RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 C4AP0C0L4 1744 aa25.53■■□□□ 1.68
PTPRF-207ENST00000436724 GOLIM4O00461 696 aa25.53■■□□□ 1.68
PTPRF-207ENST00000436724 MCCP23508 829 aa25.53■■□□□ 1.68
PTPRF-207ENST00000436724 PTH1RQ03431 593 aa25.53■■□□□ 1.68
PTPRF-207ENST00000436724 KIAA1211Q6ZU35 1233 aa25.53■■□□□ 1.68
PTPRF-207ENST00000436724 LRP5O75197 1615 aa25.53■■□□□ 1.68
PTPRF-207ENST00000436724 COL4A1P02462 1669 aa25.52■■□□□ 1.68
PTPRF-207ENST00000436724 HIP1O00291 1037 aa25.52■■□□□ 1.68
PTPRF-207ENST00000436724 IFIT1P09914 478 aaKnown RBP25.52■■□□□ 1.68
PTPRF-207ENST00000436724 GTF2E1P29083 439 aaPredicted RBP25.52■■□□□ 1.68
PTPRF-207ENST00000436724 CCDC24Q8N4L8 307 aa25.52■■□□□ 1.68
PTPRF-207ENST00000436724 ABCC12Q96J65 1359 aa25.52■■□□□ 1.68
PTPRF-207ENST00000436724 RGL2O15211 777 aa25.52■■□□□ 1.68
PTPRF-207ENST00000436724 PDE8BO95263 885 aa25.52■■□□□ 1.68
PTPRF-207ENST00000436724 HSPA4P34932 840 aa25.52■■□□□ 1.68
PTPRF-207ENST00000436724 PAG1Q9NWQ8 432 aa25.52■■□□□ 1.68
PTPRF-207ENST00000436724 HSP90B1P14625 803 aaKnown RBP25.51■■□□□ 1.67
PTPRF-207ENST00000436724 MPHOSPH8Q99549 860 aa25.51■■□□□ 1.67
PTPRF-207ENST00000436724 ANTXR1Q9H6X2 564 aa25.51■■□□□ 1.67
PTPRF-207ENST00000436724 CCDC158Q5M9N0 1113 aa25.51■■□□□ 1.67
PTPRF-207ENST00000436724 SPEF2Q9C093 1822 aa25.5■■□□□ 1.67
PTPRF-207ENST00000436724 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.5■■□□□ 1.67
PTPRF-207ENST00000436724 SNAP23O00161 211 aa25.5■■□□□ 1.67
PTPRF-207ENST00000436724 FRAT2O75474 233 aaPredicted RBP25.5■■□□□ 1.67
PTPRF-207ENST00000436724 SCARF1Q14162 830 aa25.5■■□□□ 1.67
PTPRF-207ENST00000436724 TTC39AQ5SRH9 613 aa25.5■■□□□ 1.67
PTPRF-207ENST00000436724 NBPF5PQ86XG9 351 aaPredicted RBP25.5■■□□□ 1.67
PTPRF-207ENST00000436724 SNRKQ9NRH2 765 aa25.5■■□□□ 1.67
PTPRF-207ENST00000436724 K7ELQ4 463 aaPredicted RBP25.49■■□□□ 1.67
PTPRF-207ENST00000436724 PROM2Q8N271 834 aa25.49■■□□□ 1.67
PTPRF-207ENST00000436724 KBTBD3Q8NAB2 608 aa25.49■■□□□ 1.67
PTPRF-207ENST00000436724 EPB41L2O43491 1005 aaKnown RBP25.49■■□□□ 1.67
PTPRF-207ENST00000436724 TAF5LO75529 589 aa25.49■■□□□ 1.67
PTPRF-207ENST00000436724 SLFNL1Q499Z3 407 aa25.49■■□□□ 1.67
PTPRF-207ENST00000436724 ZNF589Q86UQ0 364 aaPredicted RBP25.49■■□□□ 1.67
PTPRF-207ENST00000436724 RTL9Q8NET4 1388 aa25.48■■□□□ 1.67
PTPRF-207ENST00000436724 FKBP4Q02790 459 aaKnown RBP eCLIP25.48■■□□□ 1.671e-7■■■■■ 44.7
PTPRF-207ENST00000436724 SLC27A3Q5K4L6 730 aa25.48■■□□□ 1.67
PTPRF-207ENST00000436724 TAF1P21675 1872 aa25.48■■□□□ 1.67
PTPRF-207ENST00000436724 MROH5Q6ZUA9 1318 aa25.48■■□□□ 1.67
PTPRF-207ENST00000436724 ANAPC15P60006 121 aa25.48■■□□□ 1.67
PTPRF-207ENST00000436724 PI16Q6UXB8 463 aa25.48■■□□□ 1.67
PTPRF-207ENST00000436724 CASZ1Q86V15 1759 aa25.48■■□□□ 1.67
PTPRF-207ENST00000436724 SEC62Q99442 399 aaKnown RBP25.47■■□□□ 1.67
PTPRF-207ENST00000436724 CCDC171Q6TFL3 1326 aa25.47■■□□□ 1.67
PTPRF-207ENST00000436724 COL24A1Q17RW2 1714 aa25.47■■□□□ 1.67
PTPRF-207ENST00000436724 UBR3Q6ZT12 1888 aa25.47■■□□□ 1.67
PTPRF-207ENST00000436724 IGHMBP2P38935 993 aaKnown RBP25.46■■□□□ 1.67
PTPRF-207ENST00000436724 NEK4P51957 841 aa25.46■■□□□ 1.67
PTPRF-207ENST00000436724 GSE1Q14687 1217 aa25.46■■□□□ 1.67
PTPRF-207ENST00000436724 RASEFQ8IZ41 740 aa25.46■■□□□ 1.67
PTPRF-207ENST00000436724 NYXQ9GZU5 481 aa25.46■■□□□ 1.67
PTPRF-207ENST00000436724 MED23Q9ULK4 1368 aa25.46■■□□□ 1.67
PTPRF-207ENST00000436724 RXRBP28702 533 aa25.46■■□□□ 1.67
PTPRF-207ENST00000436724 SF3B3Q15393 1217 aaKnown RBP25.46■■□□□ 1.67
PTPRF-207ENST00000436724 TXNRD1Q16881 649 aa25.46■■□□□ 1.67
PTPRF-207ENST00000436724 SLC10A5Q5PT55 438 aa25.45■■□□□ 1.67
PTPRF-207ENST00000436724 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.45■■□□□ 1.67
PTPRF-207ENST00000436724 FOXD4L1Q9NU39 408 aa25.45■■□□□ 1.67
PTPRF-207ENST00000436724 ST18O60284 1047 aa25.45■■□□□ 1.66
PTPRF-207ENST00000436724 PUM3Q15397 648 aaKnown RBP25.45■■□□□ 1.66
PTPRF-207ENST00000436724 UPF3BQ9BZI7 483 aaKnown RBP25.45■■□□□ 1.66
PTPRF-207ENST00000436724 SNX14Q9Y5W7 946 aa25.45■■□□□ 1.66
PTPRF-207ENST00000436724 FGFR2P21802 821 aa25.44■■□□□ 1.66
PTPRF-207ENST00000436724 TPTE2Q6XPS3 522 aa25.44■■□□□ 1.66
PTPRF-207ENST00000436724 CCDC129Q6ZRS4 1044 aa25.44■■□□□ 1.66
PTPRF-207ENST00000436724 ZAP70P43403 619 aa25.44■■□□□ 1.66
PTPRF-207ENST00000436724 NFIXQ14938 502 aa25.44■■□□□ 1.66
PTPRF-207ENST00000436724 MCAMP43121 646 aa25.43■■□□□ 1.66
PTPRF-207ENST00000436724 PRPF40BQ6NWY9 871 aaKnown RBP25.43■■□□□ 1.66
PTPRF-207ENST00000436724 LPIN2Q92539 896 aa25.43■■□□□ 1.66
PTPRF-207ENST00000436724 IL17RAQ96F46 866 aa25.43■■□□□ 1.66
PTPRF-207ENST00000436724 CDC5LQ99459 802 aaKnown RBP25.43■■□□□ 1.66
PTPRF-207ENST00000436724 RFX7Q2KHR2 1363 aa25.43■■□□□ 1.66
PTPRF-207ENST00000436724 ADRA2BP18089 450 aa25.42■■□□□ 1.66
PTPRF-207ENST00000436724 PHKA1P46020 1223 aa25.42■■□□□ 1.66
PTPRF-207ENST00000436724 MAP4K1Q92918 833 aa25.42■■□□□ 1.66
PTPRF-207ENST00000436724 RGS17Q9UGC6 210 aaPredicted RBP25.42■■□□□ 1.66
PTPRF-207ENST00000436724 CHRNDQ07001 517 aa25.42■■□□□ 1.66
PTPRF-207ENST00000436724 CCDC102BQ68D86 513 aa25.42■■□□□ 1.66
PTPRF-207ENST00000436724 RBM8AQ9Y5S9 174 aaKnown RBP25.42■■□□□ 1.66
PTPRF-207ENST00000436724 CELF1Q92879 486 aaKnown RBP25.41■■□□□ 1.66
PTPRF-207ENST00000436724 NLRP3Q96P20 1036 aa25.41■■□□□ 1.66
PTPRF-207ENST00000436724 NPHP1O15259 732 aa25.41■■□□□ 1.66
PTPRF-207ENST00000436724 APBA3O96018 575 aa25.41■■□□□ 1.66
PTPRF-207ENST00000436724 HSP90AA1P07900 732 aaKnown RBP25.41■■□□□ 1.66
PTPRF-207ENST00000436724 NECTIN1Q15223 517 aa25.41■■□□□ 1.66
PTPRF-207ENST00000436724 ANKRD18AQ8IVF6 992 aa25.41■■□□□ 1.66
PTPRF-207ENST00000436724 GYS1P13807 737 aa25.4■■□□□ 1.66
PTPRF-207ENST00000436724 KCNJ4P48050 445 aa25.4■■□□□ 1.66
PTPRF-207ENST00000436724 AKAP11Q9UKA4 1901 aa25.4■■□□□ 1.66
PTPRF-207ENST00000436724 MCMDC2Q4G0Z9 681 aa25.39■■□□□ 1.66
PTPRF-207ENST00000436724 CARMIL3Q8ND23 1372 aa25.39■■□□□ 1.66
PTPRF-207ENST00000436724 WTIPA6NIX2 430 aaPredicted RBP25.39■■□□□ 1.65
PTPRF-207ENST00000436724 SSFA2P28290 1259 aa25.39■■□□□ 1.65
PTPRF-207ENST00000436724 SLC5A1P13866 664 aa25.38■■□□□ 1.65
PTPRF-207ENST00000436724 NOL8Q76FK4 1167 aaKnown RBP25.38■■□□□ 1.65
PTPRF-207ENST00000436724 ADCK5Q3MIX3 580 aa25.37■■□□□ 1.65
PTPRF-207ENST00000436724 CREB3L3Q68CJ9 461 aa25.37■■□□□ 1.65
PTPRF-207ENST00000436724 POTEAQ6S8J7 498 aa25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms