RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 TAF3Q5VWG9 929 aa10.18□□□□□ -0.78
HPS4-206ENST00000439453 ATP6V1DQ9Y5K8 247 aa10.18□□□□□ -0.78
HPS4-206ENST00000439453 SLC4A2P04920 1241 aa10.18□□□□□ -0.78
HPS4-206ENST00000439453 SLC4A10Q6U841 1118 aa10.18□□□□□ -0.78
HPS4-206ENST00000439453 ZNF771Q7L3S4 317 aaPredicted RBP10.18□□□□□ -0.78
HPS4-206ENST00000439453 DLEC1Q9Y238 1755 aa10.18□□□□□ -0.78
HPS4-206ENST00000439453 SYCP1Q15431 976 aa10.17□□□□□ -0.78
HPS4-206ENST00000439453 USP16Q9Y5T5 823 aa10.17□□□□□ -0.78
HPS4-206ENST00000439453 CACNA1FO60840 1977 aa10.17□□□□□ -0.78
HPS4-206ENST00000439453 EPB41L2O43491 1005 aaKnown RBP10.17□□□□□ -0.78
HPS4-206ENST00000439453 GNAI2P04899 355 aa10.17□□□□□ -0.78
HPS4-206ENST00000439453 PTGS1P23219 599 aa10.17□□□□□ -0.78
HPS4-206ENST00000439453 CCT4P50991 539 aaKnown RBP10.17□□□□□ -0.78
HPS4-206ENST00000439453 LRP10Q7Z4F1 713 aa10.17□□□□□ -0.78
HPS4-206ENST00000439453 BABAM1Q9NWV8 329 aa10.17□□□□□ -0.78
HPS4-206ENST00000439453 ZBTB1Q9Y2K1 713 aa10.17□□□□□ -0.78
HPS4-206ENST00000439453 CCDC192P0DO97 292 aa10.17□□□□□ -0.78
HPS4-206ENST00000439453 FMNL2Q96PY5 1086 aa10.17□□□□□ -0.78
HPS4-206ENST00000439453 STAP2Q9UGK3 403 aa10.17□□□□□ -0.78
HPS4-206ENST00000439453 CTNNA3Q9UI47 895 aa10.17□□□□□ -0.78
HPS4-206ENST00000439453 F6X3S4 739 aa10.16□□□□□ -0.78
HPS4-206ENST00000439453 GIGYF1O75420 1035 aaPredicted RBP10.16□□□□□ -0.78
HPS4-206ENST00000439453 IL25Q9H293 177 aa10.16□□□□□ -0.78
HPS4-206ENST00000439453 SMC3Q9UQE7 1217 aa10.16□□□□□ -0.78
HPS4-206ENST00000439453 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.16□□□□□ -0.78
HPS4-206ENST00000439453 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.16□□□□□ -0.78
HPS4-206ENST00000439453 GNPATO15228 680 aa10.16□□□□□ -0.78
HPS4-206ENST00000439453 GABPB1Q06547 395 aaPredicted RBP10.16□□□□□ -0.78
HPS4-206ENST00000439453 TFCP2L1Q9NZI6 479 aa10.16□□□□□ -0.78
HPS4-206ENST00000439453 N4BP2Q86UW6 1770 aaPredicted RBP10.16□□□□□ -0.78
HPS4-206ENST00000439453 SMTNL1A8MU46 457 aa10.16□□□□□ -0.78
HPS4-206ENST00000439453 NBPF26B4DH59 902 aa10.16□□□□□ -0.78
HPS4-206ENST00000439453 RPS6KA4O75676 772 aa10.16□□□□□ -0.78
HPS4-206ENST00000439453 NBPF10Q6P3W6 841 aaKnown RBP10.16□□□□□ -0.78
HPS4-206ENST00000439453 NBPF15Q8N660 670 aa10.16□□□□□ -0.78
HPS4-206ENST00000439453 TTC14Q96N46 770 aa10.16□□□□□ -0.78
HPS4-206ENST00000439453 ZBTB7AO95365 584 aa10.15□□□□□ -0.78
HPS4-206ENST00000439453 AK2P54819 239 aa10.15□□□□□ -0.78
HPS4-206ENST00000439453 DNM1Q05193 864 aaKnown RBP10.15□□□□□ -0.78
HPS4-206ENST00000439453 G2E3Q7L622 706 aa10.15□□□□□ -0.78
HPS4-206ENST00000439453 TTC5Q8N0Z6 440 aa10.15□□□□□ -0.78
HPS4-206ENST00000439453 BBXQ8WY36 941 aaPredicted RBP10.15□□□□□ -0.78
HPS4-206ENST00000439453 AK7Q96M32 723 aa10.15□□□□□ -0.78
HPS4-206ENST00000439453 LIMCH1Q9UPQ0 1083 aa10.15□□□□□ -0.78
HPS4-206ENST00000439453 COL15A1P39059 1388 aa10.15□□□□□ -0.78
HPS4-206ENST00000439453 COL11A2P13942 1736 aaPredicted RBP10.15□□□□□ -0.78
HPS4-206ENST00000439453 RUFY3Q7L099 469 aa10.15□□□□□ -0.78
HPS4-206ENST00000439453 LARP6Q9BRS8 491 aaKnown RBP10.15□□□□□ -0.78
HPS4-206ENST00000439453 CCDC87Q9NVE4 849 aa10.15□□□□□ -0.78
HPS4-206ENST00000439453 FAM200AQ8TCP9 573 aa10.15□□□□□ -0.78
HPS4-206ENST00000439453 ARHGEF1Q92888 912 aaKnown RBP10.15□□□□□ -0.78
HPS4-206ENST00000439453 CGNQ9P2M7 1197 aaKnown RBP10.15□□□□□ -0.78
HPS4-206ENST00000439453 SNX14Q9Y5W7 946 aa10.15□□□□□ -0.78
HPS4-206ENST00000439453 EIF5P55010 431 aaKnown RBP10.14□□□□□ -0.79
HPS4-206ENST00000439453 PDIA6Q15084 440 aa10.14□□□□□ -0.79
HPS4-206ENST00000439453 C16orf45Q96MC5 204 aaPredicted RBP10.14□□□□□ -0.79
HPS4-206ENST00000439453 PNMA6EA0A0J9YXQ4 647 aa10.14□□□□□ -0.79
HPS4-206ENST00000439453 A1BGP04217 495 aa10.14□□□□□ -0.79
HPS4-206ENST00000439453 GTF2E1P29083 439 aaPredicted RBP10.14□□□□□ -0.79
HPS4-206ENST00000439453 CCDC186Q7Z3E2 898 aa10.14□□□□□ -0.79
HPS4-206ENST00000439453 MTFR1LQ9H019 292 aa10.14□□□□□ -0.79
HPS4-206ENST00000439453 TSPYL4Q9UJ04 414 aa10.14□□□□□ -0.79
HPS4-206ENST00000439453 DDX41Q9UJV9 622 aaKnown RBP10.14□□□□□ -0.79
HPS4-206ENST00000439453 PIP4K2AP48426 406 aaPredicted RBP10.14□□□□□ -0.79
HPS4-206ENST00000439453 ATP8B2P98198 1209 aa10.14□□□□□ -0.79
HPS4-206ENST00000439453 AOX1Q06278 1338 aa10.14□□□□□ -0.79
HPS4-206ENST00000439453 RAD50Q92878 1312 aa10.14□□□□□ -0.79
HPS4-206ENST00000439453 USP42Q9H9J4 1324 aaKnown RBP10.14□□□□□ -0.79
HPS4-206ENST00000439453 LAMB2P55268 1798 aa10.14□□□□□ -0.79
HPS4-206ENST00000439453 SNRPA1P09661 255 aaKnown RBP10.14□□□□□ -0.79
HPS4-206ENST00000439453 TNNT1P13805 278 aa10.14□□□□□ -0.79
HPS4-206ENST00000439453 LRMPQ12912 555 aa10.14□□□□□ -0.79
HPS4-206ENST00000439453 MTMR6Q9Y217 621 aa10.14□□□□□ -0.79
HPS4-206ENST00000439453 SLFN14P0C7P3 912 aa10.13□□□□□ -0.79
HPS4-206ENST00000439453 GYS1P13807 737 aa10.13□□□□□ -0.79
HPS4-206ENST00000439453 GJB2P29033 226 aa10.13□□□□□ -0.79
HPS4-206ENST00000439453 DRC7Q8IY82 874 aa10.13□□□□□ -0.79
HPS4-206ENST00000439453 SRP68Q9UHB9 627 aaKnown RBP10.13□□□□□ -0.79
HPS4-206ENST00000439453 MRVI1Q9Y6F6 885 aa10.13□□□□□ -0.79
HPS4-206ENST00000439453 MORC2Q9Y6X9 1032 aaPredicted RBP10.13□□□□□ -0.79
HPS4-206ENST00000439453 TNRC6CQ9HCJ0 1690 aaKnown RBP10.13□□□□□ -0.79
HPS4-206ENST00000439453 ADRA2BP18089 450 aa10.13□□□□□ -0.79
HPS4-206ENST00000439453 TYRO3Q06418 890 aa10.13□□□□□ -0.79
HPS4-206ENST00000439453 NAA30Q147X3 362 aaPredicted RBP10.13□□□□□ -0.79
HPS4-206ENST00000439453 MAP3K11Q16584 847 aa10.13□□□□□ -0.79
HPS4-206ENST00000439453 LUZP1Q86V48 1076 aa10.13□□□□□ -0.79
HPS4-206ENST00000439453 RASEFQ8IZ41 740 aa10.13□□□□□ -0.79
HPS4-206ENST00000439453 PAXBP1Q9Y5B6 917 aa10.13□□□□□ -0.79
HPS4-206ENST00000439453 SGSM2O43147 1006 aa10.12□□□□□ -0.79
HPS4-206ENST00000439453 GNAI3P08754 354 aa10.12□□□□□ -0.79
HPS4-206ENST00000439453 CCDC112Q8NEF3 446 aa10.12□□□□□ -0.79
HPS4-206ENST00000439453 SLC16A10Q8TF71 515 aa10.12□□□□□ -0.79
HPS4-206ENST00000439453 TMEM51Q9NW97 253 aa10.12□□□□□ -0.79
HPS4-206ENST00000439453 ATF5Q9Y2D1 282 aaPredicted RBP10.12□□□□□ -0.79
HPS4-206ENST00000439453 RTCBQ9Y3I0 505 aaKnown RBP10.12□□□□□ -0.79
HPS4-206ENST00000439453 LARGE1O95461 756 aa10.12□□□□□ -0.79
HPS4-206ENST00000439453 CCDC83Q8IWF9 413 aa10.12□□□□□ -0.79
HPS4-206ENST00000439453 LSG1Q9H089 658 aaKnown RBP10.12□□□□□ -0.79
HPS4-206ENST00000439453 NUP62CLQ9H1M0 184 aa10.12□□□□□ -0.79
HPS4-206ENST00000439453 NRBP1Q9UHY1 535 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms