RNA–Protein interactions for RNA: ENST00000431283.1

PTPN4-204, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 630 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-204ENST00000431283 DCAF11Q8TEB1 546 aa9.52□□□□□ -0.89
PTPN4-204ENST00000431283 PPP1R15AO75807 674 aaPredicted RBP9.51□□□□□ -0.89
PTPN4-204ENST00000431283 HOXD8P13378 290 aaPredicted RBP9.51□□□□□ -0.89
PTPN4-204ENST00000431283 RSPO4Q2I0M5 234 aaPredicted RBP9.51□□□□□ -0.89
PTPN4-204ENST00000431283 IL22RA1Q8N6P7 574 aa9.51□□□□□ -0.89
PTPN4-204ENST00000431283 RPLP1P05386 114 aaKnown RBP9.5□□□□□ -0.89
PTPN4-204ENST00000431283 C14orf37Q86TY3 774 aa9.5□□□□□ -0.89
PTPN4-204ENST00000431283 CACTIN-AS1Q8N1I8 211 aa9.5□□□□□ -0.89
PTPN4-204ENST00000431283 OR13H1Q8NG92 308 aa9.5□□□□□ -0.89
PTPN4-204ENST00000431283 SEPT3Q9UH03 358 aa9.5□□□□□ -0.89
PTPN4-204ENST00000431283 FAM177BA6PVY3 158 aa9.49□□□□□ -0.89
PTPN4-204ENST00000431283 FAM26DQ5JW98 314 aa9.49□□□□□ -0.89
PTPN4-204ENST00000431283 NKAPLQ5M9Q1 402 aa9.49□□□□□ -0.89
PTPN4-204ENST00000431283 IGF2-ASQ6U949 168 aa9.49□□□□□ -0.89
PTPN4-204ENST00000431283 SRA1Q9HD15 236 aaKnown RBP9.49□□□□□ -0.89
PTPN4-204ENST00000431283 SMNDC1O75940 238 aaKnown RBP eCLIP9.48□□□□□ -0.89
PTPN4-204ENST00000431283 MAP4K3Q8IVH8 894 aa9.48□□□□□ -0.89
PTPN4-204ENST00000431283 TP53INP1Q96A56 240 aa9.48□□□□□ -0.89
PTPN4-204ENST00000431283 MUC3BQ9H195 1237 aa9.48□□□□□ -0.89
PTPN4-204ENST00000431283 ABI2Q9NYB9 513 aaPredicted RBP9.48□□□□□ -0.89
PTPN4-204ENST00000431283 ZBTB39O15060 712 aa9.47□□□□□ -0.89
PTPN4-204ENST00000431283 DYRK3O43781 588 aa9.47□□□□□ -0.89
PTPN4-204ENST00000431283 ZMYM1Q5SVZ6 1142 aa9.47□□□□□ -0.89
PTPN4-204ENST00000431283 ZNF438Q7Z4V0 828 aa9.47□□□□□ -0.89
PTPN4-204ENST00000431283 HELQQ8TDG4 1101 aa9.47□□□□□ -0.89
PTPN4-204ENST00000431283 NUDT16Q96DE0 195 aaKnown RBP9.47□□□□□ -0.89
PTPN4-204ENST00000431283 MTMR7Q9Y216 660 aa9.47□□□□□ -0.89
PTPN4-204ENST00000431283 PDE12Q6L8Q7 609 aaKnown RBP9.46□□□□□ -0.9
PTPN4-204ENST00000431283 ILDR2Q71H61 639 aa9.46□□□□□ -0.9
PTPN4-204ENST00000431283 NCAPG2Q86XI2 1143 aa9.46□□□□□ -0.9
PTPN4-204ENST00000431283 SLAIN2Q9P270 581 aa9.46□□□□□ -0.9
PTPN4-204ENST00000431283 H2AFB1P0C5Y9 115 aa9.45□□□□□ -0.9
PTPN4-204ENST00000431283 H2AFB2P0C5Z0 115 aa9.45□□□□□ -0.9
PTPN4-204ENST00000431283 IREB2P48200 963 aaKnown RBP9.45□□□□□ -0.9
PTPN4-204ENST00000431283 DNM1Q05193 864 aaKnown RBP9.45□□□□□ -0.9
PTPN4-204ENST00000431283 AAMPQ13685 434 aa9.45□□□□□ -0.9
PTPN4-204ENST00000431283 NOM1Q5C9Z4 860 aaKnown RBP9.45□□□□□ -0.9
PTPN4-204ENST00000431283 CEP135Q66GS9 1140 aa9.45□□□□□ -0.9
PTPN4-204ENST00000431283 WFDC12Q8WWY7 111 aa9.45□□□□□ -0.9
PTPN4-204ENST00000431283 ELP3Q9H9T3 547 aa9.45□□□□□ -0.9
PTPN4-204ENST00000431283 TRIM33Q9UPN9 1127 aa9.45□□□□□ -0.9
PTPN4-204ENST00000431283 PPME1Q9Y570 386 aa9.45□□□□□ -0.9
PTPN4-204ENST00000431283 DEAF1O75398 565 aaPredicted RBP9.44□□□□□ -0.9
PTPN4-204ENST00000431283 ATCAYQ86WG3 371 aa9.44□□□□□ -0.9
PTPN4-204ENST00000431283 MRPL18Q9H0U6 180 aaKnown RBP9.44□□□□□ -0.9
PTPN4-204ENST00000431283 SCO2A0A1W2PP80 73 aa9.43□□□□□ -0.9
PTPN4-204ENST00000431283 DLL1O00548 723 aa9.43□□□□□ -0.9
PTPN4-204ENST00000431283 C8orf34Q49A92 452 aa9.43□□□□□ -0.9
PTPN4-204ENST00000431283 ALKBH2Q6NS38 261 aa9.43□□□□□ -0.9
PTPN4-204ENST00000431283 FAM117BQ6P1L5 589 aa9.43□□□□□ -0.9
PTPN4-204ENST00000431283 Q8N3U1 123 aa9.43□□□□□ -0.9
PTPN4-204ENST00000431283 GTF3C2Q8WUA4 911 aaPredicted RBP9.43□□□□□ -0.9
PTPN4-204ENST00000431283 EDEM1Q92611 657 aa9.43□□□□□ -0.9
PTPN4-204ENST00000431283 LACRTQ9GZZ8 138 aa9.43□□□□□ -0.9
PTPN4-204ENST00000431283 ATP11AP98196 1134 aa9.42□□□□□ -0.9
PTPN4-204ENST00000431283 PRSS36Q5K4E3 855 aa9.42□□□□□ -0.9
PTPN4-204ENST00000431283 AKTIPQ9H8T0 292 aa9.42□□□□□ -0.9
PTPN4-204ENST00000431283 ITGB7P26010 798 aa9.41□□□□□ -0.9
PTPN4-204ENST00000431283 NOS3P29474 1203 aa9.41□□□□□ -0.9
PTPN4-204ENST00000431283 CDC27P30260 824 aa9.41□□□□□ -0.9
PTPN4-204ENST00000431283 COL13A1Q5TAT6 717 aaPredicted RBP9.41□□□□□ -0.9
PTPN4-204ENST00000431283 SSFA2P28290 1259 aa9.4□□□□□ -0.9
PTPN4-204ENST00000431283 XP32Q5T750 250 aa9.4□□□□□ -0.9
PTPN4-204ENST00000431283 RASSF4Q9H2L5 321 aa9.4□□□□□ -0.9
PTPN4-204ENST00000431283 TMEM63CQ9P1W3 806 aa9.4□□□□□ -0.9
PTPN4-204ENST00000431283 TMEM88BA6NKF7 163 aa9.39□□□□□ -0.91
PTPN4-204ENST00000431283 LINC01387J3KSC0 135 aa9.39□□□□□ -0.91
PTPN4-204ENST00000431283 CYP2E1P05181 493 aaPredicted RBP9.39□□□□□ -0.91
PTPN4-204ENST00000431283 PTPRAP18433 802 aa9.39□□□□□ -0.91
PTPN4-204ENST00000431283 CES1P23141 567 aa9.39□□□□□ -0.91
PTPN4-204ENST00000431283 MPSTP25325 297 aa9.39□□□□□ -0.91
PTPN4-204ENST00000431283 MZF1P28698 734 aaPredicted RBP9.39□□□□□ -0.91
PTPN4-204ENST00000431283 EIF1AXP47813 144 aaKnown RBP9.39□□□□□ -0.91
PTPN4-204ENST00000431283 SETDB1Q15047 1291 aa9.39□□□□□ -0.91
PTPN4-204ENST00000431283 PMEPA1Q969W9 287 aa9.39□□□□□ -0.91
PTPN4-204ENST00000431283 PBX4Q9BYU1 374 aa9.39□□□□□ -0.91
PTPN4-204ENST00000431283 KIF4AO95239 1232 aa9.38□□□□□ -0.91
PTPN4-204ENST00000431283 PDGFAP04085 211 aa9.38□□□□□ -0.91
PTPN4-204ENST00000431283 CDC25BP30305 580 aa9.38□□□□□ -0.91
PTPN4-204ENST00000431283 KANSL3Q9P2N6 904 aa9.38□□□□□ -0.91
PTPN4-204ENST00000431283 FAM13AO94988 1023 aa9.37□□□□□ -0.91
PTPN4-204ENST00000431283 CABP4P57796 275 aa9.37□□□□□ -0.91
PTPN4-204ENST00000431283 B4GALNT3Q6L9W6 998 aa9.37□□□□□ -0.91
PTPN4-204ENST00000431283 TMEM130Q8N3G9 435 aa9.37□□□□□ -0.91
PTPN4-204ENST00000431283 F8W735 103 aaPredicted RBP9.36□□□□□ -0.91
PTPN4-204ENST00000431283 GLB1P16278 677 aa9.36□□□□□ -0.91
PTPN4-204ENST00000431283 USP5P45974 858 aa9.36□□□□□ -0.91
PTPN4-204ENST00000431283 MTMR3Q13615 1198 aa9.36□□□□□ -0.91
PTPN4-204ENST00000431283 TXNDC11Q6PKC3 985 aa9.36□□□□□ -0.91
PTPN4-204ENST00000431283 XKR5Q6UX68 686 aa9.36□□□□□ -0.91
PTPN4-204ENST00000431283 CEP120Q8N960 986 aa9.36□□□□□ -0.91
PTPN4-204ENST00000431283 SSBP4Q9BWG4 385 aaPredicted RBP9.36□□□□□ -0.91
PTPN4-204ENST00000431283 C1orf115Q9H7X2 142 aa9.36□□□□□ -0.91
PTPN4-204ENST00000431283 ALX3O95076 343 aa9.35□□□□□ -0.91
PTPN4-204ENST00000431283 ABL1P00519 1130 aa9.35□□□□□ -0.91
PTPN4-204ENST00000431283 CD68P34810 354 aaPredicted RBP9.35□□□□□ -0.91
PTPN4-204ENST00000431283 EHHADHQ08426 723 aa9.35□□□□□ -0.91
PTPN4-204ENST00000431283 SF3B2Q13435 895 aaKnown RBP9.35□□□□□ -0.91
PTPN4-204ENST00000431283 C1orf127Q8N9H9 656 aa9.35□□□□□ -0.91
PTPN4-204ENST00000431283 MEGF10Q96KG7 1140 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms