RNA–Protein interactions for RNA: ENST00000448878.6

CHCHD3-203, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 5 BASIC

Gene CHCHD3, Length 1,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-203ENST00000448878 TRPA1O75762 1119 aa23.46■■□□□ 1.35
CHCHD3-203ENST00000448878 RPS8P62241 208 aaKnown RBP23.46■■□□□ 1.35
CHCHD3-203ENST00000448878 SULF1Q8IWU6 871 aa23.46■■□□□ 1.35
CHCHD3-203ENST00000448878 ISCA1Q9BUE6 129 aa23.46■■□□□ 1.35
CHCHD3-203ENST00000448878 DBF4Q9UBU7 674 aaPredicted RBP23.46■■□□□ 1.35
CHCHD3-203ENST00000448878 DDX60Q8IY21 1712 aaKnown RBP23.45■■□□□ 1.34
CHCHD3-203ENST00000448878 FAM155AB1AL88 458 aaPredicted RBP23.45■■□□□ 1.34
CHCHD3-203ENST00000448878 TBC1D16Q8TBP0 767 aa23.45■■□□□ 1.34
CHCHD3-203ENST00000448878 GGA3Q9NZ52 723 aa23.44■■□□□ 1.34
CHCHD3-203ENST00000448878 ANKIB1Q9P2G1 1089 aa23.44■■□□□ 1.34
CHCHD3-203ENST00000448878 LRRC37AA6NMS7 1700 aa23.44■■□□□ 1.34
CHCHD3-203ENST00000448878 POLR2AP24928 1970 aaKnown RBP23.43■■□□□ 1.34
CHCHD3-203ENST00000448878 RTL9Q8NET4 1388 aa23.43■■□□□ 1.34
CHCHD3-203ENST00000448878 RIC3Q7Z5B4 369 aa23.43■■□□□ 1.34
CHCHD3-203ENST00000448878 HYPKQ9NX55 129 aa23.43■■□□□ 1.34
CHCHD3-203ENST00000448878 RNF186Q9NXI6 227 aa23.43■■□□□ 1.34
CHCHD3-203ENST00000448878 UFL1O94874 794 aa23.42■■□□□ 1.34
CHCHD3-203ENST00000448878 RALBP1Q15311 655 aa23.42■■□□□ 1.34
CHCHD3-203ENST00000448878 SAGE1Q9NXZ1 904 aa23.42■■□□□ 1.34
CHCHD3-203ENST00000448878 SOX10P56693 466 aa23.41■■□□□ 1.34
CHCHD3-203ENST00000448878 ASTN2O75129 1339 aaPredicted RBP23.4■■□□□ 1.34
CHCHD3-203ENST00000448878 VIL1P09327 827 aaKnown RBP23.4■■□□□ 1.34
CHCHD3-203ENST00000448878 WDR43Q15061 677 aaKnown RBP eCLIP23.4■■□□□ 1.34
CHCHD3-203ENST00000448878 CDCA5Q96FF9 252 aa23.4■■□□□ 1.34
CHCHD3-203ENST00000448878 SEC31BQ9NQW1 1179 aa23.4■■□□□ 1.34
CHCHD3-203ENST00000448878 GGA1Q9UJY5 639 aa23.4■■□□□ 1.34
CHCHD3-203ENST00000448878 TRIM35Q9UPQ4 493 aa23.4■■□□□ 1.34
CHCHD3-203ENST00000448878 DUSP27Q5VZP5 1158 aa23.39■■□□□ 1.33
CHCHD3-203ENST00000448878 RUNDC1Q96C34 613 aa23.39■■□□□ 1.33
CHCHD3-203ENST00000448878 CCDC85AQ96PX6 553 aaPredicted RBP23.39■■□□□ 1.33
CHCHD3-203ENST00000448878 SLC10A3P09131 477 aa23.38■■□□□ 1.33
CHCHD3-203ENST00000448878 HOXB7P09629 217 aa23.38■■□□□ 1.33
CHCHD3-203ENST00000448878 HSP90B1P14625 803 aaKnown RBP23.38■■□□□ 1.33
CHCHD3-203ENST00000448878 GOLGA2Q08379 1002 aa23.38■■□□□ 1.33
CHCHD3-203ENST00000448878 SCARF1Q14162 830 aa23.38■■□□□ 1.33
CHCHD3-203ENST00000448878 ANGEL2Q5VTE6 544 aaKnown RBP23.38■■□□□ 1.33
CHCHD3-203ENST00000448878 CSRNP1Q96S65 589 aa23.38■■□□□ 1.33
CHCHD3-203ENST00000448878 COL4A1P02462 1669 aa23.38■■□□□ 1.33
CHCHD3-203ENST00000448878 ZBTB38Q8NAP3 1195 aaPredicted RBP23.37■■□□□ 1.33
CHCHD3-203ENST00000448878 JARID2Q92833 1246 aaPredicted RBP23.37■■□□□ 1.33
CHCHD3-203ENST00000448878 MYD88Q99836 296 aa23.37■■□□□ 1.33
CHCHD3-203ENST00000448878 TRIM28Q13263 835 aaKnown RBP23.36■■□□□ 1.33
CHCHD3-203ENST00000448878 RSBN1LQ6PCB5 846 aaPredicted RBP23.36■■□□□ 1.33
CHCHD3-203ENST00000448878 PODXL2Q9NZ53 605 aa23.36■■□□□ 1.33
CHCHD3-203ENST00000448878 CCDC152Q4G0S7 254 aa23.35■■□□□ 1.33
CHCHD3-203ENST00000448878 PHAXQ9H814 394 aaKnown RBP23.35■■□□□ 1.33
CHCHD3-203ENST00000448878 AKAP11Q9UKA4 1901 aa23.35■■□□□ 1.33
CHCHD3-203ENST00000448878 ELL2O00472 640 aaPredicted RBP23.34■■□□□ 1.33
CHCHD3-203ENST00000448878 AGBL3Q8NEM8 1001 aa23.34■■□□□ 1.33
CHCHD3-203ENST00000448878 SCAF8Q9UPN6 1271 aaKnown RBP23.34■■□□□ 1.33
CHCHD3-203ENST00000448878 CTU1Q7Z7A3 348 aaKnown RBP23.33■■□□□ 1.33
CHCHD3-203ENST00000448878 MBIPQ9NS73 344 aa23.33■■□□□ 1.33
CHCHD3-203ENST00000448878 PDE8AO60658 829 aa23.32■■□□□ 1.32
CHCHD3-203ENST00000448878 USP17L8P0C7I0 530 aa23.32■■□□□ 1.32
CHCHD3-203ENST00000448878 ZNF280AP59817 542 aaPredicted RBP23.32■■□□□ 1.32
CHCHD3-203ENST00000448878 TTLL12Q14166 644 aaPredicted RBP23.32■■□□□ 1.32
CHCHD3-203ENST00000448878 RASAL3Q86YV0 1011 aa23.32■■□□□ 1.32
CHCHD3-203ENST00000448878 ANKRD18AQ8IVF6 992 aa23.32■■□□□ 1.32
CHCHD3-203ENST00000448878 REM2Q8IYK8 340 aaPredicted RBP23.32■■□□□ 1.32
CHCHD3-203ENST00000448878 MYOZ2Q9NPC6 264 aa23.32■■□□□ 1.32
CHCHD3-203ENST00000448878 SCN9AQ15858 1988 aa23.32■■□□□ 1.32
CHCHD3-203ENST00000448878 MYBBP1AQ9BQG0 1328 aaKnown RBP23.32■■□□□ 1.32
CHCHD3-203ENST00000448878 FBXW7Q969H0 707 aa23.31■■□□□ 1.32
CHCHD3-203ENST00000448878 HDAC9Q9UKV0 1011 aa23.31■■□□□ 1.32
CHCHD3-203ENST00000448878 ADAMTS8Q9UP79 889 aa23.31■■□□□ 1.32
CHCHD3-203ENST00000448878 USP17L3A6NCW0 530 aa23.3■■□□□ 1.32
CHCHD3-203ENST00000448878 USP17L4A6NCW7 530 aa23.3■■□□□ 1.32
CHCHD3-203ENST00000448878 PCCAP05165 728 aaPredicted RBP23.3■■□□□ 1.32
CHCHD3-203ENST00000448878 PRAMEF18Q5VWM3 479 aa23.3■■□□□ 1.32
CHCHD3-203ENST00000448878 MOB2Q70IA6 237 aa23.3■■□□□ 1.32
CHCHD3-203ENST00000448878 USP17L1Q7RTZ2 530 aa23.3■■□□□ 1.32
CHCHD3-203ENST00000448878 CCDC191Q8NCU4 936 aa23.3■■□□□ 1.32
CHCHD3-203ENST00000448878 CWC25Q9NXE8 425 aaPredicted RBP23.3■■□□□ 1.32
CHCHD3-203ENST00000448878 XDHP47989 1333 aa23.3■■□□□ 1.32
CHCHD3-203ENST00000448878 UBE2Q2LH0YL09 131 aa23.29■■□□□ 1.32
CHCHD3-203ENST00000448878 ATP2B4P23634 1241 aa23.29■■□□□ 1.32
CHCHD3-203ENST00000448878 FKBP1BP68106 108 aa23.29■■□□□ 1.32
CHCHD3-203ENST00000448878 TBC1D8O95759 1140 aa23.28■■□□□ 1.32
CHCHD3-203ENST00000448878 DDX10Q13206 875 aaKnown RBP23.28■■□□□ 1.32
CHCHD3-203ENST00000448878 PODNQ7Z5L7 613 aa23.28■■□□□ 1.32
CHCHD3-203ENST00000448878 TNRC18O15417 2968 aaPredicted RBP23.28■■□□□ 1.32
CHCHD3-203ENST00000448878 PCDH10Q9P2E7 1040 aa23.27■■□□□ 1.32
CHCHD3-203ENST00000448878 DDX58O95786 925 aaKnown RBP23.26■■□□□ 1.31
CHCHD3-203ENST00000448878 MKRN3Q13064 507 aaKnown RBP23.26■■□□□ 1.31
CHCHD3-203ENST00000448878 PITPNM2Q9BZ72 1349 aa23.26■■□□□ 1.31
CHCHD3-203ENST00000448878 NF2P35240 595 aa23.25■■□□□ 1.31
CHCHD3-203ENST00000448878 NBPF9Q3BBW0 867 aa23.25■■□□□ 1.31
CHCHD3-203ENST00000448878 OGFOD1Q8N543 542 aa23.25■■□□□ 1.31
CHCHD3-203ENST00000448878 GMLQ99445 158 aa23.25■■□□□ 1.31
CHCHD3-203ENST00000448878 CDC5LQ99459 802 aaKnown RBP23.25■■□□□ 1.31
CHCHD3-203ENST00000448878 METTL22Q9BUU2 404 aaPredicted RBP23.25■■□□□ 1.31
CHCHD3-203ENST00000448878 HPS5Q9UPZ3 1129 aa23.25■■□□□ 1.31
CHCHD3-203ENST00000448878 GNAI1P63096 354 aa23.24■■□□□ 1.31
CHCHD3-203ENST00000448878 MXD3Q9BW11 206 aa23.24■■□□□ 1.31
CHCHD3-203ENST00000448878 PAPPA2Q9BXP8 1791 aa23.24■■□□□ 1.31
CHCHD3-203ENST00000448878 WTIPA6NIX2 430 aaPredicted RBP23.23■■□□□ 1.31
CHCHD3-203ENST00000448878 ZNF296Q8WUU4 475 aaPredicted RBP23.23■■□□□ 1.31
CHCHD3-203ENST00000448878 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.23■■□□□ 1.31
CHCHD3-203ENST00000448878 CALD1Q05682 793 aaKnown RBP23.22■■□□□ 1.31
CHCHD3-203ENST00000448878 PRKG1Q13976 671 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms