RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 GNPATO15228 680 aa13.62□□□□□ -0.23
NPHP4-204ENST00000460696 CCAR2Q8N163 923 aaKnown RBP13.62□□□□□ -0.23
NPHP4-204ENST00000460696 RAI14Q9P0K7 980 aa13.62□□□□□ -0.23
NPHP4-204ENST00000460696 ORC3Q9UBD5 711 aaPredicted RBP13.62□□□□□ -0.23
NPHP4-204ENST00000460696 JCADQ9P266 1359 aa13.61□□□□□ -0.23
NPHP4-204ENST00000460696 CEP57L1Q8IYX8 460 aa13.61□□□□□ -0.23
NPHP4-204ENST00000460696 FSIP1Q8NA03 581 aa13.61□□□□□ -0.23
NPHP4-204ENST00000460696 PLBD2Q8NHP8 589 aa13.61□□□□□ -0.23
NPHP4-204ENST00000460696 SEC62Q99442 399 aaKnown RBP13.61□□□□□ -0.23
NPHP4-204ENST00000460696 NAPBQ9H115 298 aa13.61□□□□□ -0.23
NPHP4-204ENST00000460696 DDX19AQ9NUU7 478 aaKnown RBP13.61□□□□□ -0.23
NPHP4-204ENST00000460696 AGLP35573 1532 aa13.61□□□□□ -0.23
NPHP4-204ENST00000460696 ME3Q16798 604 aa13.61□□□□□ -0.23
NPHP4-204ENST00000460696 HELBQ8NG08 1087 aaPredicted RBP13.61□□□□□ -0.23
NPHP4-204ENST00000460696 HOOK1Q9UJC3 728 aaKnown RBP13.61□□□□□ -0.23
NPHP4-204ENST00000460696 MAP2P11137 1827 aaKnown RBP13.61□□□□□ -0.23
NPHP4-204ENST00000460696 MINDY4BA8MYZ0 360 aa13.61□□□□□ -0.23
NPHP4-204ENST00000460696 ATP2B3Q16720 1220 aa13.61□□□□□ -0.23
NPHP4-204ENST00000460696 OLFM4Q6UX06 510 aa13.61□□□□□ -0.23
NPHP4-204ENST00000460696 MICU3Q86XE3 530 aa13.61□□□□□ -0.23
NPHP4-204ENST00000460696 TRIM22Q8IYM9 498 aa13.61□□□□□ -0.23
NPHP4-204ENST00000460696 LSG1Q9H089 658 aaKnown RBP13.61□□□□□ -0.23
NPHP4-204ENST00000460696 CRB1P82279 1406 aa13.61□□□□□ -0.23
NPHP4-204ENST00000460696 KDRP35968 1356 aa13.6□□□□□ -0.23
NPHP4-204ENST00000460696 KLF18A0A0U1RQI7 1052 aa13.6□□□□□ -0.23
NPHP4-204ENST00000460696 A0A1B0GUL7 405 aa13.6□□□□□ -0.23
NPHP4-204ENST00000460696 PDILTQ8N807 584 aa13.6□□□□□ -0.23
NPHP4-204ENST00000460696 ZKSCAN5Q9Y2L8 839 aa13.6□□□□□ -0.23
NPHP4-204ENST00000460696 TMEM131LA2VDJ0 1609 aa13.6□□□□□ -0.23
NPHP4-204ENST00000460696 BIN1O00499 593 aa13.6□□□□□ -0.23
NPHP4-204ENST00000460696 RPS6KB1P23443 525 aa13.6□□□□□ -0.23
NPHP4-204ENST00000460696 IGHMBP2P38935 993 aaKnown RBP13.6□□□□□ -0.23
NPHP4-204ENST00000460696 RBM6P78332 1123 aaKnown RBP13.6□□□□□ -0.23
NPHP4-204ENST00000460696 DEFB132Q7Z7B7 95 aa13.6□□□□□ -0.23
NPHP4-204ENST00000460696 JMYQ8N9B5 988 aa13.6□□□□□ -0.23
NPHP4-204ENST00000460696 TTLL7Q6ZT98 887 aa13.6□□□□□ -0.23
NPHP4-204ENST00000460696 PIBF1Q8WXW3 757 aa13.6□□□□□ -0.23
NPHP4-204ENST00000460696 ZNF622Q969S3 477 aaKnown RBP eCLIP13.6□□□□□ -0.23
NPHP4-204ENST00000460696 ATF5Q9Y2D1 282 aaPredicted RBP13.6□□□□□ -0.23
NPHP4-204ENST00000460696 ADAMTS13Q76LX8 1427 aa13.59□□□□□ -0.23
NPHP4-204ENST00000460696 CCAR1Q8IX12 1150 aaKnown RBP13.59□□□□□ -0.23
NPHP4-204ENST00000460696 PI4K2BQ8TCG2 481 aa13.59□□□□□ -0.23
NPHP4-204ENST00000460696 IQSEC3Q9UPP2 1182 aaPredicted RBP13.59□□□□□ -0.23
NPHP4-204ENST00000460696 DLC1Q96QB1 1528 aa13.59□□□□□ -0.23
NPHP4-204ENST00000460696 CEP170BQ9Y4F5 1589 aaPredicted RBP13.59□□□□□ -0.23
NPHP4-204ENST00000460696 STK32BQ9NY57 414 aa13.59□□□□□ -0.23
NPHP4-204ENST00000460696 USP31Q70CQ4 1352 aa13.59□□□□□ -0.23
NPHP4-204ENST00000460696 GJD4Q96KN9 370 aaPredicted RBP13.59□□□□□ -0.23
NPHP4-204ENST00000460696 UBAC1Q9BSL1 405 aa13.59□□□□□ -0.23
NPHP4-204ENST00000460696 OVOS2A0A0J9YW53 1432 aa13.59□□□□□ -0.23
NPHP4-204ENST00000460696 OVOS2Q6IE36 1432 aa13.59□□□□□ -0.23
NPHP4-204ENST00000460696 EYA2O00167 538 aa13.58□□□□□ -0.23
NPHP4-204ENST00000460696 JAK2O60674 1132 aa13.58□□□□□ -0.23
NPHP4-204ENST00000460696 EN1Q05925 392 aaPredicted RBP13.58□□□□□ -0.23
NPHP4-204ENST00000460696 POLA2Q14181 598 aa13.58□□□□□ -0.23
NPHP4-204ENST00000460696 ANO6Q4KMQ2 910 aa13.58□□□□□ -0.23
NPHP4-204ENST00000460696 SLC9C2Q5TAH2 1124 aa13.58□□□□□ -0.23
NPHP4-204ENST00000460696 ISM2Q6H9L7 571 aa13.58□□□□□ -0.23
NPHP4-204ENST00000460696 DHX32Q7L7V1 743 aaKnown RBP13.58□□□□□ -0.23
NPHP4-204ENST00000460696 NOL10Q9BSC4 688 aaKnown RBP13.58□□□□□ -0.23
NPHP4-204ENST00000460696 NSFL1CQ9UNZ2 370 aaKnown RBP13.58□□□□□ -0.23
NPHP4-204ENST00000460696 RAD21O60216 631 aa13.58□□□□□ -0.24
NPHP4-204ENST00000460696 CDKL5O76039 1030 aa13.58□□□□□ -0.24
NPHP4-204ENST00000460696 XBP1P17861 261 aa13.58□□□□□ -0.24
NPHP4-204ENST00000460696 UVSSAQ2YD98 709 aa13.58□□□□□ -0.24
NPHP4-204ENST00000460696 CDC37L1Q7L3B6 337 aa13.58□□□□□ -0.24
NPHP4-204ENST00000460696 TEX13AQ9BXU3 409 aaPredicted RBP13.58□□□□□ -0.24
NPHP4-204ENST00000460696 NCOA5Q9HCD5 579 aaKnown RBP13.58□□□□□ -0.24
NPHP4-204ENST00000460696 CDC42BPGQ6DT37 1551 aa13.58□□□□□ -0.24
NPHP4-204ENST00000460696 SERPINC1P01008 464 aa13.58□□□□□ -0.24
NPHP4-204ENST00000460696 ERBB3P21860 1342 aa13.58□□□□□ -0.24
NPHP4-204ENST00000460696 GNL3LQ9NVN8 582 aaKnown RBP13.58□□□□□ -0.24
NPHP4-204ENST00000460696 MCM5P33992 734 aa13.57□□□□□ -0.24
NPHP4-204ENST00000460696 MAP3K12Q12852 859 aa13.57□□□□□ -0.24
NPHP4-204ENST00000460696 NCOA7Q8NI08 942 aa13.57□□□□□ -0.24
NPHP4-204ENST00000460696 DNAJC25Q9H1X3 360 aa13.57□□□□□ -0.24
NPHP4-204ENST00000460696 ZSCAN16Q9H4T2 348 aaPredicted RBP13.57□□□□□ -0.24
NPHP4-204ENST00000460696 TPCN1Q9ULQ1 816 aa13.57□□□□□ -0.24
NPHP4-204ENST00000460696 SSH2Q76I76 1423 aa13.57□□□□□ -0.24
NPHP4-204ENST00000460696 ATP10DQ9P241 1426 aa13.57□□□□□ -0.24
NPHP4-204ENST00000460696 IFIT3O14879 490 aaKnown RBP13.57□□□□□ -0.24
NPHP4-204ENST00000460696 RNF113AO15541 343 aaKnown RBP13.57□□□□□ -0.24
NPHP4-204ENST00000460696 SASH1O94885 1247 aa13.57□□□□□ -0.24
NPHP4-204ENST00000460696 CUL4AQ13619 759 aa13.57□□□□□ -0.24
NPHP4-204ENST00000460696 KIF13AQ9H1H9 1805 aa13.57□□□□□ -0.24
NPHP4-204ENST00000460696 PTPDC1A2A3K4 754 aa13.57□□□□□ -0.24
NPHP4-204ENST00000460696 CLIP2Q9UDT6 1046 aa13.57□□□□□ -0.24
NPHP4-204ENST00000460696 MARCH6O60337 910 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 AMOTL1Q8IY63 956 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 KBTBD3Q8NAB2 608 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 DBNLQ9UJU6 430 aaKnown RBP13.56□□□□□ -0.24
NPHP4-204ENST00000460696 TYRO3Q06418 890 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 FAM200AQ8TCP9 573 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 ANO10Q9NW15 660 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 PCDH11XQ9BZA7 1347 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 PCDH11YQ9BZA8 1340 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 DNAJC10Q8IXB1 793 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 TM6SF1Q9BZW5 370 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 KCNQ2O43526 872 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 LARGE1O95461 756 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms