RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 KRT23Q9C075 422 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 KAT14Q9H8E8 782 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 TNS3Q68CZ2 1445 aa8.65□□□□□ -1.02
SYNE1-213ENST00000448038 PTPRMP28827 1452 aa8.65□□□□□ -1.02
SYNE1-213ENST00000448038 ANAPC15P60006 121 aa8.65□□□□□ -1.02
SYNE1-213ENST00000448038 FAM182BQ5T319 152 aa8.65□□□□□ -1.02
SYNE1-213ENST00000448038 CABP5Q9NP86 173 aa8.65□□□□□ -1.02
SYNE1-213ENST00000448038 TTLL12Q14166 644 aaPredicted RBP8.65□□□□□ -1.02
SYNE1-213ENST00000448038 BEND3Q5T5X7 828 aa8.65□□□□□ -1.02
SYNE1-213ENST00000448038 XAGE2Q96GT9 111 aa8.65□□□□□ -1.02
SYNE1-213ENST00000448038 LRRC2Q9BYS8 371 aa8.65□□□□□ -1.02
SYNE1-213ENST00000448038 UFL1O94874 794 aa8.65□□□□□ -1.02
SYNE1-213ENST00000448038 ZNF853P0CG23 659 aa8.65□□□□□ -1.02
SYNE1-213ENST00000448038 IARSP41252 1262 aaKnown RBP8.65□□□□□ -1.02
SYNE1-213ENST00000448038 BAG6P46379 1132 aa8.65□□□□□ -1.02
SYNE1-213ENST00000448038 METAP2P50579 478 aaKnown RBP eCLIP8.65□□□□□ -1.02
SYNE1-213ENST00000448038 STX8Q9UNK0 236 aa8.65□□□□□ -1.02
SYNE1-213ENST00000448038 CEP131Q9UPN4 1083 aa8.65□□□□□ -1.02
SYNE1-213ENST00000448038 ADAMTS13Q76LX8 1427 aa8.65□□□□□ -1.03
SYNE1-213ENST00000448038 LDHBP07195 334 aaKnown RBP8.65□□□□□ -1.03
SYNE1-213ENST00000448038 KIF5BP33176 963 aa8.65□□□□□ -1.03
SYNE1-213ENST00000448038 ESR2Q92731 530 aa8.65□□□□□ -1.03
SYNE1-213ENST00000448038 PRAMEF22A3QJZ6 481 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 TAF5LO75529 589 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 GJB2P29033 226 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 CRKLP46109 303 aaKnown RBP8.64□□□□□ -1.03
SYNE1-213ENST00000448038 ZNF772Q68DY9 489 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-213ENST00000448038 NOC3LQ8WTT2 800 aaKnown RBP8.64□□□□□ -1.03
SYNE1-213ENST00000448038 CNNM2Q9H8M5 875 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 DENND2AQ9ULE3 1009 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 PREX1Q8TCU6 1659 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 CCDC192P0DO97 292 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 PICALMQ13492 652 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 WTAPQ15007 396 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 KLF18A0A0U1RQI7 1052 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 PPFIA3O75145 1194 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 GNAT2P19087 354 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 HIBADHP31937 336 aaKnown RBP8.64□□□□□ -1.03
SYNE1-213ENST00000448038 EPS15P42566 896 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 FEZ1Q99689 392 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 TRIM5Q9C035 493 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 ORC3Q9UBD5 711 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-213ENST00000448038 THRAP3Q9Y2W1 955 aaKnown RBP8.64□□□□□ -1.03
SYNE1-213ENST00000448038 C1orf167Q5SNV9 1468 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 TMX3Q96JJ7 454 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 ZHX3Q9H4I2 956 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 MAP3K15Q6ZN16 1313 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 DLC1Q96QB1 1528 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 TSPY3P0CV98 308 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 TSPY8P0CW00 308 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 NLRP5P59047 1200 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 FAM196AQ6ZSG2 479 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 JDP2Q8WYK2 163 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 ZBTB1Q9Y2K1 713 aa8.64□□□□□ -1.03
SYNE1-213ENST00000448038 RIMS1Q86UR5 1692 aaKnown RBP8.64□□□□□ -1.03
SYNE1-213ENST00000448038 SSFA2P28290 1259 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 CTSWP56202 376 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 USP31Q70CQ4 1352 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 CCDC171Q6TFL3 1326 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 TRIM37O94972 964 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 SSBP05455 408 aaKnown RBP eCLIP8.63□□□□□ -1.03
SYNE1-213ENST00000448038 NECAB1Q8N987 351 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 ZBTB38Q8NAP3 1195 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-213ENST00000448038 LPIN2Q92539 896 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 SCAND2PQ9GZW5 306 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-213ENST00000448038 NUP62CLQ9H1M0 184 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 VAT1LQ9HCJ6 419 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 GGA1Q9UJY5 639 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 KDM2BQ8NHM5 1336 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 RAD50Q92878 1312 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 CYP27B1O15528 508 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 PLCG2P16885 1265 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 IL27Q8NEV9 243 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 H0YIN7 160 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 IL6STP40189 918 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-213ENST00000448038 PDE4CQ08493 712 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 PIGBQ92521 554 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 RXRBP28702 533 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 CREB3L3Q68CJ9 461 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 TMTC2Q8N394 836 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 SSH3Q8TE77 659 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 SLC26A6Q9BXS9 759 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 MCM9Q9NXL9 1143 aa8.63□□□□□ -1.03
SYNE1-213ENST00000448038 MROH5Q6ZUA9 1318 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 ZBTB43O43298 467 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 STX6O43752 255 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 IFIT1BQ5T764 474 aaKnown RBP8.62□□□□□ -1.03
SYNE1-213ENST00000448038 Q6ZUG5 572 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 CPSF1Q10570 1443 aaKnown RBP8.62□□□□□ -1.03
SYNE1-213ENST00000448038 CCDC194A0A1B0GVG4 234 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 SMC2O95347 1197 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 PCCAP05165 728 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-213ENST00000448038 KRT27Q7Z3Y8 459 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 PDILTQ8N807 584 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 HELLSQ9NRZ9 838 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 MAGEC2Q9UBF1 373 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-213ENST00000448038 AOX1Q06278 1338 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 TMEM132AQ24JP5 1023 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 R3HCC1Q9Y3T6 440 aaKnown RBP8.62□□□□□ -1.03
SYNE1-213ENST00000448038 MBD4O95243 580 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms