RNA–Protein interactions for RNA: ENST00000449234.1

RFX3-208, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-208	ENST00000449234	PCDH11X	Q9BZA7	1347 aa		13.6	□□□□□ -0.23
RFX3-208	ENST00000449234	PCDH11Y	Q9BZA8	1340 aa		13.6	□□□□□ -0.23
RFX3-208	ENST00000449234	VPS37C	A5D8V6	355 aa	Predicted RBP	13.59	□□□□□ -0.23
RFX3-208	ENST00000449234	GOLGA6L6	A8MZA4	724 aa		13.59	□□□□□ -0.23
RFX3-208	ENST00000449234	NAA16	Q6N069	864 aa	Predicted RBP	13.59	□□□□□ -0.23
RFX3-208	ENST00000449234	RBM43	Q6ZSC3	357 aa	Known RBP	13.59	□□□□□ -0.23
RFX3-208	ENST00000449234	UBE3B	Q7Z3V4	1068 aa		13.59	□□□□□ -0.23
RFX3-208	ENST00000449234	MTERF4	Q7Z6M4	381 aa	Known RBP	13.59	□□□□□ -0.23
RFX3-208	ENST00000449234	SMARCC2	Q8TAQ2	1214 aa		13.59	□□□□□ -0.23
RFX3-208	ENST00000449234	ZCRB1	Q8TBF4	217 aa	Known RBP	13.59	□□□□□ -0.23
RFX3-208	ENST00000449234	GTF3C6	Q969F1	213 aa		13.59	□□□□□ -0.23
RFX3-208	ENST00000449234	AGXT2	Q9BYV1	514 aa		13.59	□□□□□ -0.23
RFX3-208	ENST00000449234	SPEF2	Q9C093	1822 aa		13.59	□□□□□ -0.23
RFX3-208	ENST00000449234	ABCC12	Q96J65	1359 aa		13.58	□□□□□ -0.23
RFX3-208	ENST00000449234	FIBP	O43427	364 aa		13.58	□□□□□ -0.24
RFX3-208	ENST00000449234	PFKFB2	O60825	505 aa		13.58	□□□□□ -0.24
RFX3-208	ENST00000449234	ZFY	P08048	801 aa	Predicted RBP	13.58	□□□□□ -0.24
RFX3-208	ENST00000449234	MNX1	P50219	401 aa	Predicted RBP	13.58	□□□□□ -0.24
RFX3-208	ENST00000449234	MAP3K11	Q16584	847 aa		13.58	□□□□□ -0.24
RFX3-208	ENST00000449234	ZMYM1	Q5SVZ6	1142 aa		13.58	□□□□□ -0.24
RFX3-208	ENST00000449234	LMBR1L	Q6UX01	489 aa		13.58	□□□□□ -0.24
RFX3-208	ENST00000449234	DHX32	Q7L7V1	743 aa	Known RBP	13.58	□□□□□ -0.24
RFX3-208	ENST00000449234	RNF214	Q8ND24	703 aa		13.58	□□□□□ -0.24
RFX3-208	ENST00000449234	AKAP2	Q9Y2D5	859 aa		13.58	□□□□□ -0.24
RFX3-208	ENST00000449234	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.58	□□□□□ -0.24
RFX3-208	ENST00000449234	TCHH	Q07283	1943 aa		13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	GOLGA6L4	A6NEF3	574 aa		13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	EYA2	O00167	538 aa		13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	CTAGE5	O15320	804 aa		13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	ADCY5	O95622	1261 aa		13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	EXOSC10	Q01780	885 aa	Known RBP	13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	EVX2	Q03828	476 aa		13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	SASS6	Q6UVJ0	657 aa		13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	ATG9A	Q7Z3C6	839 aa		13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	TTC6	Q86TZ1	520 aa		13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	NECAB1	Q8N987	351 aa		13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	ZNF274	Q96GC6	653 aa	Predicted RBP	13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	DBNDD2	Q9BQY9	259 aa		13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	CTNNA3	Q9UI47	895 aa		13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	ARFGEF2	Q9Y6D5	1785 aa		13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	WDR17	Q8IZU2	1322 aa		13.57	□□□□□ -0.24
RFX3-208	ENST00000449234	HSP90AA2P	Q14568	343 aa	Predicted RBP	13.56	□□□□□ -0.24
RFX3-208	ENST00000449234	VSIG10	Q8N0Z9	540 aa		13.56	□□□□□ -0.24
RFX3-208	ENST00000449234	FAM200A	Q8TCP9	573 aa		13.56	□□□□□ -0.24
RFX3-208	ENST00000449234	PIBF1	Q8WXW3	757 aa		13.56	□□□□□ -0.24
RFX3-208	ENST00000449234	SPATA32	Q96LK8	384 aa		13.56	□□□□□ -0.24
RFX3-208	ENST00000449234	PRIMPOL	Q96LW4	560 aa		13.56	□□□□□ -0.24
RFX3-208	ENST00000449234	LARP6	Q9BRS8	491 aa	Known RBP	13.56	□□□□□ -0.24
RFX3-208	ENST00000449234	CARD10	Q9BWT7	1032 aa		13.56	□□□□□ -0.24
RFX3-208	ENST00000449234	PLA2G12B	Q9BX93	195 aa		13.56	□□□□□ -0.24
RFX3-208	ENST00000449234	NUP62CL	Q9H1M0	184 aa		13.56	□□□□□ -0.24
RFX3-208	ENST00000449234	PAG1	Q9NWQ8	432 aa		13.56	□□□□□ -0.24
RFX3-208	ENST00000449234	AFDN	P55196	1824 aa	Known RBP	13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	NBPF26	B4DH59	902 aa		13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	DYNC1I1	O14576	645 aa		13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	RNF113A	O15541	343 aa	Known RBP	13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	CYP21A2	P08686	494 aa		13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	EVC	P57679	992 aa		13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	GLIPR1L2	Q4G1C9	344 aa		13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	NBPF14	Q5TI25	921 aa		13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	NBPF10	Q6P3W6	841 aa	Known RBP	13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.55	□□□□□ -0.24
RFX3-208	ENST00000449234		Q6ZUG5	572 aa		13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	NBPF15	Q8N660	670 aa		13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	KLHDC4	Q8TBB5	520 aa		13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	LEO1	Q8WVC0	666 aa	Predicted RBP	13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	ZNF396	Q96N95	335 aa	Predicted RBP	13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	ISCA1	Q9BUE6	129 aa		13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	PDCL3	Q9H2J4	239 aa		13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	RCOR1	Q9UKL0	485 aa		13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	ZNF609	O15014	1411 aa		13.55	□□□□□ -0.24
RFX3-208	ENST00000449234	HCLS1	P14317	486 aa	Predicted RBP	13.54	□□□□□ -0.24
RFX3-208	ENST00000449234	REST	Q13127	1097 aa		13.54	□□□□□ -0.24
RFX3-208	ENST00000449234	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.54	□□□□□ -0.24
RFX3-208	ENST00000449234	CLSTN2	Q9H4D0	955 aa		13.54	□□□□□ -0.24
RFX3-208	ENST00000449234	SPTLC3	Q9NUV7	552 aa		13.54	□□□□□ -0.24
RFX3-208	ENST00000449234	CEP126	Q9P2H0	1117 aa		13.54	□□□□□ -0.24
RFX3-208	ENST00000449234	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
RFX3-208	ENST00000449234	GLI3	P10071	1580 aa		13.54	□□□□□ -0.24
RFX3-208	ENST00000449234	ATP5J2-PTCD1	G3V325	749 aa		13.53	□□□□□ -0.24
RFX3-208	ENST00000449234	PTCD1	O75127	700 aa	Known RBP	13.53	□□□□□ -0.24
RFX3-208	ENST00000449234	TCIRG1	Q13488	830 aa		13.53	□□□□□ -0.24
RFX3-208	ENST00000449234	CCDC158	Q5M9N0	1113 aa		13.53	□□□□□ -0.24
RFX3-208	ENST00000449234	GIMAP6	Q6P9H5	292 aa		13.53	□□□□□ -0.24
RFX3-208	ENST00000449234	CDC37L1	Q7L3B6	337 aa		13.53	□□□□□ -0.24
RFX3-208	ENST00000449234	DNAJC2	Q99543	621 aa	Known RBP	13.53	□□□□□ -0.24
RFX3-208	ENST00000449234	WDR19	Q8NEZ3	1342 aa		13.53	□□□□□ -0.24
RFX3-208	ENST00000449234	TNS2	Q63HR2	1409 aa		13.53	□□□□□ -0.24
RFX3-208	ENST00000449234	UBR2	Q8IWV8	1755 aa		13.53	□□□□□ -0.24
RFX3-208	ENST00000449234		H3BQV1	296 aa		13.52	□□□□□ -0.25
RFX3-208	ENST00000449234	PCCA	P05165	728 aa	Predicted RBP	13.52	□□□□□ -0.25
RFX3-208	ENST00000449234	IFIT1	P09914	478 aa	Known RBP	13.52	□□□□□ -0.25
RFX3-208	ENST00000449234	IL2RB	P14784	551 aa		13.52	□□□□□ -0.25
RFX3-208	ENST00000449234	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
RFX3-208	ENST00000449234	IFFO2	Q5TF58	517 aa		13.52	□□□□□ -0.25
RFX3-208	ENST00000449234	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.52	□□□□□ -0.25
RFX3-208	ENST00000449234	TNMD	Q9H2S6	317 aa		13.52	□□□□□ -0.25
RFX3-208	ENST00000449234	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms