RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 MKRN1Q9UHC7 482 aaKnown RBP22.4■■□□□ 1.18
HMGA1-205ENST00000447654 MYCNP04198 464 aaPredicted RBP22.39■■□□□ 1.18
HMGA1-205ENST00000447654 ARHGEF25Q86VW2 580 aa22.39■■□□□ 1.18
HMGA1-205ENST00000447654 MSL3Q8N5Y2 521 aaKnown RBP22.39■■□□□ 1.18
HMGA1-205ENST00000447654 KCNH5Q8NCM2 988 aa22.39■■□□□ 1.18
HMGA1-205ENST00000447654 AXIN2Q9Y2T1 843 aa22.39■■□□□ 1.18
HMGA1-205ENST00000447654 LIG1P18858 919 aa22.39■■□□□ 1.17
HMGA1-205ENST00000447654 IQCB1Q15051 598 aa22.39■■□□□ 1.17
HMGA1-205ENST00000447654 TAF7Q15545 349 aaPredicted RBP22.39■■□□□ 1.17
HMGA1-205ENST00000447654 SLC4A10Q6U841 1118 aa22.39■■□□□ 1.17
HMGA1-205ENST00000447654 TTC6Q86TZ1 520 aa22.39■■□□□ 1.17
HMGA1-205ENST00000447654 NRDCO43847 1150 aa22.38■■□□□ 1.17
HMGA1-205ENST00000447654 PACS2Q86VP3 889 aa22.38■■□□□ 1.17
HMGA1-205ENST00000447654 DDX17Q92841 729 aaKnown RBP22.38■■□□□ 1.17
HMGA1-205ENST00000447654 ADAM21Q9UKJ8 722 aa22.38■■□□□ 1.17
HMGA1-205ENST00000447654 NPHP1O15259 732 aa22.38■■□□□ 1.17
HMGA1-205ENST00000447654 TADA3O75528 432 aa22.38■■□□□ 1.17
HMGA1-205ENST00000447654 TSGA10IPQ3SY00 556 aa22.38■■□□□ 1.17
HMGA1-205ENST00000447654 TRMT1Q9NXH9 659 aaKnown RBP22.38■■□□□ 1.17
HMGA1-205ENST00000447654 DACT1Q9NYF0 836 aa22.38■■□□□ 1.17
HMGA1-205ENST00000447654 C1orf167Q5SNV9 1468 aa22.37■■□□□ 1.17
HMGA1-205ENST00000447654 TTC41PQ6P2S7 1318 aa22.37■■□□□ 1.17
HMGA1-205ENST00000447654 TRPM3Q9HCF6 1732 aaPredicted RBP22.37■■□□□ 1.17
HMGA1-205ENST00000447654 CT47A1Q5JQC4 288 aaPredicted RBP22.37■■□□□ 1.17
HMGA1-205ENST00000447654 JAKMIP3Q5VZ66 844 aa22.37■■□□□ 1.17
HMGA1-205ENST00000447654 MCTP2Q6DN12 878 aa22.37■■□□□ 1.17
HMGA1-205ENST00000447654 CC2D1AQ6P1N0 951 aaPredicted RBP22.37■■□□□ 1.17
HMGA1-205ENST00000447654 CCDC150Q8NCX0 1101 aa22.37■■□□□ 1.17
HMGA1-205ENST00000447654 PPP1R13BQ96KQ4 1090 aa22.37■■□□□ 1.17
HMGA1-205ENST00000447654 STAP2Q9UGK3 403 aa22.37■■□□□ 1.17
HMGA1-205ENST00000447654 CEMIPQ8WUJ3 1361 aa22.37■■□□□ 1.17
HMGA1-205ENST00000447654 PHRF1Q9P1Y6 1649 aaKnown RBP22.37■■□□□ 1.17
HMGA1-205ENST00000447654 CAMK4Q16566 473 aa22.36■■□□□ 1.17
HMGA1-205ENST00000447654 KRT28Q7Z3Y7 464 aa22.36■■□□□ 1.17
HMGA1-205ENST00000447654 GPR161Q8N6U8 529 aaKnown RBP22.36■■□□□ 1.17
HMGA1-205ENST00000447654 SLIT3O75094 1523 aa22.36■■□□□ 1.17
HMGA1-205ENST00000447654 GJB2P29033 226 aa22.36■■□□□ 1.17
HMGA1-205ENST00000447654 AK2P54819 239 aa22.36■■□□□ 1.17
HMGA1-205ENST00000447654 CORO7P57737 925 aa22.36■■□□□ 1.17
HMGA1-205ENST00000447654 CKAP2LQ8IYA6 745 aa22.36■■□□□ 1.17
HMGA1-205ENST00000447654 CARD10Q9BWT7 1032 aa22.36■■□□□ 1.17
HMGA1-205ENST00000447654 MED4Q9NPJ6 270 aa22.36■■□□□ 1.17
HMGA1-205ENST00000447654 FAM208AQ9UK61 1670 aaKnown RBP22.36■■□□□ 1.17
HMGA1-205ENST00000447654 GOLGA6L4A6NEF3 574 aa22.35■■□□□ 1.17
HMGA1-205ENST00000447654 FLIIQ13045 1269 aa22.35■■□□□ 1.17
HMGA1-205ENST00000447654 RUFY3Q7L099 469 aa22.35■■□□□ 1.17
HMGA1-205ENST00000447654 DRC1Q96MC2 740 aa22.35■■□□□ 1.17
HMGA1-205ENST00000447654 DNAJC25Q9H1X3 360 aa22.35■■□□□ 1.17
HMGA1-205ENST00000447654 DNAI1Q9UI46 699 aa22.35■■□□□ 1.17
HMGA1-205ENST00000447654 CTAGE5O15320 804 aa22.35■■□□□ 1.17
HMGA1-205ENST00000447654 KCNQ3O43525 872 aa22.35■■□□□ 1.17
HMGA1-205ENST00000447654 PDCP20941 246 aa22.35■■□□□ 1.17
HMGA1-205ENST00000447654 LRRFIP1Q32MZ4 808 aaKnown RBP22.35■■□□□ 1.17
HMGA1-205ENST00000447654 TPRNQ4KMQ1 711 aa22.35■■□□□ 1.17
HMGA1-205ENST00000447654 MMS22LQ6ZRQ5 1243 aa22.35■■□□□ 1.17
HMGA1-205ENST00000447654 C19orf44Q9H6X5 657 aa22.35■■□□□ 1.17
HMGA1-205ENST00000447654 ARFGAP3Q9NP61 516 aa22.35■■□□□ 1.17
HMGA1-205ENST00000447654 LMAN1P49257 510 aa22.34■■□□□ 1.17
HMGA1-205ENST00000447654 ETF1P62495 437 aaKnown RBP22.34■■□□□ 1.17
HMGA1-205ENST00000447654 E4F1Q66K89 784 aaPredicted RBP22.34■■□□□ 1.17
HMGA1-205ENST00000447654 STRCP1A6NGW2 1772 aa22.34■■□□□ 1.17
HMGA1-205ENST00000447654 EIF3CLB5ME19 914 aaKnown RBP22.33■■□□□ 1.17
HMGA1-205ENST00000447654 EIF3CQ99613 913 aaKnown RBP22.33■■□□□ 1.17
HMGA1-205ENST00000447654 CXorf56Q9H5V9 222 aa22.33■■□□□ 1.17
HMGA1-205ENST00000447654 SASH3O75995 380 aa22.33■■□□□ 1.16
HMGA1-205ENST00000447654 ARID5BQ14865 1188 aa22.33■■□□□ 1.16
HMGA1-205ENST00000447654 STK31Q9BXU1 1019 aa22.33■■□□□ 1.16
HMGA1-205ENST00000447654 PXDNQ92626 1479 aa22.33■■□□□ 1.16
HMGA1-205ENST00000447654 CCDC30Q5VVM6 783 aa22.32■■□□□ 1.16
HMGA1-205ENST00000447654 SNX14Q9Y5W7 946 aa22.32■■□□□ 1.16
HMGA1-205ENST00000447654 STX1AQ16623 288 aa22.32■■□□□ 1.16
HMGA1-205ENST00000447654 MPRIPQ6WCQ1 1025 aa22.32■■□□□ 1.16
HMGA1-205ENST00000447654 EFCAB13Q8IY85 973 aa22.32■■□□□ 1.16
HMGA1-205ENST00000447654 MED1Q15648 1581 aaPredicted RBP22.31■■□□□ 1.16
HMGA1-205ENST00000447654 CCDC196A0A1B0GTZ2 297 aa22.31■■□□□ 1.16
HMGA1-205ENST00000447654 APBB1O00213 710 aa22.31■■□□□ 1.16
HMGA1-205ENST00000447654 SATB1Q01826 763 aa22.31■■□□□ 1.16
HMGA1-205ENST00000447654 LRRN4CLQ8ND94 238 aa22.31■■□□□ 1.16
HMGA1-205ENST00000447654 ANKRD24Q8TF21 1146 aa22.31■■□□□ 1.16
HMGA1-205ENST00000447654 FAM107BQ9H098 131 aa22.31■■□□□ 1.16
HMGA1-205ENST00000447654 ZRSR1Q15695 479 aaKnown RBP22.31■■□□□ 1.16
HMGA1-205ENST00000447654 GPATCH11Q8N954 259 aa22.31■■□□□ 1.16
HMGA1-205ENST00000447654 TACO1Q9BSH4 297 aaKnown RBP22.31■■□□□ 1.16
HMGA1-205ENST00000447654 ZSCAN16Q9H4T2 348 aaPredicted RBP22.31■■□□□ 1.16
HMGA1-205ENST00000447654 PHAXQ9H814 394 aaKnown RBP22.31■■□□□ 1.16
HMGA1-205ENST00000447654 ZCCHC17Q9NP64 241 aaKnown RBP22.31■■□□□ 1.16
HMGA1-205ENST00000447654 TOMM22Q9NS69 142 aa22.31■■□□□ 1.16
HMGA1-205ENST00000447654 TMEM94Q12767 1356 aa22.3■■□□□ 1.16
HMGA1-205ENST00000447654 VPS53Q5VIR6 699 aa22.3■■□□□ 1.16
HMGA1-205ENST00000447654 FUT8Q9BYC5 575 aa22.3■■□□□ 1.16
HMGA1-205ENST00000447654 GIGYF1O75420 1035 aaPredicted RBP22.29■■□□□ 1.16
HMGA1-205ENST00000447654 ZC3H6P61129 1189 aaKnown RBP22.29■■□□□ 1.16
HMGA1-205ENST00000447654 ZNF530Q6P9A1 599 aaPredicted RBP22.29■■□□□ 1.16
HMGA1-205ENST00000447654 RGPD5Q99666 1765 aa22.29■■□□□ 1.16
HMGA1-205ENST00000447654 ATP6V1AP38606 617 aa22.29■■□□□ 1.16
HMGA1-205ENST00000447654 CCT4P50991 539 aaKnown RBP22.29■■□□□ 1.16
HMGA1-205ENST00000447654 EIF4A1P60842 406 aaKnown RBP22.29■■□□□ 1.16
HMGA1-205ENST00000447654 BABAM1Q9NWV8 329 aa22.29■■□□□ 1.16
HMGA1-205ENST00000447654 HYPKQ9NX55 129 aa22.29■■□□□ 1.16
HMGA1-205ENST00000447654 USP16Q9Y5T5 823 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms