RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 POTEB2H3BUK9 544 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 FZD6O60353 706 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 PRPF40AO75400 957 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 IGHA2P01877 340 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 HOXB1P14653 301 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 ZNF76P36508 570 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 EIF1AXP47813 144 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 PLCB3Q01970 1234 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 USP4Q13107 963 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 UVSSAQ2YD98 709 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 ERFEQ4G0M1 354 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 C4orf48Q5BLP8 95 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 TBCELQ5QJ74 424 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 TMC4Q7Z404 712 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 GPKOWQ92917 476 aaPredicted RBP eCLIP5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 ITFG2Q969R8 447 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 VTI1AQ96AJ9 217 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 GPATCH3Q96I76 525 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 PRKD2Q9BZL6 878 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 TGIF2Q9GZN2 237 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 ZC3H13Q5T200 1668 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 LRRC7Q96NW7 1537 aa5.9□□□□□ -1.46
CCDC88A-209ENST00000456975 ARHGAP33O14559 1287 aa5.9□□□□□ -1.46
CCDC88A-209ENST00000456975 NPR3P17342 541 aa5.9□□□□□ -1.46
CCDC88A-209ENST00000456975 BDNFP23560 247 aa5.9□□□□□ -1.46
CCDC88A-209ENST00000456975 HNRNPMP52272 730 aaKnown RBP eCLIP5.9□□□□□ -1.46
CCDC88A-209ENST00000456975 DAB2P98082 770 aa5.9□□□□□ -1.46
CCDC88A-209ENST00000456975 AGERQ15109 404 aa5.9□□□□□ -1.46
CCDC88A-209ENST00000456975 LINC01559Q495D7 138 aa5.9□□□□□ -1.46
CCDC88A-209ENST00000456975 FAM26DQ5JW98 314 aa5.9□□□□□ -1.46
CCDC88A-209ENST00000456975 ZCRB1Q8TBF4 217 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-209ENST00000456975 FOXJ1Q92949 421 aa5.9□□□□□ -1.46
CCDC88A-209ENST00000456975 ZSWIM4Q9H7M6 989 aa5.9□□□□□ -1.46
CCDC88A-209ENST00000456975 RBM28Q9NW13 759 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-209ENST00000456975 NPHP4O75161 1426 aaPredicted RBP5.9□□□□□ -1.46
CCDC88A-209ENST00000456975 A2MP01023 1474 aa5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 CAMSAP2Q08AD1 1489 aa5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 ROBO1Q9Y6N7 1651 aa5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 TLDC2A0PJX2 215 aa5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 ZBTB39O15060 712 aa5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 DXOO77932 396 aaKnown RBP5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 TDO2P48775 406 aa5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 NEXNQ0ZGT2 675 aa5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 POTEAQ6S8J7 498 aa5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 SH3RF1Q7Z6J0 888 aa5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 NOP9Q86U38 636 aaKnown RBP5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 NLGN1Q8N2Q7 840 aa5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 LRCH3Q96II8 777 aa5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 TSPAN10Q9H1Z9 355 aaPredicted RBP5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 TMA7Q9Y2S6 64 aaKnown RBP5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 PCDHB3Q9Y5E6 796 aa5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 PHLPP1O60346 1717 aa5.9□□□□□ -1.47
CCDC88A-209ENST00000456975 ARHGEF5Q12774 1597 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 UGGT1Q9NYU2 1555 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 FGD6Q6ZV73 1430 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 STK10O94804 968 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 PARNO95453 639 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 PDE3BQ13370 1112 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 PPP1R18Q6NYC8 613 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 MAP7D2Q96T17 732 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 SPOCK3Q9BQ16 436 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 NIF3L1Q9GZT8 377 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 SMC3Q9UQE7 1217 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 CEP83Q9Y592 693 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 RTEL1-TNFRSF6BF6WH68 1400 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 CCDC194A0A1B0GVG4 234 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 TMEM229AB2RXF0 380 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 RACK1P63244 317 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 C1QTNF12Q5T7M4 302 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 BAP1Q92560 729 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 IRF2BPLQ9H1B7 796 aa5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 TPX2Q9ULW0 747 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-209ENST00000456975 TNRQ92752 1358 aa5.88□□□□□ -1.47
CCDC88A-209ENST00000456975 CCDC141Q6ZP82 1450 aa5.88□□□□□ -1.47
CCDC88A-209ENST00000456975 A0A1W2PRU2 124 aa5.88□□□□□ -1.47
CCDC88A-209ENST00000456975 ESPNB1AK53 854 aa5.88□□□□□ -1.47
CCDC88A-209ENST00000456975 U2SURPO15042 1029 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-209ENST00000456975 ZC3H12AQ5D1E8 599 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-209ENST00000456975 GGT6Q6P531 493 aa5.88□□□□□ -1.47
CCDC88A-209ENST00000456975 SPSB2Q99619 263 aa5.88□□□□□ -1.47
CCDC88A-209ENST00000456975 CUEDC1Q9NWM3 386 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-209ENST00000456975 SERTAD1Q9UHV2 236 aa5.88□□□□□ -1.47
CCDC88A-209ENST00000456975 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.88□□□□□ -1.47
CCDC88A-209ENST00000456975 CFAP65Q6ZU64 1925 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-209ENST00000456975 MED14O60244 1454 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 KDM5DQ9BY66 1539 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 FAM135AQ9P2D6 1515 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 PNMA6FA0A0J9YX94 578 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 BHMG1C9JSJ3 638 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 CTSHP09668 335 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 COX20Q5RI15 118 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 SNRNP27Q8WVK2 155 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 PAIP2Q9BPZ3 127 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 GNL3LQ9NVN8 582 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 SYNPO2Q9UMS6 1093 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 SPAG9O60271 1321 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 PTPN23Q9H3S7 1636 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 MAST1Q9Y2H9 1570 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms