RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 FOXD4L4Q8WXT5 416 aaPredicted RBP7.18□□□□□ -1.26
USP40-204ENST00000427947 BCL2L13Q9BXK5 485 aa7.18□□□□□ -1.26
USP40-204ENST00000427947 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.18□□□□□ -1.26
USP40-204ENST00000427947 ELOA3CA0A087WX78 387 aaPredicted RBP7.17□□□□□ -1.26
USP40-204ENST00000427947 ELOA3DA6NLF2 546 aaPredicted RBP7.17□□□□□ -1.26
USP40-204ENST00000427947 J3QW42 95 aa7.17□□□□□ -1.26
USP40-204ENST00000427947 KIF4AO95239 1232 aa7.17□□□□□ -1.26
USP40-204ENST00000427947 LDHBP07195 334 aaKnown RBP7.17□□□□□ -1.26
USP40-204ENST00000427947 HOXD8P13378 290 aaPredicted RBP7.17□□□□□ -1.26
USP40-204ENST00000427947 CPB1P15086 417 aa7.17□□□□□ -1.26
USP40-204ENST00000427947 EIF2AK2P19525 551 aaKnown RBP7.17□□□□□ -1.26
USP40-204ENST00000427947 ATP2B2Q01814 1243 aa7.17□□□□□ -1.26
USP40-204ENST00000427947 ELOA3BQ3SY89 546 aa7.17□□□□□ -1.26
USP40-204ENST00000427947 C1orf229Q6ZS94 237 aaPredicted RBP7.17□□□□□ -1.26
USP40-204ENST00000427947 FAM35AQ86V20 835 aa7.17□□□□□ -1.26
USP40-204ENST00000427947 GALNT6Q8NCL4 622 aa7.17□□□□□ -1.26
USP40-204ENST00000427947 ELOA3Q8NG57 546 aa7.17□□□□□ -1.26
USP40-204ENST00000427947 SPACA7Q96KW9 195 aa7.17□□□□□ -1.26
USP40-204ENST00000427947 SETDB2Q96T68 719 aa7.17□□□□□ -1.26
USP40-204ENST00000427947 MDFIQ99750 246 aa7.17□□□□□ -1.26
USP40-204ENST00000427947 NAGPAQ9UK23 515 aa7.17□□□□□ -1.26
USP40-204ENST00000427947 WWC3Q9ULE0 1092 aa7.17□□□□□ -1.26
USP40-204ENST00000427947 LOC102724428A0A0B4J2F2 783 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 OIP5O43482 229 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 GHRHP01286 108 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 CELA2BP08218 269 aaPredicted RBP7.16□□□□□ -1.26
USP40-204ENST00000427947 BCRP11274 1271 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 EDN3P14138 238 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 ALAS2P22557 587 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 SIK1P57059 783 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 LYPD4Q6UWN0 246 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 FBXO33Q7Z6M2 555 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 WHAMMQ8TF30 809 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 GIPC2Q8TF65 315 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 EDARADDQ8WWZ3 215 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 CCDC74AQ96AQ1 378 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 NPHS2Q9NP85 383 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 SALL4Q9UJQ4 1053 aa7.16□□□□□ -1.26
USP40-204ENST00000427947 GALNT12Q8IXK2 581 aa7.15□□□□□ -1.26
USP40-204ENST00000427947 SVOPQ8N4V2 548 aa7.15□□□□□ -1.26
USP40-204ENST00000427947 RBSNQ9H1K0 784 aa7.15□□□□□ -1.26
USP40-204ENST00000427947 LATS2Q9NRM7 1088 aa7.15□□□□□ -1.26
USP40-204ENST00000427947 SHISA8B8ZZ34 492 aa7.14□□□□□ -1.27
USP40-204ENST00000427947 WIPF1O43516 503 aa7.14□□□□□ -1.27
USP40-204ENST00000427947 ACPPP15309 386 aa7.14□□□□□ -1.27
USP40-204ENST00000427947 AMPD1P23109 780 aa7.14□□□□□ -1.27
USP40-204ENST00000427947 IRS1P35568 1242 aa7.14□□□□□ -1.27
USP40-204ENST00000427947 TAGLNQ01995 201 aaKnown RBP7.14□□□□□ -1.27
USP40-204ENST00000427947 MAP3K10Q02779 954 aa7.14□□□□□ -1.27
USP40-204ENST00000427947 ALG1LQ6GMV1 187 aa7.14□□□□□ -1.27
USP40-204ENST00000427947 EPS8L3Q8TE67 593 aaKnown RBP7.14□□□□□ -1.27
USP40-204ENST00000427947 PRPF40AO75400 957 aaKnown RBP7.13□□□□□ -1.27
USP40-204ENST00000427947 PERM1Q5SV97 790 aa7.13□□□□□ -1.27
USP40-204ENST00000427947 PEAR1Q5VY43 1037 aaPredicted RBP7.13□□□□□ -1.27
USP40-204ENST00000427947 ZNF385CQ66K41 422 aaPredicted RBP7.13□□□□□ -1.27
USP40-204ENST00000427947 PSAPL1Q6NUJ1 521 aa7.13□□□□□ -1.27
USP40-204ENST00000427947 ELMSAN1Q6PJG2 1045 aa7.13□□□□□ -1.27
USP40-204ENST00000427947 PI16Q6UXB8 463 aa7.13□□□□□ -1.27
USP40-204ENST00000427947 CHSY3Q70JA7 882 aa7.13□□□□□ -1.27
USP40-204ENST00000427947 MICALL1Q8N3F8 863 aa7.13□□□□□ -1.27
USP40-204ENST00000427947 CEP120Q8N960 986 aa7.13□□□□□ -1.27
USP40-204ENST00000427947 FBF1Q8TES7 1133 aa7.13□□□□□ -1.27
USP40-204ENST00000427947 NUDT8Q8WV74 236 aa7.13□□□□□ -1.27
USP40-204ENST00000427947 SMG9Q9H0W8 520 aaKnown RBP7.13□□□□□ -1.27
USP40-204ENST00000427947 LRRC4BQ9NT99 713 aa7.13□□□□□ -1.27
USP40-204ENST00000427947 NLRP2Q9NX02 1062 aa7.13□□□□□ -1.27
USP40-204ENST00000427947 GADD45BO75293 160 aaPredicted RBP7.12□□□□□ -1.27
USP40-204ENST00000427947 TRPA1O75762 1119 aa7.12□□□□□ -1.27
USP40-204ENST00000427947 FGD1P98174 961 aa7.12□□□□□ -1.27
USP40-204ENST00000427947 ATP11AP98196 1134 aa7.12□□□□□ -1.27
USP40-204ENST00000427947 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.12□□□□□ -1.27
USP40-204ENST00000427947 ZNF326Q5BKZ1 582 aaKnown RBP7.12□□□□□ -1.27
USP40-204ENST00000427947 PLD4Q96BZ4 506 aa7.12□□□□□ -1.27
USP40-204ENST00000427947 OSMRQ99650 979 aa7.12□□□□□ -1.27
USP40-204ENST00000427947 DUSP9Q99956 384 aaKnown RBP7.12□□□□□ -1.27
USP40-204ENST00000427947 LPIN3Q9BQK8 851 aa7.12□□□□□ -1.27
USP40-204ENST00000427947 RASSF4Q9H2L5 321 aa7.12□□□□□ -1.27
USP40-204ENST00000427947 STARD13Q9Y3M8 1113 aa7.12□□□□□ -1.27
USP40-204ENST00000427947 ZNF16P17020 682 aaPredicted RBP7.11□□□□□ -1.27
USP40-204ENST00000427947 NEDD1Q8NHV4 660 aa7.11□□□□□ -1.27
USP40-204ENST00000427947 BTBD6Q96KE9 485 aa7.11□□□□□ -1.27
USP40-204ENST00000427947 ZKSCAN3Q9BRR0 538 aa7.11□□□□□ -1.27
USP40-204ENST00000427947 EHD4Q9H223 541 aa7.11□□□□□ -1.27
USP40-204ENST00000427947 JPH1Q9HDC5 661 aaPredicted RBP7.11□□□□□ -1.27
USP40-204ENST00000427947 ENAMQ9NRM1 1142 aa7.11□□□□□ -1.27
USP40-204ENST00000427947 DZANK1Q9NVP4 752 aa7.11□□□□□ -1.27
USP40-204ENST00000427947 A0A1W2PP55 124 aa7.1□□□□□ -1.27
USP40-204ENST00000427947 M0R082 166 aa7.1□□□□□ -1.27
USP40-204ENST00000427947 RGS9O75916 674 aaPredicted RBP7.1□□□□□ -1.27
USP40-204ENST00000427947 SMNDC1O75940 238 aaKnown RBP eCLIP7.1□□□□□ -1.27
USP40-204ENST00000427947 ALBP02768 609 aa7.1□□□□□ -1.27
USP40-204ENST00000427947 CEP135Q66GS9 1140 aa7.1□□□□□ -1.27
USP40-204ENST00000427947 KANK3Q6NY19 840 aa7.1□□□□□ -1.27
USP40-204ENST00000427947 ZNF417Q8TAU3 575 aa7.1□□□□□ -1.27
USP40-204ENST00000427947 HHIPQ96QV1 700 aa7.1□□□□□ -1.27
USP40-204ENST00000427947 ZNF587Q96SQ5 575 aaPredicted RBP7.1□□□□□ -1.27
USP40-204ENST00000427947 PBX4Q9BYU1 374 aa7.1□□□□□ -1.27
USP40-204ENST00000427947 RNF19AQ9NV58 838 aa7.1□□□□□ -1.27
USP40-204ENST00000427947 FRRS1LQ9P0K9 344 aa7.1□□□□□ -1.27
USP40-204ENST00000427947 RBM47A0AV96 593 aaKnown RBP7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms