RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 ABCC12Q96J65 1359 aa11.41□□□□□ -0.58
HMGB4-201ENST00000425537 LAMB2P55268 1798 aa11.41□□□□□ -0.58
HMGB4-201ENST00000425537 MROH5Q6ZUA9 1318 aa11.41□□□□□ -0.58
HMGB4-201ENST00000425537 C4AP0C0L4 1744 aa11.41□□□□□ -0.58
HMGB4-201ENST00000425537 NPM3O75607 178 aaKnown RBP11.41□□□□□ -0.58
HMGB4-201ENST00000425537 MAP4K4O95819 1239 aaPredicted RBP11.41□□□□□ -0.58
HMGB4-201ENST00000425537 ITGA6P23229 1130 aa11.41□□□□□ -0.58
HMGB4-201ENST00000425537 LDHAL6AQ6ZMR3 332 aa11.41□□□□□ -0.58
HMGB4-201ENST00000425537 IL17RAQ96F46 866 aa11.41□□□□□ -0.58
HMGB4-201ENST00000425537 KIF2CQ99661 725 aa11.41□□□□□ -0.58
HMGB4-201ENST00000425537 HAUS7Q99871 368 aa11.41□□□□□ -0.58
HMGB4-201ENST00000425537 BOLA2Q9H3K6 86 aa11.41□□□□□ -0.58
HMGB4-201ENST00000425537 CNNM1Q9NRU3 951 aa11.41□□□□□ -0.58
HMGB4-201ENST00000425537 CHMP5Q9NZZ3 219 aa11.41□□□□□ -0.58
HMGB4-201ENST00000425537 DBNLQ9UJU6 430 aaKnown RBP11.41□□□□□ -0.58
HMGB4-201ENST00000425537 CIZ1Q9ULV3 898 aaPredicted RBP11.41□□□□□ -0.58
HMGB4-201ENST00000425537 ATF5Q9Y2D1 282 aaPredicted RBP11.41□□□□□ -0.58
HMGB4-201ENST00000425537 RTCBQ9Y3I0 505 aaKnown RBP11.41□□□□□ -0.58
HMGB4-201ENST00000425537 ZPR1O75312 459 aa11.4□□□□□ -0.58
HMGB4-201ENST00000425537 METTL24Q5JXM2 366 aa11.4□□□□□ -0.58
HMGB4-201ENST00000425537 RNF20Q5VTR2 975 aa11.4□□□□□ -0.58
HMGB4-201ENST00000425537 CWC27Q6UX04 472 aaKnown RBP11.4□□□□□ -0.58
HMGB4-201ENST00000425537 COL23A1Q86Y22 540 aaPredicted RBP11.4□□□□□ -0.58
HMGB4-201ENST00000425537 DBNDD2Q9BQY9 259 aa11.4□□□□□ -0.58
HMGB4-201ENST00000425537 RNF39Q9H2S5 420 aa11.4□□□□□ -0.58
HMGB4-201ENST00000425537 SRP68Q9UHB9 627 aaKnown RBP11.4□□□□□ -0.58
HMGB4-201ENST00000425537 SCN7AQ01118 1682 aa11.4□□□□□ -0.59
HMGB4-201ENST00000425537 UBN2Q6ZU65 1347 aa11.39□□□□□ -0.59
HMGB4-201ENST00000425537 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.39□□□□□ -0.59
HMGB4-201ENST00000425537 A0A1B0GUL7 405 aa11.39□□□□□ -0.59
HMGB4-201ENST00000425537 ZKSCAN1P17029 563 aaPredicted RBP11.39□□□□□ -0.59
HMGB4-201ENST00000425537 HSPA4P34932 840 aa11.39□□□□□ -0.59
HMGB4-201ENST00000425537 ATP2B3Q16720 1220 aa11.39□□□□□ -0.59
HMGB4-201ENST00000425537 LRRC24Q50LG9 513 aa11.39□□□□□ -0.59
HMGB4-201ENST00000425537 TTC39AQ5SRH9 613 aa11.39□□□□□ -0.59
HMGB4-201ENST00000425537 SUSD4Q5VX71 490 aa11.39□□□□□ -0.59
HMGB4-201ENST00000425537 ZNF594Q96JF6 807 aaPredicted RBP11.39□□□□□ -0.59
HMGB4-201ENST00000425537 SNRKQ9NRH2 765 aa11.39□□□□□ -0.59
HMGB4-201ENST00000425537 TLR7Q9NYK1 1049 aaKnown RBP11.39□□□□□ -0.59
HMGB4-201ENST00000425537 NARFQ9UHQ1 456 aa11.39□□□□□ -0.59
HMGB4-201ENST00000425537 QSER1Q2KHR3 1735 aa11.38□□□□□ -0.59
HMGB4-201ENST00000425537 NTSR2O95665 410 aa11.38□□□□□ -0.59
HMGB4-201ENST00000425537 ZFYP08048 801 aaPredicted RBP11.38□□□□□ -0.59
HMGB4-201ENST00000425537 IFIT1P09914 478 aaKnown RBP11.38□□□□□ -0.59
HMGB4-201ENST00000425537 GTF2E1P29083 439 aaPredicted RBP11.38□□□□□ -0.59
HMGB4-201ENST00000425537 IGHMBP2P38935 993 aaKnown RBP11.38□□□□□ -0.59
HMGB4-201ENST00000425537 KCNJ4P48050 445 aa11.38□□□□□ -0.59
HMGB4-201ENST00000425537 KBTBD3Q8NAB2 608 aa11.38□□□□□ -0.59
HMGB4-201ENST00000425537 CDC5LQ99459 802 aaKnown RBP11.38□□□□□ -0.59
HMGB4-201ENST00000425537 DNAJC2Q99543 621 aaKnown RBP11.38□□□□□ -0.59
HMGB4-201ENST00000425537 MPHOSPH8Q99549 860 aa11.38□□□□□ -0.59
HMGB4-201ENST00000425537 GREM2Q9H772 168 aa11.38□□□□□ -0.59
HMGB4-201ENST00000425537 PAG1Q9NWQ8 432 aa11.38□□□□□ -0.59
HMGB4-201ENST00000425537 UQCRFS1P1P0C7P4 283 aa11.37□□□□□ -0.59
HMGB4-201ENST00000425537 TTF1Q15361 905 aaPredicted RBP11.37□□□□□ -0.59
HMGB4-201ENST00000425537 ZSCAN25Q6NSZ9 544 aa11.37□□□□□ -0.59
HMGB4-201ENST00000425537 ZNF512BQ96KM6 892 aaPredicted RBP11.37□□□□□ -0.59
HMGB4-201ENST00000425537 SETDB2Q96T68 719 aa11.37□□□□□ -0.59
HMGB4-201ENST00000425537 LSG1Q9H089 658 aaKnown RBP11.37□□□□□ -0.59
HMGB4-201ENST00000425537 SLKQ9H2G2 1235 aaPredicted RBP11.37□□□□□ -0.59
HMGB4-201ENST00000425537 CWC22Q9HCG8 908 aaKnown RBP11.37□□□□□ -0.59
HMGB4-201ENST00000425537 HELLSQ9NRZ9 838 aa11.37□□□□□ -0.59
HMGB4-201ENST00000425537 RIPOR2Q9Y4F9 1068 aa11.37□□□□□ -0.59
HMGB4-201ENST00000425537 CCDC171Q6TFL3 1326 aa11.36□□□□□ -0.59
HMGB4-201ENST00000425537 LRP5O75197 1615 aa11.36□□□□□ -0.59
HMGB4-201ENST00000425537 SLC5A1P13866 664 aa11.36□□□□□ -0.59
HMGB4-201ENST00000425537 PSMA5P28066 241 aa11.36□□□□□ -0.59
HMGB4-201ENST00000425537 NEK4P51957 841 aa11.36□□□□□ -0.59
HMGB4-201ENST00000425537 TIMM10P62072 90 aa11.36□□□□□ -0.59
HMGB4-201ENST00000425537 NMIQ13287 307 aaPredicted RBP11.36□□□□□ -0.59
HMGB4-201ENST00000425537 PUM3Q15397 648 aaKnown RBP11.36□□□□□ -0.59
HMGB4-201ENST00000425537 TPTE2Q6XPS3 522 aa11.36□□□□□ -0.59
HMGB4-201ENST00000425537 ARHGEF1Q92888 912 aaKnown RBP11.36□□□□□ -0.59
HMGB4-201ENST00000425537 PUS3Q9BZE2 481 aaKnown RBP11.36□□□□□ -0.59
HMGB4-201ENST00000425537 TM6SF1Q9BZW5 370 aa11.36□□□□□ -0.59
HMGB4-201ENST00000425537 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.36□□□□□ -0.59
HMGB4-201ENST00000425537 HMG20BQ9P0W2 317 aa11.36□□□□□ -0.59
HMGB4-201ENST00000425537 PDE8BO95263 885 aa11.35□□□□□ -0.59
HMGB4-201ENST00000425537 PTMSP20962 102 aa11.35□□□□□ -0.59
HMGB4-201ENST00000425537 SSFA2P28290 1259 aa11.35□□□□□ -0.59
HMGB4-201ENST00000425537 RFC4P35249 363 aa11.35□□□□□ -0.59
HMGB4-201ENST00000425537 KRT32Q14532 448 aa11.35□□□□□ -0.59
HMGB4-201ENST00000425537 MCMDC2Q4G0Z9 681 aa11.35□□□□□ -0.59
HMGB4-201ENST00000425537 SLC10A5Q5PT55 438 aa11.35□□□□□ -0.59
HMGB4-201ENST00000425537 TRAPPC3LQ5T215 181 aa11.35□□□□□ -0.59
HMGB4-201ENST00000425537 KLHL34Q8N239 644 aa11.35□□□□□ -0.59
HMGB4-201ENST00000425537 LPIN2Q92539 896 aa11.35□□□□□ -0.59
HMGB4-201ENST00000425537 XAGE2Q96GT9 111 aa11.35□□□□□ -0.59
HMGB4-201ENST00000425537 CCDC85AQ96PX6 553 aaPredicted RBP11.35□□□□□ -0.59
HMGB4-201ENST00000425537 ANTXR1Q9H6X2 564 aa11.35□□□□□ -0.59
HMGB4-201ENST00000425537 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.35□□□□□ -0.59
HMGB4-201ENST00000425537 U3KPZ7 1027 aaPredicted RBP11.35□□□□□ -0.59
HMGB4-201ENST00000425537 DDX60Q8IY21 1712 aaKnown RBP11.35□□□□□ -0.59
HMGB4-201ENST00000425537 MED23Q9ULK4 1368 aa11.34□□□□□ -0.59
HMGB4-201ENST00000425537 FAM177BA6PVY3 158 aa11.34□□□□□ -0.59
HMGB4-201ENST00000425537 GOLIM4O00461 696 aa11.34□□□□□ -0.59
HMGB4-201ENST00000425537 HCLS1P14317 486 aaPredicted RBP11.34□□□□□ -0.59
HMGB4-201ENST00000425537 NBR1Q14596 966 aa11.34□□□□□ -0.59
HMGB4-201ENST00000425537 SF3B3Q15393 1217 aaKnown RBP11.34□□□□□ -0.59
HMGB4-201ENST00000425537 USPL1Q5W0Q7 1092 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms