RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ZNF500O60304 480 aaPredicted RBP8.14□□□□□ -1.11
VPS53-204ENST00000437048 LRCH2Q5VUJ6 765 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 AOX1Q06278 1338 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 AKR1B10O60218 316 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 HSPA8P11142 646 aaKnown RBP8.14□□□□□ -1.11
VPS53-204ENST00000437048 FERMT2Q96AC1 680 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 RSPH14Q9UHP6 348 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 GOLGA6CA6NDK9 693 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 GOLGA6BA6NDN3 693 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 GOLGA6DP0CG33 693 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 ZSCAN22P10073 491 aaPredicted RBP8.14□□□□□ -1.11
VPS53-204ENST00000437048 ZBTB16Q05516 673 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 HYPKQ9NX55 129 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 GOLGA6AQ9NYA3 693 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 TTC21BQ7Z4L5 1316 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 MLECQ14165 292 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 CCDC68Q9H2F9 335 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 NAA25Q14CX7 972 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 LGSNQ5TDP6 509 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 LLPHQ9BRT6 129 aaKnown RBP8.13□□□□□ -1.11
VPS53-204ENST00000437048 SSX2IPQ9Y2D8 614 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 CEP104O60308 925 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 ZSCAN23Q3MJ62 389 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 RNF10Q8N5U6 811 aaKnown RBP8.13□□□□□ -1.11
VPS53-204ENST00000437048 ATRIPQ8WXE1 791 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 NUF2Q9BZD4 464 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 HOMER3Q9NSC5 361 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.13□□□□□ -1.11
VPS53-204ENST00000437048 CEP126Q9P2H0 1117 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 RPRD2Q5VT52 1461 aaKnown RBP8.13□□□□□ -1.11
VPS53-204ENST00000437048 CEP57Q86XR8 500 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 CALR3Q96L12 384 aaKnown RBP8.13□□□□□ -1.11
VPS53-204ENST00000437048 NEDD9Q14511 834 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 CCDC62Q6P9F0 684 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 PAF1Q8N7H5 531 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 C9orf84Q5VXU9 1444 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 HIP1RO75146 1068 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 BRD2P25440 801 aaKnown RBP8.13□□□□□ -1.11
VPS53-204ENST00000437048 TBC1D2Q9BYX2 928 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 CCDC113Q9H0I3 377 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 MRPS27Q92552 414 aaKnown RBP8.13□□□□□ -1.11
VPS53-204ENST00000437048 RAI14Q9P0K7 980 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 TRAK1Q9UPV9 953 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 NDUFAB1O14561 156 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 PRC1O43663 620 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 IGSF3O75054 1194 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 PPP1R2P3Q6NXS1 205 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 GGT6Q6P531 493 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 CCDC84Q86UT8 332 aaPredicted RBP8.13□□□□□ -1.11
VPS53-204ENST00000437048 SMARCC2Q8TAQ2 1214 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 NEUROD6Q96NK8 337 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 SATB2Q9UPW6 733 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 TTC41PQ6P2S7 1318 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 PTPN23Q9H3S7 1636 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 PCK1P35558 622 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 RAB3GAP1Q15042 981 aa8.13□□□□□ -1.11
VPS53-204ENST00000437048 MPHOSPH6Q99547 160 aaKnown RBP8.13□□□□□ -1.11
VPS53-204ENST00000437048 UBASH3AP57075 661 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 SSH2Q76I76 1423 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 CCDC152Q4G0S7 254 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 TMED8Q6PL24 325 aaPredicted RBP8.12□□□□□ -1.11
VPS53-204ENST00000437048 TBC1D31Q96DN5 1066 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 PAK2Q13177 524 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 SRGAP1Q7Z6B7 1085 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 WDR97A6NE52 1622 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 UHRF1BP1Q6BDS2 1440 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 EVCP57679 992 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 PFDN4Q9NQP4 134 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 PTPRGP23470 1445 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 CLNS1AP54105 237 aaKnown RBP8.12□□□□□ -1.11
VPS53-204ENST00000437048 TTC39AQ5SRH9 613 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 CWC27Q6UX04 472 aaKnown RBP8.12□□□□□ -1.11
VPS53-204ENST00000437048 MMRN2Q9H8L6 949 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 DNAI1Q9UI46 699 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 KIF14Q15058 1648 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 HMGXB3Q12766 1538 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 RUSC2Q8N2Y8 1516 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 ATAD2BQ9ULI0 1458 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 APBB1IPQ7Z5R6 666 aaPredicted RBP8.12□□□□□ -1.11
VPS53-204ENST00000437048 CALM1P0DP23 149 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 CALM2P0DP24 149 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 CALM3P0DP25 149 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 TMTC1Q8IUR5 882 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 SYCE1Q8N0S2 351 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 ADAMTS8Q9UP79 889 aa8.12□□□□□ -1.11
VPS53-204ENST00000437048 MRGBPQ9NV56 204 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 CCDC194A0A1B0GVG4 234 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 FAM177BA6PVY3 158 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 NFE2L2Q16236 605 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 NBPF10Q6P3W6 841 aaKnown RBP8.11□□□□□ -1.11
VPS53-204ENST00000437048 MIER3Q7Z3K6 550 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 FAM177A1Q8N128 213 aaPredicted RBP8.11□□□□□ -1.11
VPS53-204ENST00000437048 HDGFL1Q5TGJ6 251 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 TROQ12816 1431 aaPredicted RBP8.11□□□□□ -1.11
VPS53-204ENST00000437048 UBA7P41226 1012 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 XPCQ01831 940 aaPredicted RBP8.11□□□□□ -1.11
VPS53-204ENST00000437048 SLC4A8Q2Y0W8 1093 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 RUBCNQ92622 972 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 RAB17Q9H0T7 212 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 RNF14Q9UBS8 474 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms