RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 IL1RAPL2Q9NP60 686 aa17.56■□□□□ 0.4
SF3B1-204ENST00000414963 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.56■□□□□ 0.4
SF3B1-204ENST00000414963 COL4A1P02462 1669 aa17.55■□□□□ 0.4
SF3B1-204ENST00000414963 SOCS7O14512 581 aa17.55■□□□□ 0.4
SF3B1-204ENST00000414963 METTL24Q5JXM2 366 aa17.55■□□□□ 0.4
SF3B1-204ENST00000414963 C16orf71Q8IYS4 520 aaPredicted RBP17.55■□□□□ 0.4
SF3B1-204ENST00000414963 SPON1Q9HCB6 807 aa17.55■□□□□ 0.4
SF3B1-204ENST00000414963 MINPP1Q9UNW1 487 aa17.55■□□□□ 0.4
SF3B1-204ENST00000414963 AKAP2Q9Y2D5 859 aa17.55■□□□□ 0.4
SF3B1-204ENST00000414963 SALL3Q9BXA9 1300 aa17.54■□□□□ 0.4
SF3B1-204ENST00000414963 PDE8BO95263 885 aa17.54■□□□□ 0.4
SF3B1-204ENST00000414963 TGFB2P61812 414 aa17.54■□□□□ 0.4
SF3B1-204ENST00000414963 TNNI3KQ59H18 835 aa17.54■□□□□ 0.4
SF3B1-204ENST00000414963 EAF2Q96CJ1 260 aaPredicted RBP17.54■□□□□ 0.4
SF3B1-204ENST00000414963 STAP2Q9UGK3 403 aa17.54■□□□□ 0.4
SF3B1-204ENST00000414963 CD2APQ9Y5K6 639 aa17.54■□□□□ 0.4
SF3B1-204ENST00000414963 FPGT-TNNI3KV9GXZ4 949 aa17.54■□□□□ 0.4
SF3B1-204ENST00000414963 CHRNDQ07001 517 aa17.53■□□□□ 0.4
SF3B1-204ENST00000414963 PLEKHM2Q8IWE5 1019 aa17.53■□□□□ 0.4
SF3B1-204ENST00000414963 ANKRD2Q9GZV1 360 aa17.53■□□□□ 0.4
SF3B1-204ENST00000414963 OSBPL3Q9H4L5 887 aa17.53■□□□□ 0.4
SF3B1-204ENST00000414963 KIF13BQ9NQT8 1826 aa17.52■□□□□ 0.4
SF3B1-204ENST00000414963 AACSQ86V21 672 aa17.52■□□□□ 0.4
SF3B1-204ENST00000414963 SKAP1Q86WV1 359 aa17.52■□□□□ 0.4
SF3B1-204ENST00000414963 SP8Q8IXZ3 490 aa17.52■□□□□ 0.4
SF3B1-204ENST00000414963 CNKSR1Q969H4 720 aa17.52■□□□□ 0.4
SF3B1-204ENST00000414963 IFIT2P09913 472 aaKnown RBP17.51■□□□□ 0.39
SF3B1-204ENST00000414963 FGFR2P21802 821 aa17.51■□□□□ 0.39
SF3B1-204ENST00000414963 KCNA3P22001 575 aa17.51■□□□□ 0.39
SF3B1-204ENST00000414963 CHRNA5P30532 468 aa17.51■□□□□ 0.39
SF3B1-204ENST00000414963 PUM3Q15397 648 aaKnown RBP17.51■□□□□ 0.39
SF3B1-204ENST00000414963 OTUD7AQ8TE49 926 aaPredicted RBP17.51■□□□□ 0.39
SF3B1-204ENST00000414963 AOX1Q06278 1338 aa17.5■□□□□ 0.39
SF3B1-204ENST00000414963 COL11A2P13942 1736 aaPredicted RBP17.5■□□□□ 0.39
SF3B1-204ENST00000414963 MX1P20591 662 aa17.5■□□□□ 0.39
SF3B1-204ENST00000414963 PDE1AP54750 535 aa17.5■□□□□ 0.39
SF3B1-204ENST00000414963 ATP2B3Q16720 1220 aa17.5■□□□□ 0.39
SF3B1-204ENST00000414963 LPIN2Q92539 896 aa17.5■□□□□ 0.39
SF3B1-204ENST00000414963 ZNF622Q969S3 477 aaKnown RBP eCLIP17.5■□□□□ 0.394e-7■■■□□ 15.1
SF3B1-204ENST00000414963 ATP6V0A2Q9Y487 856 aa17.5■□□□□ 0.39
SF3B1-204ENST00000414963 ZNF609O15014 1411 aa17.49■□□□□ 0.39
SF3B1-204ENST00000414963 A0A1B0GUL7 405 aa17.49■□□□□ 0.39
SF3B1-204ENST00000414963 PPEF1O14829 653 aaPredicted RBP17.49■□□□□ 0.39
SF3B1-204ENST00000414963 DPEP1P16444 411 aa17.49■□□□□ 0.39
SF3B1-204ENST00000414963 RGS3P49796 1198 aa17.49■□□□□ 0.39
SF3B1-204ENST00000414963 TIMM10P62072 90 aa17.49■□□□□ 0.39
SF3B1-204ENST00000414963 UBE4AQ14139 1066 aa17.49■□□□□ 0.39
SF3B1-204ENST00000414963 HELBQ8NG08 1087 aaPredicted RBP17.49■□□□□ 0.39
SF3B1-204ENST00000414963 CCDC8Q9H0W5 538 aaPredicted RBP17.49■□□□□ 0.39
SF3B1-204ENST00000414963 PODXL2Q9NZ53 605 aa17.49■□□□□ 0.39
SF3B1-204ENST00000414963 DBNLQ9UJU6 430 aaKnown RBP17.49■□□□□ 0.39
SF3B1-204ENST00000414963 TAF1P21675 1872 aa17.49■□□□□ 0.39
SF3B1-204ENST00000414963 TTC41PQ6P2S7 1318 aa17.48■□□□□ 0.39
SF3B1-204ENST00000414963 TAF5LO75529 589 aa17.48■□□□□ 0.39
SF3B1-204ENST00000414963 C7orf43Q8WVR3 580 aa17.48■□□□□ 0.39
SF3B1-204ENST00000414963 LEMD3Q9Y2U8 911 aa17.48■□□□□ 0.39
SF3B1-204ENST00000414963 XDHP47989 1333 aa17.47■□□□□ 0.39
SF3B1-204ENST00000414963 A0A0G2JLW4 131 aa17.47■□□□□ 0.39
SF3B1-204ENST00000414963 PRPF40BQ6NWY9 871 aaKnown RBP17.47■□□□□ 0.39
SF3B1-204ENST00000414963 TTLL6Q8N841 843 aa17.47■□□□□ 0.39
SF3B1-204ENST00000414963 GPATCH3Q96I76 525 aa17.47■□□□□ 0.39
SF3B1-204ENST00000414963 DBNDD2Q9BQY9 259 aa17.47■□□□□ 0.39
SF3B1-204ENST00000414963 ECHDC1Q9NTX5 307 aa17.47■□□□□ 0.39
SF3B1-204ENST00000414963 TLR7Q9NYK1 1049 aaKnown RBP17.47■□□□□ 0.39
SF3B1-204ENST00000414963 SLC5A1P13866 664 aa17.46■□□□□ 0.39
SF3B1-204ENST00000414963 CC2D2BQ6DHV5 1058 aa17.46■□□□□ 0.39
SF3B1-204ENST00000414963 C15orf52Q6ZUT6 534 aaKnown RBP17.46■□□□□ 0.39
SF3B1-204ENST00000414963 XAGE2Q96GT9 111 aa17.46■□□□□ 0.39
SF3B1-204ENST00000414963 NEUROD6Q96NK8 337 aa17.46■□□□□ 0.39
SF3B1-204ENST00000414963 ZBTB22O15209 634 aa17.45■□□□□ 0.38
SF3B1-204ENST00000414963 IFIT1P09914 478 aaKnown RBP17.45■□□□□ 0.38
SF3B1-204ENST00000414963 ATP5JP18859 108 aa17.45■□□□□ 0.38
SF3B1-204ENST00000414963 GPSM2P81274 684 aa17.45■□□□□ 0.38
SF3B1-204ENST00000414963 GRIPAP1Q4V328 841 aa17.45■□□□□ 0.38
SF3B1-204ENST00000414963 PI4K2BQ8TCG2 481 aa17.45■□□□□ 0.38
SF3B1-204ENST00000414963 ZNF512BQ96KM6 892 aaPredicted RBP17.45■□□□□ 0.38
SF3B1-204ENST00000414963 BCL11AQ9H165 835 aa17.45■□□□□ 0.38
SF3B1-204ENST00000414963 TMX4Q9H1E5 349 aaPredicted RBP17.45■□□□□ 0.38
SF3B1-204ENST00000414963 PIM2Q9P1W9 311 aa17.45■□□□□ 0.38
SF3B1-204ENST00000414963 ANKIB1Q9P2G1 1089 aa17.45■□□□□ 0.38
SF3B1-204ENST00000414963 DLEC1Q9Y238 1755 aa17.45■□□□□ 0.38
SF3B1-204ENST00000414963 ZNF804BA4D1E1 1349 aa17.45■□□□□ 0.38
SF3B1-204ENST00000414963 SPEF2Q9C093 1822 aa17.44■□□□□ 0.38
SF3B1-204ENST00000414963 LRRC37AA6NMS7 1700 aa17.44■□□□□ 0.38
SF3B1-204ENST00000414963 KIAA1551Q9HCM1 1747 aa17.44■□□□□ 0.38
SF3B1-204ENST00000414963 ERC2O15083 957 aa17.44■□□□□ 0.38
SF3B1-204ENST00000414963 GLRX3O76003 335 aaKnown RBP17.44■□□□□ 0.38
SF3B1-204ENST00000414963 ATP2B4P23634 1241 aa17.44■□□□□ 0.38
SF3B1-204ENST00000414963 ADORA1P30542 326 aa17.44■□□□□ 0.38
SF3B1-204ENST00000414963 BMP2KLQ5H9B9 411 aa17.44■□□□□ 0.38
SF3B1-204ENST00000414963 TTC22Q5TAA0 569 aa17.44■□□□□ 0.38
SF3B1-204ENST00000414963 IRS2Q9Y4H2 1338 aa17.44■□□□□ 0.38
SF3B1-204ENST00000414963 SNAP23O00161 211 aa17.43■□□□□ 0.38
SF3B1-204ENST00000414963 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.43■□□□□ 0.38
SF3B1-204ENST00000414963 NSFL1CQ9UNZ2 370 aaKnown RBP17.43■□□□□ 0.38
SF3B1-204ENST00000414963 WTIPA6NIX2 430 aaPredicted RBP17.42■□□□□ 0.38
SF3B1-204ENST00000414963 KCNJ4P48050 445 aa17.42■□□□□ 0.38
SF3B1-204ENST00000414963 CCDC158Q5M9N0 1113 aa17.42■□□□□ 0.38
SF3B1-204ENST00000414963 GORABQ5T7V8 394 aa17.42■□□□□ 0.38
SF3B1-204ENST00000414963 SLC51AQ86UW1 340 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms