 aaKnown RBP14.83□□□□□ -0.04
VPS52-213ENST00000461743 ZNF804BA4D1E1 1349 aa14.83□□□□□ -0.04
VPS52-213ENST00000461743 TNIP1Q15025 636 aa14.82□□□□□ -0.04
VPS52-213ENST00000461743 C15orf52Q6ZUT6 534 aaKnown RBP14.82□□□□□ -0.04
VPS52-213ENST00000461743 TNNQ9UQP3 1299 aa14.82□□□□□ -0.04
VPS52-213ENST00000461743 ECE2O60344 883 aa14.81□□□□□ -0.04
VPS52-213ENST00000461743 DDNO94850 711 aaPredicted RBP14.81□□□□□ -0.04
VPS52-213ENST00000461743 GNAI2P04899 355 aa14.81□□□□□ -0.04
VPS52-213ENST00000461743 KCNJ4P48050 445 aa14.81□□□□□ -0.04
VPS52-213ENST00000461743 CIAPIN1Q6FI81 312 aa14.81□□□□□ -0.04
VPS52-213ENST00000461743 ITPRIPQ8IWB1 547 aa14.81□□□□□ -0.04
VPS52-213ENST00000461743 C16orf71Q8IYS4 520 aaPredicted RBP14.81□□□□□ -0.04
VPS52-213ENST00000461743 TRPM7Q96QT4 1865 aa14.8□□□□□ -0.04
VPS52-213ENST00000461743 YDJCA8MPS7 323 aa14.8□□□□□ -0.04
VPS52-213ENST00000461743 TOMM70O94826 608 aa14.8□□□□□ -0.04
VPS52-213ENST00000461743 RLBP1P12271 317 aa14.8□□□□□ -0.04
VPS52-213ENST00000461743 RFX5P48382 616 aaPredicted RBP14.8□□□□□ -0.04
VPS52-213ENST00000461743 PODNQ7Z5L7 613 aa14.8□□□□□ -0.04
VPS52-213ENST00000461743 RBM46Q8TBY0 533 aaKnown RBP14.8□□□□□ -0.04
VPS52-213ENST00000461743 ZNF594Q96JF6 807 aaPredicted RBP14.8□□□□□ -0.04
VPS52-213ENST00000461743 CHMP4BQ9H444 224 aaKnown RBP14.8□□□□□ -0.04
VPS52-213ENST00000461743 RRAGCQ9HB90 399 aa14.8□□□□□ -0.04
VPS52-213ENST00000461743 RIPOR2Q9Y4F9 1068 aa14.8□□□□□ -0.04
VPS52-213ENST00000461743 G3V3G9 751 aa14.79□□□□□ -0.04
VPS52-213ENST00000461743 RIMBP2O15034 1052 aa14.79□□□□□ -0.04
VPS52-213ENST00000461743 CIAO1O76071 339 aa14.79□□□□□ -0.04
VPS52-213ENST00000461743 RPS12P25398 132 aaKnown RBP14.79□□□□□ -0.04
VPS52-213ENST00000461743 LMOD1P29536 600 aaPredicted RBP14.79□□□□□ -0.04
VPS52-213ENST00000461743 PTPN12Q05209 780 aaKnown RBP14.79□□□□□ -0.04
VPS52-213ENST00000461743 CXCL9Q07325 125 aa14.79□□□□□ -0.04
VPS52-213ENST00000461743 UBE4AQ14139 1066 aa14.79□□□□□ -0.04
VPS52-213ENST00000461743 DCAF8Q5TAQ9 597 aa14.79□□□□□ -0.04
VPS52-213ENST00000461743 YTHDC1Q96MU7 727 aaKnown RBP14.79□□□□□ -0.04
VPS52-213ENST00000461743 COA1Q9GZY4 146 aa14.79□□□□□ -0.04
VPS52-213ENST00000461743 DBNDD1Q9H9R9 158 aa14.79□□□□□ -0.04
VPS52-213ENST00000461743 COPRSQ9NQ92 184 aa14.79□□□□□ -0.04
VPS52-213ENST00000461743 HACL1Q9UJ83 578 aa14.79□□□□□ -0.04
VPS52-213ENST00000461743 IRS2Q9Y4H2 1338 aa14.79□□□□□ -0.04
VPS52-213ENST00000461743 POTECB2RU33 542 aa14.78□□□□□ -0.04
VPS52-213ENST00000461743 EYA2O00167 538 aa14.78□□□□□ -0.04
VPS52-213ENST00000461743 PDE3AQ14432 1141 aa14.78□□□□□ -0.04
VPS52-213ENST00000461743 VGLL2Q8N8G2 317 aa14.78□□□□□ -0.04
VPS52-213ENST00000461743 GPR101Q96P66 508 aaPredicted RBP14.78□□□□□ -0.04
VPS52-213ENST00000461743 DDX19BQ9UMR2 479 aa14.78□□□□□ -0.04
VPS52-213ENST00000461743 GJA3Q9Y6H8 435 aa14.78□□□□□ -0.04
VPS52-213ENST00000461743 MYO3BQ8WXR4 1341 aa14.77□□□□□ -0.04
VPS52-213ENST00000461743 SCNN1DP51172 638 aa14.77□□□□□ -0.05
VPS52-213ENST00000461743 FSTL1Q12841 308 aa14.77□□□□□ -0.05
VPS52-213ENST00000461743 MVPQ14764 893 aaKnown RBP14.77□□□□□ -0.05
VPS52-213ENST00000461743 METTL24Q5JXM2 366 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms