RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 ITPK1Q13572 414 aa12.8□□□□□ -0.36
VIPAS39-203ENST00000448935 ATG9AQ7Z3C6 839 aa12.8□□□□□ -0.36
VIPAS39-203ENST00000448935 CEP126Q9P2H0 1117 aa12.8□□□□□ -0.36
VIPAS39-203ENST00000448935 AKAP2Q9Y2D5 859 aa12.8□□□□□ -0.36
VIPAS39-203ENST00000448935 MYH14Q7Z406 1995 aaKnown RBP12.79□□□□□ -0.36
VIPAS39-203ENST00000448935 BCORQ6W2J9 1755 aa12.79□□□□□ -0.36
VIPAS39-203ENST00000448935 CNTNAP4Q9C0A0 1308 aa12.79□□□□□ -0.36
VIPAS39-203ENST00000448935 IRS4O14654 1257 aaPredicted RBP12.79□□□□□ -0.36
VIPAS39-203ENST00000448935 ONECUT3O60422 494 aaPredicted RBP12.79□□□□□ -0.36
VIPAS39-203ENST00000448935 DBNLQ9UJU6 430 aaKnown RBP12.79□□□□□ -0.36
VIPAS39-203ENST00000448935 SH3TC1Q8TE82 1336 aa12.78□□□□□ -0.36
VIPAS39-203ENST00000448935 ANKRD18BA2A2Z9 1011 aa12.78□□□□□ -0.36
VIPAS39-203ENST00000448935 CAMTA2O94983 1202 aa12.78□□□□□ -0.36
VIPAS39-203ENST00000448935 CTSWP56202 376 aa12.78□□□□□ -0.36
VIPAS39-203ENST00000448935 RC3H1Q5TC82 1133 aaKnown RBP12.78□□□□□ -0.36
VIPAS39-203ENST00000448935 CLEC4GQ6UXB4 293 aa12.78□□□□□ -0.36
VIPAS39-203ENST00000448935 IL17RAQ96F46 866 aa12.78□□□□□ -0.36
VIPAS39-203ENST00000448935 TLR7Q9NYK1 1049 aaKnown RBP12.78□□□□□ -0.36
VIPAS39-203ENST00000448935 ZNF609O15014 1411 aa12.78□□□□□ -0.36
VIPAS39-203ENST00000448935 MCM2P49736 904 aa12.77□□□□□ -0.36
VIPAS39-203ENST00000448935 CHADLQ6NUI6 762 aa12.77□□□□□ -0.36
VIPAS39-203ENST00000448935 CWC27Q6UX04 472 aaKnown RBP12.77□□□□□ -0.36
VIPAS39-203ENST00000448935 FBXO22Q8NEZ5 403 aa12.77□□□□□ -0.36
VIPAS39-203ENST00000448935 TTLL11Q8NHH1 800 aa12.77□□□□□ -0.36
VIPAS39-203ENST00000448935 FSD1Q9BTV5 496 aa12.77□□□□□ -0.36
VIPAS39-203ENST00000448935 UTP14AQ9BVJ6 771 aaKnown RBP12.77□□□□□ -0.36
VIPAS39-203ENST00000448935 SLKQ9H2G2 1235 aaPredicted RBP12.77□□□□□ -0.36
VIPAS39-203ENST00000448935 BOLA2Q9H3K6 86 aa12.77□□□□□ -0.36
VIPAS39-203ENST00000448935 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.77□□□□□ -0.36
VIPAS39-203ENST00000448935 SPEF2Q9C093 1822 aa12.77□□□□□ -0.36
VIPAS39-203ENST00000448935 LAMB2P55268 1798 aa12.77□□□□□ -0.36
VIPAS39-203ENST00000448935 SBF2Q86WG5 1849 aa12.77□□□□□ -0.37
VIPAS39-203ENST00000448935 HSP90AA1P07900 732 aaKnown RBP12.77□□□□□ -0.37
VIPAS39-203ENST00000448935 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.77□□□□□ -0.37
VIPAS39-203ENST00000448935 DBNDD2Q9BQY9 259 aa12.77□□□□□ -0.37
VIPAS39-203ENST00000448935 ANTXR1Q9H6X2 564 aa12.77□□□□□ -0.37
VIPAS39-203ENST00000448935 CHMP5Q9NZZ3 219 aa12.77□□□□□ -0.37
VIPAS39-203ENST00000448935 FARP1Q9Y4F1 1045 aaPredicted RBP12.77□□□□□ -0.37
VIPAS39-203ENST00000448935 UBN2Q6ZU65 1347 aa12.76□□□□□ -0.37
VIPAS39-203ENST00000448935 LY75O60449 1722 aa12.76□□□□□ -0.37
VIPAS39-203ENST00000448935 HMGB2P26583 209 aaKnown RBP12.76□□□□□ -0.37
VIPAS39-203ENST00000448935 HSPA4P34932 840 aa12.76□□□□□ -0.37
VIPAS39-203ENST00000448935 LRRC24Q50LG9 513 aa12.76□□□□□ -0.37
VIPAS39-203ENST00000448935 ZNF594Q96JF6 807 aaPredicted RBP12.76□□□□□ -0.37
VIPAS39-203ENST00000448935 NEUROD6Q96NK8 337 aa12.76□□□□□ -0.37
VIPAS39-203ENST00000448935 HAUS7Q99871 368 aa12.76□□□□□ -0.37
VIPAS39-203ENST00000448935 A0A1B0GUL7 405 aa12.75□□□□□ -0.37
VIPAS39-203ENST00000448935 ITGA6P23229 1130 aa12.75□□□□□ -0.37
VIPAS39-203ENST00000448935 LINC00116Q8NCU8 138 aa12.75□□□□□ -0.37
VIPAS39-203ENST00000448935 SNRKQ9NRH2 765 aa12.75□□□□□ -0.37
VIPAS39-203ENST00000448935 NIP7Q9Y221 180 aaKnown RBP eCLIP12.75□□□□□ -0.37
VIPAS39-203ENST00000448935 SCN7AQ01118 1682 aa12.75□□□□□ -0.37
VIPAS39-203ENST00000448935 LRRFIP1Q32MZ4 808 aaKnown RBP12.74□□□□□ -0.37
VIPAS39-203ENST00000448935 CCDC158Q5M9N0 1113 aa12.74□□□□□ -0.37
VIPAS39-203ENST00000448935 SUSD4Q5VX71 490 aa12.74□□□□□ -0.37
VIPAS39-203ENST00000448935 LDHAL6AQ6ZMR3 332 aa12.74□□□□□ -0.37
VIPAS39-203ENST00000448935 LSG1Q9H089 658 aaKnown RBP12.74□□□□□ -0.37
VIPAS39-203ENST00000448935 ABCC12Q96J65 1359 aa12.74□□□□□ -0.37
VIPAS39-203ENST00000448935 RPS6KA4O75676 772 aa12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 GORABQ5T7V8 394 aa12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 SMYD5Q6GMV2 418 aa12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 SEPT12Q8IYM1 358 aa12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 EFCAB3Q8N7B9 438 aa12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 PUS3Q9BZE2 481 aaKnown RBP12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 GREM2Q9H772 168 aa12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 CNNM1Q9NRU3 951 aa12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 CCNL1Q9UK58 526 aaPredicted RBP12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 RTL9Q8NET4 1388 aa12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 DDX60Q8IY21 1712 aaKnown RBP12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 TAF1LQ8IZX4 1826 aa12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 TIMM10P62072 90 aa12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 NFKBIBQ15653 356 aa12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 CCDC152Q4G0S7 254 aa12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 METTL24Q5JXM2 366 aa12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 QTRT2Q9H974 415 aaKnown RBP12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 RIPOR2Q9Y4F9 1068 aa12.73□□□□□ -0.37
VIPAS39-203ENST00000448935 LRP5O75197 1615 aa12.72□□□□□ -0.37
VIPAS39-203ENST00000448935 CCDC171Q6TFL3 1326 aa12.72□□□□□ -0.37
VIPAS39-203ENST00000448935 MROH5Q6ZUA9 1318 aa12.72□□□□□ -0.37
VIPAS39-203ENST00000448935 ZMYND10O75800 440 aa12.72□□□□□ -0.37
VIPAS39-203ENST00000448935 NTSR2O95665 410 aa12.72□□□□□ -0.37
VIPAS39-203ENST00000448935 IFIT1P09914 478 aaKnown RBP12.72□□□□□ -0.37
VIPAS39-203ENST00000448935 NEK4P51957 841 aa12.72□□□□□ -0.37
VIPAS39-203ENST00000448935 NMIQ13287 307 aaPredicted RBP12.72□□□□□ -0.37
VIPAS39-203ENST00000448935 POTEAQ6S8J7 498 aa12.72□□□□□ -0.37
VIPAS39-203ENST00000448935 SYNE4Q8N205 404 aa12.72□□□□□ -0.37
VIPAS39-203ENST00000448935 KBTBD3Q8NAB2 608 aa12.72□□□□□ -0.37
VIPAS39-203ENST00000448935 CCDC85AQ96PX6 553 aaPredicted RBP12.72□□□□□ -0.37
VIPAS39-203ENST00000448935 DNAJC2Q99543 621 aaKnown RBP12.72□□□□□ -0.37
VIPAS39-203ENST00000448935 CD2BP2O95400 341 aaKnown RBP12.71□□□□□ -0.37
VIPAS39-203ENST00000448935 ZKSCAN1P17029 563 aaPredicted RBP12.71□□□□□ -0.37
VIPAS39-203ENST00000448935 ATP2B3Q16720 1220 aa12.71□□□□□ -0.37
VIPAS39-203ENST00000448935 TTC39AQ5SRH9 613 aa12.71□□□□□ -0.37
VIPAS39-203ENST00000448935 RNF20Q5VTR2 975 aa12.71□□□□□ -0.37
VIPAS39-203ENST00000448935 NYXQ9GZU5 481 aa12.71□□□□□ -0.37
VIPAS39-203ENST00000448935 IL25Q9H293 177 aa12.71□□□□□ -0.37
VIPAS39-203ENST00000448935 CWC22Q9HCG8 908 aaKnown RBP12.71□□□□□ -0.37
VIPAS39-203ENST00000448935 PAG1Q9NWQ8 432 aa12.71□□□□□ -0.37
VIPAS39-203ENST00000448935 NARFQ9UHQ1 456 aa12.71□□□□□ -0.37
VIPAS39-203ENST00000448935 RTCBQ9Y3I0 505 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms