RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 FXR2P51116 673 aaKnown RBP eCLIP11.02□□□□□ -0.65
SYNE1-214ENST00000454018 UBE3BQ7Z3V4 1068 aa11.02□□□□□ -0.65
SYNE1-214ENST00000454018 NUTM1Q86Y26 1132 aa11.02□□□□□ -0.65
SYNE1-214ENST00000454018 PANK1Q8TE04 598 aa11.02□□□□□ -0.65
SYNE1-214ENST00000454018 TRPC6Q9Y210 931 aa11.02□□□□□ -0.65
SYNE1-214ENST00000454018 LRRC37AA6NMS7 1700 aa11.02□□□□□ -0.65
SYNE1-214ENST00000454018 H7C1W4 665 aa11.01□□□□□ -0.65
SYNE1-214ENST00000454018 MVPQ14764 893 aaKnown RBP11.01□□□□□ -0.65
SYNE1-214ENST00000454018 ERFEQ4G0M1 354 aa11.01□□□□□ -0.65
SYNE1-214ENST00000454018 FAM89AQ96GI7 184 aa11.01□□□□□ -0.65
SYNE1-214ENST00000454018 BRIP1Q9BX63 1249 aa11.01□□□□□ -0.65
SYNE1-214ENST00000454018 DDX19BQ9UMR2 479 aa11.01□□□□□ -0.65
SYNE1-214ENST00000454018 SUPT16HQ9Y5B9 1047 aaKnown RBP11.01□□□□□ -0.65
SYNE1-214ENST00000454018 GRXCR2A6NFK2 248 aa11□□□□□ -0.65
SYNE1-214ENST00000454018 IRS4O14654 1257 aaPredicted RBP11□□□□□ -0.65
SYNE1-214ENST00000454018 GNAI3P08754 354 aa11□□□□□ -0.65
SYNE1-214ENST00000454018 UBTFL1P0CB47 393 aaPredicted RBP11□□□□□ -0.65
SYNE1-214ENST00000454018 PDE6BP35913 854 aa11□□□□□ -0.65
SYNE1-214ENST00000454018 CASP7P55210 303 aa11□□□□□ -0.65
SYNE1-214ENST00000454018 SLC10A5Q5PT55 438 aa11□□□□□ -0.65
SYNE1-214ENST00000454018 USP44Q9H0E7 712 aa11□□□□□ -0.65
SYNE1-214ENST00000454018 CHMP4BQ9H444 224 aaKnown RBP11□□□□□ -0.65
SYNE1-214ENST00000454018 PPP1R1BQ9UD71 204 aaPredicted RBP11□□□□□ -0.65
SYNE1-214ENST00000454018 PDZRN3Q9UPQ7 1066 aa11□□□□□ -0.65
SYNE1-214ENST00000454018 HDAC5Q9UQL6 1122 aa11□□□□□ -0.65
SYNE1-214ENST00000454018 CD2APQ9Y5K6 639 aa11□□□□□ -0.65
SYNE1-214ENST00000454018 SLX4Q8IY92 1834 aa11□□□□□ -0.65
SYNE1-214ENST00000454018 RTL5Q5HYW3 569 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-214ENST00000454018 C20orf194Q5TEA3 1177 aa10.99□□□□□ -0.65
SYNE1-214ENST00000454018 PLA2G12BQ9BX93 195 aa10.99□□□□□ -0.65
SYNE1-214ENST00000454018 COG6Q9Y2V7 657 aa10.99□□□□□ -0.65
SYNE1-214ENST00000454018 PDE8AO60658 829 aa10.99□□□□□ -0.65
SYNE1-214ENST00000454018 NBPF7P0C2Y1 421 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-214ENST00000454018 CRY2Q49AN0 593 aa10.99□□□□□ -0.65
SYNE1-214ENST00000454018 NLRP3Q96P20 1036 aa10.99□□□□□ -0.65
SYNE1-214ENST00000454018 MEIS3Q99687 375 aa10.99□□□□□ -0.65
SYNE1-214ENST00000454018 RTL9Q8NET4 1388 aa10.98□□□□□ -0.65
SYNE1-214ENST00000454018 KLRG2A4D1S0 409 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-214ENST00000454018 HCLS1P14317 486 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-214ENST00000454018 FECHP22830 423 aa10.98□□□□□ -0.65
SYNE1-214ENST00000454018 CTSWP56202 376 aa10.98□□□□□ -0.65
SYNE1-214ENST00000454018 TGFB2P61812 414 aa10.98□□□□□ -0.65
SYNE1-214ENST00000454018 SYNE4Q8N205 404 aa10.98□□□□□ -0.65
SYNE1-214ENST00000454018 CCDC24Q8N4L8 307 aa10.98□□□□□ -0.65
SYNE1-214ENST00000454018 FER1L6Q2WGJ9 1857 aa10.97□□□□□ -0.65
SYNE1-214ENST00000454018 PDIA4P13667 645 aaKnown RBP10.97□□□□□ -0.65
SYNE1-214ENST00000454018 CCDC82Q8N4S0 544 aa10.97□□□□□ -0.65
SYNE1-214ENST00000454018 JARID2Q92833 1246 aaPredicted RBP10.97□□□□□ -0.65
SYNE1-214ENST00000454018 SUCLG2Q96I99 432 aa10.97□□□□□ -0.65
SYNE1-214ENST00000454018 FHDC1Q9C0D6 1143 aaPredicted RBP10.97□□□□□ -0.65
SYNE1-214ENST00000454018 GOPCQ9HD26 462 aa10.97□□□□□ -0.65
SYNE1-214ENST00000454018 CCDC88AQ3V6T2 1871 aa10.97□□□□□ -0.65
SYNE1-214ENST00000454018 LTBP1Q14766 1721 aa10.96□□□□□ -0.65
SYNE1-214ENST00000454018 A6NJR5 290 aa10.96□□□□□ -0.65
SYNE1-214ENST00000454018 H0YIN7 160 aa10.96□□□□□ -0.65
SYNE1-214ENST00000454018 ZBTB7BO15156 539 aaPredicted RBP10.96□□□□□ -0.65
SYNE1-214ENST00000454018 TRAK2O60296 914 aa10.96□□□□□ -0.65
SYNE1-214ENST00000454018 GNAI2P04899 355 aa10.96□□□□□ -0.65
SYNE1-214ENST00000454018 SF3B3Q15393 1217 aaKnown RBP10.96□□□□□ -0.65
SYNE1-214ENST00000454018 CCDC152Q4G0S7 254 aa10.96□□□□□ -0.65
SYNE1-214ENST00000454018 RPGRQ92834 1020 aaKnown RBP10.96□□□□□ -0.65
SYNE1-214ENST00000454018 LRRFIP2Q9Y608 721 aaKnown RBP10.96□□□□□ -0.65
SYNE1-214ENST00000454018 COL4A1P02462 1669 aa10.96□□□□□ -0.66
SYNE1-214ENST00000454018 SRGNP10124 158 aa10.95□□□□□ -0.66
SYNE1-214ENST00000454018 NPR1P16066 1061 aa10.95□□□□□ -0.66
SYNE1-214ENST00000454018 RABL6Q3YEC7 729 aaPredicted RBP10.95□□□□□ -0.66
SYNE1-214ENST00000454018 C3orf67Q6ZVT6 689 aa10.95□□□□□ -0.66
SYNE1-214ENST00000454018 C2CD5Q86YS7 1000 aa10.95□□□□□ -0.66
SYNE1-214ENST00000454018 MASTLQ96GX5 879 aa10.95□□□□□ -0.66
SYNE1-214ENST00000454018 KAZALD1Q96I82 304 aa10.95□□□□□ -0.66
SYNE1-214ENST00000454018 BICC1Q9H694 974 aaKnown RBP10.95□□□□□ -0.66
SYNE1-214ENST00000454018 SRCAPQ6ZRS2 3230 aa10.95□□□□□ -0.66
SYNE1-214ENST00000454018 HOXA10P31260 410 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-214ENST00000454018 FOXK1P85037 733 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 FOXO4P98177 505 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 AAMPQ13685 434 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 STYK1Q6J9G0 422 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 TTLL11Q8NHH1 800 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 CRBNQ96SW2 442 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 ZBTB40Q9NUA8 1239 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 MYH13Q9UKX3 1938 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 DICER1Q9UPY3 1922 aaKnown RBP10.94□□□□□ -0.66
SYNE1-214ENST00000454018 ARAP2Q8WZ64 1704 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 CSF1RP07333 972 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 DPEP1P16444 411 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 OSBPP22059 807 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 CHRNA5P30532 468 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 MTX1Q13505 466 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 TTLL12Q14166 644 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-214ENST00000454018 FAM161AQ3B820 660 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 EPHA10Q5JZY3 1008 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 LMBR1LQ6UX01 489 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 DDX46Q7L014 1031 aaKnown RBP10.94□□□□□ -0.66
SYNE1-214ENST00000454018 ANKRD44Q8N8A2 993 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 RBM17Q96I25 401 aaKnown RBP10.94□□□□□ -0.66
SYNE1-214ENST00000454018 CRAMP1Q96RY5 1269 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 SYT17Q9BSW7 474 aa10.94□□□□□ -0.66
SYNE1-214ENST00000454018 SBF1O95248 1867 aa10.93□□□□□ -0.66
SYNE1-214ENST00000454018 ALDH1B1P30837 517 aa10.93□□□□□ -0.66
SYNE1-214ENST00000454018 NLGN2Q8NFZ4 835 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms