RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 KCNB2Q92953 911 aa12.49□□□□□ -0.41
HDAC9-210ENST00000428307 PDRG1Q9NUG6 133 aa12.49□□□□□ -0.41
HDAC9-210ENST00000428307 CYP46A1Q9Y6A2 500 aa12.49□□□□□ -0.41
HDAC9-210ENST00000428307 ZNF609O15014 1411 aa12.48□□□□□ -0.41
HDAC9-210ENST00000428307 DTNBO60941 627 aa12.48□□□□□ -0.41
HDAC9-210ENST00000428307 HELBQ8NG08 1087 aaPredicted RBP12.48□□□□□ -0.41
HDAC9-210ENST00000428307 INTS4Q96HW7 963 aaKnown RBP12.48□□□□□ -0.41
HDAC9-210ENST00000428307 CHAMP1Q96JM3 812 aa12.48□□□□□ -0.41
HDAC9-210ENST00000428307 TCEANC2Q96MN5 208 aa12.48□□□□□ -0.41
HDAC9-210ENST00000428307 UTP14AQ9BVJ6 771 aaKnown RBP12.48□□□□□ -0.41
HDAC9-210ENST00000428307 ZSWIM6Q9HCJ5 1215 aa12.48□□□□□ -0.41
HDAC9-210ENST00000428307 LIMCH1Q9UPQ0 1083 aa12.48□□□□□ -0.41
HDAC9-210ENST00000428307 SH3TC1Q8TE82 1336 aa12.48□□□□□ -0.41
HDAC9-210ENST00000428307 SCARF1Q14162 830 aa12.48□□□□□ -0.41
HDAC9-210ENST00000428307 ATP2B3Q16720 1220 aa12.48□□□□□ -0.41
HDAC9-210ENST00000428307 RNF20Q5VTR2 975 aa12.48□□□□□ -0.41
HDAC9-210ENST00000428307 PI16Q6UXB8 463 aa12.48□□□□□ -0.41
HDAC9-210ENST00000428307 LINC00116Q8NCU8 138 aa12.48□□□□□ -0.41
HDAC9-210ENST00000428307 MCTP1Q6DN14 999 aa12.47□□□□□ -0.41
HDAC9-210ENST00000428307 TM6SF1Q9BZW5 370 aa12.47□□□□□ -0.41
HDAC9-210ENST00000428307 MEX3CQ5U5Q3 659 aaKnown RBP12.47□□□□□ -0.41
HDAC9-210ENST00000428307 VPS53Q5VIR6 699 aa12.47□□□□□ -0.41
HDAC9-210ENST00000428307 SEC31BQ9NQW1 1179 aa12.47□□□□□ -0.41
HDAC9-210ENST00000428307 GOLGA6L22H0YM25 854 aa12.46□□□□□ -0.41
HDAC9-210ENST00000428307 LARGE1O95461 756 aa12.46□□□□□ -0.41
HDAC9-210ENST00000428307 PSMA5P28066 241 aa12.46□□□□□ -0.41
HDAC9-210ENST00000428307 ZAP70P43403 619 aa12.46□□□□□ -0.41
HDAC9-210ENST00000428307 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.46□□□□□ -0.41
HDAC9-210ENST00000428307 WNK3Q9BYP7 1800 aa12.46□□□□□ -0.41
HDAC9-210ENST00000428307 SNAP23O00161 211 aa12.45□□□□□ -0.42
HDAC9-210ENST00000428307 PDE8BO95263 885 aa12.45□□□□□ -0.42
HDAC9-210ENST00000428307 BICDL1Q6ZP65 573 aa12.45□□□□□ -0.42
HDAC9-210ENST00000428307 CLEC17AQ6ZS10 378 aa12.45□□□□□ -0.42
HDAC9-210ENST00000428307 RNF113AO15541 343 aaKnown RBP12.45□□□□□ -0.42
HDAC9-210ENST00000428307 PARP10Q53GL7 1025 aa12.45□□□□□ -0.42
HDAC9-210ENST00000428307 BLOC1S2Q6QNY1 142 aa12.45□□□□□ -0.42
HDAC9-210ENST00000428307 NWD2Q9ULI1 1742 aa12.45□□□□□ -0.42
HDAC9-210ENST00000428307 SPATA31A6Q5VVP1 1343 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 FOXD4L6Q3SYB3 417 aaPredicted RBP12.44□□□□□ -0.42
HDAC9-210ENST00000428307 ZMYM1Q5SVZ6 1142 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 USPL1Q5W0Q7 1092 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 FOXD4L3Q6VB84 417 aaPredicted RBP12.44□□□□□ -0.42
HDAC9-210ENST00000428307 VGLL2Q8N8G2 317 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 IL27Q8NEV9 243 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 MPHOSPH8Q99549 860 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 HELLSQ9NRZ9 838 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 RIC1Q4ADV7 1423 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 NTSR2O95665 410 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 CYP21A2P08686 494 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 WASHC4Q2M389 1173 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 CCDC83Q8IWF9 413 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 NECAB1Q8N987 351 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.44□□□□□ -0.42
HDAC9-210ENST00000428307 HMG20BQ9P0W2 317 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 ZNF652Q9Y2D9 606 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 RFX7Q2KHR2 1363 aa12.44□□□□□ -0.42
HDAC9-210ENST00000428307 HSPA1LP34931 641 aa12.43□□□□□ -0.42
HDAC9-210ENST00000428307 MCAMP43121 646 aa12.43□□□□□ -0.42
HDAC9-210ENST00000428307 ME3Q16798 604 aa12.43□□□□□ -0.42
HDAC9-210ENST00000428307 OSBP2Q969R2 916 aa12.43□□□□□ -0.42
HDAC9-210ENST00000428307 AK7Q96M32 723 aa12.43□□□□□ -0.42
HDAC9-210ENST00000428307 TPCN1Q9ULQ1 816 aa12.43□□□□□ -0.42
HDAC9-210ENST00000428307 U3KPZ7 1027 aaPredicted RBP12.43□□□□□ -0.42
HDAC9-210ENST00000428307 BRD1O95696 1058 aa12.43□□□□□ -0.42
HDAC9-210ENST00000428307 CERKQ8TCT0 537 aa12.43□□□□□ -0.42
HDAC9-210ENST00000428307 GJD4Q96KN9 370 aaPredicted RBP12.43□□□□□ -0.42
HDAC9-210ENST00000428307 RPAP1Q9BWH6 1393 aaPredicted RBP12.43□□□□□ -0.42
HDAC9-210ENST00000428307 MAST3O60307 1309 aa12.42□□□□□ -0.42
HDAC9-210ENST00000428307 M0R2C6 588 aa12.42□□□□□ -0.42
HDAC9-210ENST00000428307 PRPF40AO75400 957 aaKnown RBP12.42□□□□□ -0.42
HDAC9-210ENST00000428307 HSPD1P10809 573 aaKnown RBP12.42□□□□□ -0.42
HDAC9-210ENST00000428307 RPS6KB1P23443 525 aa12.42□□□□□ -0.42
HDAC9-210ENST00000428307 PHKA1P46020 1223 aa12.42□□□□□ -0.42
HDAC9-210ENST00000428307 TSGA10IPQ3SY00 556 aa12.42□□□□□ -0.42
HDAC9-210ENST00000428307 CCDC152Q4G0S7 254 aa12.42□□□□□ -0.42
HDAC9-210ENST00000428307 NEK1Q96PY6 1258 aa12.42□□□□□ -0.42
HDAC9-210ENST00000428307 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.42□□□□□ -0.42
HDAC9-210ENST00000428307 DDX49Q9Y6V7 483 aaKnown RBP12.42□□□□□ -0.42
HDAC9-210ENST00000428307 NUP98P52948 1817 aa12.42□□□□□ -0.42
HDAC9-210ENST00000428307 MYH14Q7Z406 1995 aaKnown RBP12.42□□□□□ -0.42
HDAC9-210ENST00000428307 A0A0G2JLW4 131 aa12.42□□□□□ -0.42
HDAC9-210ENST00000428307 SKOR2Q2VWA4 1001 aaPredicted RBP12.42□□□□□ -0.42
HDAC9-210ENST00000428307 CCDC102BQ68D86 513 aa12.42□□□□□ -0.42
HDAC9-210ENST00000428307 CLEC4GQ6UXB4 293 aa12.42□□□□□ -0.42
HDAC9-210ENST00000428307 SMC3Q9UQE7 1217 aa12.42□□□□□ -0.42
HDAC9-210ENST00000428307 GTF2E1P29083 439 aaPredicted RBP12.41□□□□□ -0.42
HDAC9-210ENST00000428307 PUM3Q15397 648 aaKnown RBP12.41□□□□□ -0.42
HDAC9-210ENST00000428307 ERFEQ4G0M1 354 aa12.41□□□□□ -0.42
HDAC9-210ENST00000428307 ZSCAN31Q96LW9 406 aaPredicted RBP12.41□□□□□ -0.42
HDAC9-210ENST00000428307 SRP68Q9UHB9 627 aaKnown RBP12.41□□□□□ -0.42
HDAC9-210ENST00000428307 CCNL1Q9UK58 526 aaPredicted RBP12.41□□□□□ -0.42
HDAC9-210ENST00000428307 MROH5Q6ZUA9 1318 aa12.41□□□□□ -0.42
HDAC9-210ENST00000428307 GNPATO15228 680 aa12.41□□□□□ -0.42
HDAC9-210ENST00000428307 NCLP19338 710 aaKnown RBP12.41□□□□□ -0.42
HDAC9-210ENST00000428307 IGHMBP2P38935 993 aaKnown RBP12.41□□□□□ -0.42
HDAC9-210ENST00000428307 KRT32Q14532 448 aa12.41□□□□□ -0.42
HDAC9-210ENST00000428307 TTLL5Q6EMB2 1281 aa12.41□□□□□ -0.42
HDAC9-210ENST00000428307 LPIN2Q92539 896 aa12.41□□□□□ -0.42
HDAC9-210ENST00000428307 PUS7LQ9H0K6 701 aaKnown RBP12.41□□□□□ -0.42
HDAC9-210ENST00000428307 SH2B1Q9NRF2 756 aaPredicted RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms