RNA–Protein interactions for RNA: ENST00000426248.7

PKP4-205, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 4,134 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-205ENST00000426248 PTGS1P23219 599 aa18.77■□□□□ 0.6
PKP4-205ENST00000426248 GTF3C6Q969F1 213 aa18.77■□□□□ 0.6
PKP4-205ENST00000426248 ECHDC1Q9NTX5 307 aa18.77■□□□□ 0.6
PKP4-205ENST00000426248 ANKRD18BA2A2Z9 1011 aa18.76■□□□□ 0.59
PKP4-205ENST00000426248 PDIA6Q15084 440 aa18.76■□□□□ 0.59
PKP4-205ENST00000426248 VPS72Q15906 364 aa18.76■□□□□ 0.59
PKP4-205ENST00000426248 WASHC4Q2M389 1173 aa18.76■□□□□ 0.59
PKP4-205ENST00000426248 C10orf67Q8IYJ2 551 aa18.76■□□□□ 0.59
PKP4-205ENST00000426248 SSH3Q8TE77 659 aa18.76■□□□□ 0.59
PKP4-205ENST00000426248 NKX1-1Q15270 411 aaPredicted RBP18.76■□□□□ 0.59
PKP4-205ENST00000426248 SNRKQ9NRH2 765 aa18.76■□□□□ 0.59
PKP4-205ENST00000426248 HSP90B1P14625 803 aaKnown RBP18.76■□□□□ 0.59
PKP4-205ENST00000426248 TTC39AQ5SRH9 613 aa18.76■□□□□ 0.59
PKP4-205ENST00000426248 HELBQ8NG08 1087 aaPredicted RBP18.76■□□□□ 0.59
PKP4-205ENST00000426248 SECISBP2LQ93073 1101 aaKnown RBP18.76■□□□□ 0.59
PKP4-205ENST00000426248 TERF2Q15554 542 aa18.75■□□□□ 0.59
PKP4-205ENST00000426248 CCDC158Q5M9N0 1113 aa18.75■□□□□ 0.59
PKP4-205ENST00000426248 TSPYL1Q9H0U9 437 aa18.75■□□□□ 0.59
PKP4-205ENST00000426248 STRCQ7RTU9 1775 aa18.75■□□□□ 0.59
PKP4-205ENST00000426248 NCBP1Q09161 790 aaKnown RBP18.75■□□□□ 0.59
PKP4-205ENST00000426248 NBPF5PQ86XG9 351 aaPredicted RBP18.75■□□□□ 0.59
PKP4-205ENST00000426248 RSPH14Q9UHP6 348 aa18.75■□□□□ 0.59
PKP4-205ENST00000426248 PALLDQ8WX93 1383 aa18.75■□□□□ 0.59
PKP4-205ENST00000426248 SPATA31A6Q5VVP1 1343 aa18.75■□□□□ 0.59
PKP4-205ENST00000426248 TFCP2Q12800 502 aa18.75■□□□□ 0.59
PKP4-205ENST00000426248 HLFQ16534 295 aa18.75■□□□□ 0.59
PKP4-205ENST00000426248 STRCP1A6NGW2 1772 aa18.75■□□□□ 0.59
PKP4-205ENST00000426248 TPM3P06753 285 aa18.74■□□□□ 0.59
PKP4-205ENST00000426248 GTF2A1P52655 376 aaPredicted RBP18.74■□□□□ 0.59
PKP4-205ENST00000426248 SF3B2Q13435 895 aaKnown RBP18.74■□□□□ 0.59
PKP4-205ENST00000426248 USP48Q86UV5 1035 aa18.74■□□□□ 0.59
PKP4-205ENST00000426248 IGHMBP2P38935 993 aaKnown RBP18.74■□□□□ 0.59
PKP4-205ENST00000426248 SETDB2Q96T68 719 aa18.74■□□□□ 0.59
PKP4-205ENST00000426248 TIMM10P62072 90 aa18.73■□□□□ 0.59
PKP4-205ENST00000426248 UTP14AQ9BVJ6 771 aaKnown RBP18.73■□□□□ 0.59
PKP4-205ENST00000426248 EPHA10Q5JZY3 1008 aa18.73■□□□□ 0.59
PKP4-205ENST00000426248 CCDC183Q5T5S1 534 aa18.73■□□□□ 0.59
PKP4-205ENST00000426248 CCDC186Q7Z3E2 898 aa18.73■□□□□ 0.59
PKP4-205ENST00000426248 SYNE4Q8N205 404 aa18.73■□□□□ 0.59
PKP4-205ENST00000426248 TMX4Q9H1E5 349 aaPredicted RBP18.73■□□□□ 0.59
PKP4-205ENST00000426248 ST7Q9NRC1 585 aa18.73■□□□□ 0.59
PKP4-205ENST00000426248 MAP3K15Q6ZN16 1313 aa18.72■□□□□ 0.59
PKP4-205ENST00000426248 KDM4AO75164 1064 aa18.72■□□□□ 0.59
PKP4-205ENST00000426248 CYP19A1P11511 503 aaPredicted RBP18.72■□□□□ 0.59
PKP4-205ENST00000426248 UVSSAQ2YD98 709 aa18.72■□□□□ 0.59
PKP4-205ENST00000426248 SLFN14P0C7P3 912 aa18.72■□□□□ 0.59
PKP4-205ENST00000426248 GIGYF2Q6Y7W6 1299 aaKnown RBP18.72■□□□□ 0.59
PKP4-205ENST00000426248 UPF3BQ9BZI7 483 aaKnown RBP18.72■□□□□ 0.59
PKP4-205ENST00000426248 TRMT1Q9NXH9 659 aaKnown RBP18.72■□□□□ 0.59
PKP4-205ENST00000426248 TFCP2L1Q9NZI6 479 aa18.71■□□□□ 0.59
PKP4-205ENST00000426248 KRT27Q7Z3Y8 459 aa18.71■□□□□ 0.59
PKP4-205ENST00000426248 CTNNA3Q9UI47 895 aa18.71■□□□□ 0.59
PKP4-205ENST00000426248 DLG5Q8TDM6 1919 aa18.7■□□□□ 0.58
PKP4-205ENST00000426248 G3V3G9 751 aa18.7■□□□□ 0.58
PKP4-205ENST00000426248 IL6STP40189 918 aaPredicted RBP18.7■□□□□ 0.58
PKP4-205ENST00000426248 CAMK4Q16566 473 aa18.7■□□□□ 0.58
PKP4-205ENST00000426248 DCAF8Q5TAQ9 597 aa18.7■□□□□ 0.58
PKP4-205ENST00000426248 NDUFB9Q9Y6M9 179 aa18.7■□□□□ 0.58
PKP4-205ENST00000426248 SH3TC1Q8TE82 1336 aa18.7■□□□□ 0.58
PKP4-205ENST00000426248 TMX3Q96JJ7 454 aa18.7■□□□□ 0.58
PKP4-205ENST00000426248 IFIT1P09914 478 aaKnown RBP18.7■□□□□ 0.58
PKP4-205ENST00000426248 KLHL34Q8N239 644 aa18.7■□□□□ 0.58
PKP4-205ENST00000426248 AK9Q5TCS8 1911 aa18.7■□□□□ 0.58
PKP4-205ENST00000426248 TRAPPC3LQ5T215 181 aa18.69■□□□□ 0.58
PKP4-205ENST00000426248 DDX46Q7L014 1031 aaKnown RBP18.69■□□□□ 0.58
PKP4-205ENST00000426248 LRMPQ12912 555 aa18.69■□□□□ 0.58
PKP4-205ENST00000426248 BARGINQ6ZT62 677 aa18.69■□□□□ 0.58
PKP4-205ENST00000426248 GOLGA6L1Q8N7Z2 621 aa18.69■□□□□ 0.58
PKP4-205ENST00000426248 KIAA1524Q8TCG1 905 aa18.69■□□□□ 0.58
PKP4-205ENST00000426248 APBA3O96018 575 aa18.69■□□□□ 0.58
PKP4-205ENST00000426248 DHX37Q8IY37 1157 aaKnown RBP18.69■□□□□ 0.58
PKP4-205ENST00000426248 SMTNL1A8MU46 457 aa18.68■□□□□ 0.58
PKP4-205ENST00000426248 GOLIM4O00461 696 aa18.68■□□□□ 0.58
PKP4-205ENST00000426248 GSPT1P15170 499 aaKnown RBP18.68■□□□□ 0.58
PKP4-205ENST00000426248 ITGA6P23229 1130 aa18.68■□□□□ 0.58
PKP4-205ENST00000426248 DDX41Q9UJV9 622 aaKnown RBP18.68■□□□□ 0.58
PKP4-205ENST00000426248 DTNBO60941 627 aa18.68■□□□□ 0.58
PKP4-205ENST00000426248 ZKSCAN1P17029 563 aaPredicted RBP18.68■□□□□ 0.58
PKP4-205ENST00000426248 HNRNPH2P55795 449 aaKnown RBP18.68■□□□□ 0.58
PKP4-205ENST00000426248 GPS2Q13227 327 aa18.68■□□□□ 0.58
PKP4-205ENST00000426248 IL15P40933 162 aaPredicted RBP18.68■□□□□ 0.58
PKP4-205ENST00000426248 ZNF397Q8NF99 534 aaPredicted RBP18.68■□□□□ 0.58
PKP4-205ENST00000426248 LARP6Q9BRS8 491 aaKnown RBP18.68■□□□□ 0.58
PKP4-205ENST00000426248 ELF2Q15723 593 aa18.68■□□□□ 0.58
PKP4-205ENST00000426248 NEK11Q8NG66 645 aa18.68■□□□□ 0.58
PKP4-205ENST00000426248 ANKRD7Q92527 254 aa18.68■□□□□ 0.58
PKP4-205ENST00000426248 CNPY2Q9Y2B0 182 aa18.68■□□□□ 0.58
PKP4-205ENST00000426248 AKAP2Q9Y2D5 859 aa18.68■□□□□ 0.58
PKP4-205ENST00000426248 CEP135Q66GS9 1140 aa18.67■□□□□ 0.58
PKP4-205ENST00000426248 KIF18AQ8NI77 898 aa18.67■□□□□ 0.58
PKP4-205ENST00000426248 DBNDD2Q9BQY9 259 aa18.67■□□□□ 0.58
PKP4-205ENST00000426248 ROBO1Q9Y6N7 1651 aa18.67■□□□□ 0.58
PKP4-205ENST00000426248 IDH1O75874 414 aaKnown RBP18.67■□□□□ 0.58
PKP4-205ENST00000426248 USPL1Q5W0Q7 1092 aa18.67■□□□□ 0.58
PKP4-205ENST00000426248 CLEC17AQ6ZS10 378 aa18.67■□□□□ 0.58
PKP4-205ENST00000426248 RASSF4Q9H2L5 321 aa18.67■□□□□ 0.58
PKP4-205ENST00000426248 IQSEC3Q9UPP2 1182 aaPredicted RBP18.67■□□□□ 0.58
PKP4-205ENST00000426248 FAM196AQ6ZSG2 479 aa18.67■□□□□ 0.58
PKP4-205ENST00000426248 EAF2Q96CJ1 260 aaPredicted RBP18.67■□□□□ 0.58
PKP4-205ENST00000426248 ZDHHC9Q9Y397 364 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms