RNA–Protein interactions for RNA: ENST00000427191.6

PTPN13-203, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,487 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-203ENST00000427191 NCBP1Q09161 790 aaKnown RBP16.37■□□□□ 0.21
PTPN13-203ENST00000427191 CFAP58Q5T655 872 aa16.37■□□□□ 0.21
PTPN13-203ENST00000427191 LMNTD2Q8IXW0 634 aa16.37■□□□□ 0.21
PTPN13-203ENST00000427191 CABP5Q9NP86 173 aa16.37■□□□□ 0.21
PTPN13-203ENST00000427191 FAM76AQ8TAV0 307 aa16.37■□□□□ 0.21
PTPN13-203ENST00000427191 RALGAPBQ86X10 1494 aa16.37■□□□□ 0.21
PTPN13-203ENST00000427191 SKILP12757 684 aa16.37■□□□□ 0.21
PTPN13-203ENST00000427191 ARHGAP24Q8N264 748 aa16.37■□□□□ 0.21
PTPN13-203ENST00000427191 CLCN1P35523 988 aa16.37■□□□□ 0.21
PTPN13-203ENST00000427191 HAUS2Q9NVX0 235 aa16.37■□□□□ 0.21
PTPN13-203ENST00000427191 GIGYF1O75420 1035 aaPredicted RBP16.37■□□□□ 0.21
PTPN13-203ENST00000427191 ARL1P40616 181 aaPredicted RBP16.37■□□□□ 0.21
PTPN13-203ENST00000427191 CCDC63Q8NA47 563 aa16.37■□□□□ 0.21
PTPN13-203ENST00000427191 IBSPP21815 317 aaPredicted RBP16.37■□□□□ 0.21
PTPN13-203ENST00000427191 FYB2Q5VWT5 728 aa16.37■□□□□ 0.21
PTPN13-203ENST00000427191 CASQ2O14958 399 aaPredicted RBP16.36■□□□□ 0.21
PTPN13-203ENST00000427191 ZSCAN23Q3MJ62 389 aa16.36■□□□□ 0.21
PTPN13-203ENST00000427191 RGS22Q8NE09 1264 aa16.36■□□□□ 0.21
PTPN13-203ENST00000427191 CCDC114Q96M63 670 aa16.36■□□□□ 0.21
PTPN13-203ENST00000427191 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.36■□□□□ 0.21
PTPN13-203ENST00000427191 CFTRP13569 1480 aa16.36■□□□□ 0.21
PTPN13-203ENST00000427191 CALML3P27482 149 aa16.36■□□□□ 0.21
PTPN13-203ENST00000427191 BOLA2Q9H3K6 86 aa16.36■□□□□ 0.21
PTPN13-203ENST00000427191 ZSCAN22P10073 491 aaPredicted RBP16.36■□□□□ 0.21
PTPN13-203ENST00000427191 PIK3R4Q99570 1358 aa16.36■□□□□ 0.21
PTPN13-203ENST00000427191 CCDC144CPQ8IYA2 1237 aa16.36■□□□□ 0.21
PTPN13-203ENST00000427191 CRNKL1Q9BZJ0 848 aaKnown RBP16.36■□□□□ 0.21
PTPN13-203ENST00000427191 SAMM50Q9Y512 469 aa16.36■□□□□ 0.21
PTPN13-203ENST00000427191 NEK1Q96PY6 1258 aa16.35■□□□□ 0.21
PTPN13-203ENST00000427191 CCDC94Q9BW85 323 aaPredicted RBP16.35■□□□□ 0.21
PTPN13-203ENST00000427191 NKIRAS1Q9NYS0 192 aa16.35■□□□□ 0.21
PTPN13-203ENST00000427191 UQCRFS1P1P0C7P4 283 aa16.35■□□□□ 0.21
PTPN13-203ENST00000427191 CCDC26Q8TAB7 109 aa16.35■□□□□ 0.21
PTPN13-203ENST00000427191 USP16Q9Y5T5 823 aa16.35■□□□□ 0.21
PTPN13-203ENST00000427191 CNGA4Q8IV77 575 aa16.35■□□□□ 0.21
PTPN13-203ENST00000427191 TSNAXIP1Q2TAA8 658 aa16.35■□□□□ 0.21
PTPN13-203ENST00000427191 IL16Q14005 1332 aa16.35■□□□□ 0.21
PTPN13-203ENST00000427191 CALCOCO2Q13137 446 aa16.35■□□□□ 0.21
PTPN13-203ENST00000427191 RTL9Q8NET4 1388 aa16.35■□□□□ 0.21
PTPN13-203ENST00000427191 TRIM14Q14142 442 aa16.34■□□□□ 0.21
PTPN13-203ENST00000427191 MCM6Q14566 821 aa16.34■□□□□ 0.21
PTPN13-203ENST00000427191 CEP57Q86XR8 500 aa16.34■□□□□ 0.21
PTPN13-203ENST00000427191 MRPS27Q92552 414 aaKnown RBP16.34■□□□□ 0.21
PTPN13-203ENST00000427191 AQRO60306 1485 aaKnown RBP eCLIP16.34■□□□□ 0.21
PTPN13-203ENST00000427191 CALM1P0DP23 149 aa16.34■□□□□ 0.21
PTPN13-203ENST00000427191 CALM2P0DP24 149 aa16.34■□□□□ 0.21
PTPN13-203ENST00000427191 CALM3P0DP25 149 aa16.34■□□□□ 0.21
PTPN13-203ENST00000427191 INTS8Q75QN2 995 aaKnown RBP16.34■□□□□ 0.21
PTPN13-203ENST00000427191 MICALL1Q8N3F8 863 aa16.34■□□□□ 0.21
PTPN13-203ENST00000427191 BCAP29Q9UHQ4 241 aa16.34■□□□□ 0.21
PTPN13-203ENST00000427191 TRPC3Q13507 836 aa16.34■□□□□ 0.21
PTPN13-203ENST00000427191 NOLC1Q14978 699 aaKnown RBP eCLIP16.34■□□□□ 0.21
PTPN13-203ENST00000427191 PHLDB2Q86SQ0 1253 aa16.34■□□□□ 0.21
PTPN13-203ENST00000427191 ORC3Q9UBD5 711 aaPredicted RBP16.34■□□□□ 0.21
PTPN13-203ENST00000427191 RAB3IPQ96QF0 476 aaPredicted RBP16.34■□□□□ 0.21
PTPN13-203ENST00000427191 VIMP08670 466 aaKnown RBP16.34■□□□□ 0.21
PTPN13-203ENST00000427191 WDR78Q5VTH9 848 aa16.34■□□□□ 0.21
PTPN13-203ENST00000427191 CEP120Q8N960 986 aa16.34■□□□□ 0.21
PTPN13-203ENST00000427191 TBC1D2Q9BYX2 928 aa16.34■□□□□ 0.21
PTPN13-203ENST00000427191 NCAPD3P42695 1498 aa16.33■□□□□ 0.21
PTPN13-203ENST00000427191 LIG1P18858 919 aa16.33■□□□□ 0.21
PTPN13-203ENST00000427191 SLC12A5Q9H2X9 1139 aa16.33■□□□□ 0.21
PTPN13-203ENST00000427191 RAD54L2Q9Y4B4 1467 aa16.33■□□□□ 0.21
PTPN13-203ENST00000427191 PHACTR2O75167 634 aa16.33■□□□□ 0.21
PTPN13-203ENST00000427191 WDR97A6NE52 1622 aa16.33■□□□□ 0.21
PTPN13-203ENST00000427191 RUSC2Q8N2Y8 1516 aa16.33■□□□□ 0.2
PTPN13-203ENST00000427191 CLGNO14967 610 aa16.33■□□□□ 0.2
PTPN13-203ENST00000427191 SYT1P21579 422 aa16.33■□□□□ 0.2
PTPN13-203ENST00000427191 RARSP54136 660 aaKnown RBP16.33■□□□□ 0.2
PTPN13-203ENST00000427191 NAP1L4Q99733 375 aaKnown RBP16.33■□□□□ 0.2
PTPN13-203ENST00000427191 SSFA2P28290 1259 aa16.33■□□□□ 0.2
PTPN13-203ENST00000427191 VWA3BQ502W6 1294 aa16.33■□□□□ 0.2
PTPN13-203ENST00000427191 CCDC42Q96M95 316 aa16.33■□□□□ 0.2
PTPN13-203ENST00000427191 TSPY2A6NKD2 308 aa16.33■□□□□ 0.2
PTPN13-203ENST00000427191 RASSF4Q9H2L5 321 aa16.33■□□□□ 0.2
PTPN13-203ENST00000427191 RRAGBQ5VZM2 374 aa16.33■□□□□ 0.2
PTPN13-203ENST00000427191 A0A1B0GUL7 405 aa16.32■□□□□ 0.2
PTPN13-203ENST00000427191 CUL7Q14999 1698 aa16.32■□□□□ 0.2
PTPN13-203ENST00000427191 CCDC61Q9Y6R9 512 aa16.32■□□□□ 0.2
PTPN13-203ENST00000427191 NEK11Q8NG66 645 aa16.32■□□□□ 0.2
PTPN13-203ENST00000427191 ESR2Q92731 530 aa16.32■□□□□ 0.2
PTPN13-203ENST00000427191 STMN1P16949 149 aa16.32■□□□□ 0.2
PTPN13-203ENST00000427191 ARHGAP25P42331 645 aa16.32■□□□□ 0.2
PTPN13-203ENST00000427191 UBE2Q2Q8WVN8 375 aa16.32■□□□□ 0.2
PTPN13-203ENST00000427191 ATP6V0A2Q9Y487 856 aa16.32■□□□□ 0.2
PTPN13-203ENST00000427191 STK24Q9Y6E0 443 aa16.32■□□□□ 0.2
PTPN13-203ENST00000427191 WTAPQ15007 396 aa16.32■□□□□ 0.2
PTPN13-203ENST00000427191 FEZ2Q9UHY8 353 aaPredicted RBP16.32■□□□□ 0.2
PTPN13-203ENST00000427191 SARNPP82979 210 aaKnown RBP16.31■□□□□ 0.2
PTPN13-203ENST00000427191 PRPF31Q8WWY3 499 aaKnown RBP16.31■□□□□ 0.2
PTPN13-203ENST00000427191 OGFRQ9NZT2 677 aa16.31■□□□□ 0.2
PTPN13-203ENST00000427191 BIN1O00499 593 aa16.31■□□□□ 0.2
PTPN13-203ENST00000427191 ACTN4O43707 911 aaKnown RBP16.31■□□□□ 0.2
PTPN13-203ENST00000427191 IRX4P78413 519 aa16.31■□□□□ 0.2
PTPN13-203ENST00000427191 SEL1L2Q5TEA6 688 aa16.31■□□□□ 0.2
PTPN13-203ENST00000427191 C6orf50Q9HD87 102 aa16.31■□□□□ 0.2
PTPN13-203ENST00000427191 DNAI1Q9UI46 699 aa16.31■□□□□ 0.2
PTPN13-203ENST00000427191 PTPN23Q9H3S7 1636 aa16.31■□□□□ 0.2
PTPN13-203ENST00000427191 INF2Q27J81 1249 aa16.31■□□□□ 0.2
PTPN13-203ENST00000427191 IGF1RP08069 1367 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms