RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 ARMC5Q96C12 935 aa11.28□□□□□ -0.6
SNHG3-201ENST00000413987 PLCH1Q4KWH8 1693 aa11.28□□□□□ -0.6
SNHG3-201ENST00000413987 CRB1P82279 1406 aa11.28□□□□□ -0.6
SNHG3-201ENST00000413987 ABCC6O95255 1503 aa11.28□□□□□ -0.6
SNHG3-201ENST00000413987 GIGYF1O75420 1035 aaPredicted RBP11.28□□□□□ -0.6
SNHG3-201ENST00000413987 TATP17735 454 aaPredicted RBP11.28□□□□□ -0.6
SNHG3-201ENST00000413987 PUS10Q3MIT2 529 aaKnown RBP11.28□□□□□ -0.6
SNHG3-201ENST00000413987 ZNF512BQ96KM6 892 aaPredicted RBP11.28□□□□□ -0.6
SNHG3-201ENST00000413987 NAP1L4Q99733 375 aaKnown RBP11.28□□□□□ -0.6
SNHG3-201ENST00000413987 COL14A1Q05707 1796 aaKnown RBP11.27□□□□□ -0.6
SNHG3-201ENST00000413987 ZNF853P0CG23 659 aa11.27□□□□□ -0.61
SNHG3-201ENST00000413987 DHX8Q14562 1220 aaKnown RBP11.27□□□□□ -0.61
SNHG3-201ENST00000413987 PLEKHO1Q53GL0 409 aaPredicted RBP11.27□□□□□ -0.61
SNHG3-201ENST00000413987 C8orf58Q8NAV2 365 aa11.27□□□□□ -0.61
SNHG3-201ENST00000413987 FAM212AQ96EL1 285 aa11.27□□□□□ -0.61
SNHG3-201ENST00000413987 MRPL42Q9Y6G3 142 aaKnown RBP11.27□□□□□ -0.61
SNHG3-201ENST00000413987 JCADQ9P266 1359 aa11.27□□□□□ -0.61
SNHG3-201ENST00000413987 CYP27B1O15528 508 aa11.27□□□□□ -0.61
SNHG3-201ENST00000413987 CD53P19397 219 aa11.27□□□□□ -0.61
SNHG3-201ENST00000413987 CCDC173Q0VFZ6 552 aa11.27□□□□□ -0.61
SNHG3-201ENST00000413987 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.27□□□□□ -0.61
SNHG3-201ENST00000413987 CEP120Q8N960 986 aa11.27□□□□□ -0.61
SNHG3-201ENST00000413987 CEP63Q96MT8 703 aa11.27□□□□□ -0.61
SNHG3-201ENST00000413987 EPAS1Q99814 870 aa11.27□□□□□ -0.61
SNHG3-201ENST00000413987 BIN2Q9UBW5 565 aaPredicted RBP11.27□□□□□ -0.61
SNHG3-201ENST00000413987 TNNQ9UQP3 1299 aa11.27□□□□□ -0.61
SNHG3-201ENST00000413987 ERBB4Q15303 1308 aa11.27□□□□□ -0.61
SNHG3-201ENST00000413987 SCP2P22307 547 aa11.26□□□□□ -0.61
SNHG3-201ENST00000413987 UBE4AQ14139 1066 aa11.26□□□□□ -0.61
SNHG3-201ENST00000413987 C1orf141Q5JVX7 400 aa11.26□□□□□ -0.61
SNHG3-201ENST00000413987 KIAA1211Q6ZU35 1233 aa11.26□□□□□ -0.61
SNHG3-201ENST00000413987 OTUD6BQ8N6M0 293 aa11.26□□□□□ -0.61
SNHG3-201ENST00000413987 ANP32BQ92688 251 aaKnown RBP11.26□□□□□ -0.61
SNHG3-201ENST00000413987 CARD10Q9BWT7 1032 aa11.26□□□□□ -0.61
SNHG3-201ENST00000413987 IL16Q14005 1332 aa11.26□□□□□ -0.61
SNHG3-201ENST00000413987 GNAI1P63096 354 aa11.25□□□□□ -0.61
SNHG3-201ENST00000413987 MAP9Q49MG5 647 aa11.25□□□□□ -0.61
SNHG3-201ENST00000413987 TMEM259Q4ZIN3 620 aa11.25□□□□□ -0.61
SNHG3-201ENST00000413987 MTERF4Q7Z6M4 381 aaKnown RBP11.25□□□□□ -0.61
SNHG3-201ENST00000413987 HSCBQ8IWL3 235 aa11.25□□□□□ -0.61
SNHG3-201ENST00000413987 ATL2Q8NHH9 583 aa11.25□□□□□ -0.61
SNHG3-201ENST00000413987 DDX54Q8TDD1 881 aaKnown RBP11.25□□□□□ -0.61
SNHG3-201ENST00000413987 MKL1Q969V6 931 aa11.25□□□□□ -0.61
SNHG3-201ENST00000413987 FEZ2Q9UHY8 353 aaPredicted RBP11.25□□□□□ -0.61
SNHG3-201ENST00000413987 TSPYL4Q9UJ04 414 aa11.25□□□□□ -0.61
SNHG3-201ENST00000413987 PDZRN3Q9UPQ7 1066 aa11.25□□□□□ -0.61
SNHG3-201ENST00000413987 KCNQ3O43525 872 aa11.25□□□□□ -0.61
SNHG3-201ENST00000413987 OFD1O75665 1012 aa11.25□□□□□ -0.61
SNHG3-201ENST00000413987 RARSP54136 660 aaKnown RBP11.25□□□□□ -0.61
SNHG3-201ENST00000413987 AKAP4Q5JQC9 854 aa11.25□□□□□ -0.61
SNHG3-201ENST00000413987 NGLY1Q96IV0 654 aa11.25□□□□□ -0.61
SNHG3-201ENST00000413987 GBP4Q96PP9 640 aa11.25□□□□□ -0.61
SNHG3-201ENST00000413987 RWDD1Q9H446 243 aaPredicted RBP11.25□□□□□ -0.61
SNHG3-201ENST00000413987 PRM3Q9NNZ6 103 aa11.25□□□□□ -0.61
SNHG3-201ENST00000413987 OVOS2A0A0G2JMS6 1433 aa11.24□□□□□ -0.61
SNHG3-201ENST00000413987 KDM6AO15550 1401 aaPredicted RBP11.24□□□□□ -0.61
SNHG3-201ENST00000413987 CHL1O00533 1208 aa11.24□□□□□ -0.61
SNHG3-201ENST00000413987 IL2RBP14784 551 aa11.24□□□□□ -0.61
SNHG3-201ENST00000413987 PHKG2P15735 406 aa11.24□□□□□ -0.61
SNHG3-201ENST00000413987 AMOTQ4VCS5 1084 aa11.24□□□□□ -0.61
SNHG3-201ENST00000413987 ZSCAN30Q86W11 494 aa11.24□□□□□ -0.61
SNHG3-201ENST00000413987 SLC43A3Q8NBI5 491 aa11.24□□□□□ -0.61
SNHG3-201ENST00000413987 C22orf23Q9BZE7 217 aa11.24□□□□□ -0.61
SNHG3-201ENST00000413987 HDAC5Q9UQL6 1122 aa11.24□□□□□ -0.61
SNHG3-201ENST00000413987 LRRC37A3O60309 1634 aa11.24□□□□□ -0.61
SNHG3-201ENST00000413987 SERPINB4P48594 390 aa11.24□□□□□ -0.61
SNHG3-201ENST00000413987 PPP1R9BQ96SB3 815 aa11.24□□□□□ -0.61
SNHG3-201ENST00000413987 RSPH9Q9H1X1 276 aaPredicted RBP11.24□□□□□ -0.61
SNHG3-201ENST00000413987 TFIP11Q9UBB9 837 aaKnown RBP11.24□□□□□ -0.61
SNHG3-201ENST00000413987 NRAPQ86VF7 1730 aa11.23□□□□□ -0.61
SNHG3-201ENST00000413987 RNMTO43148 476 aaKnown RBP11.23□□□□□ -0.61
SNHG3-201ENST00000413987 SSH1Q8WYL5 1049 aa11.23□□□□□ -0.61
SNHG3-201ENST00000413987 GEMIN8Q9NWZ8 242 aaKnown RBP11.23□□□□□ -0.61
SNHG3-201ENST00000413987 CEMIPQ8WUJ3 1361 aa11.23□□□□□ -0.61
SNHG3-201ENST00000413987 MSNP26038 577 aaKnown RBP11.23□□□□□ -0.61
SNHG3-201ENST00000413987 MAN1A1P33908 653 aa11.23□□□□□ -0.61
SNHG3-201ENST00000413987 RBL2Q08999 1139 aa11.23□□□□□ -0.61
SNHG3-201ENST00000413987 ENOX2Q16206 610 aaKnown RBP11.23□□□□□ -0.61
SNHG3-201ENST00000413987 KLF15Q9UIH9 416 aa11.23□□□□□ -0.61
SNHG3-201ENST00000413987 SPG7Q9UQ90 795 aa11.23□□□□□ -0.61
SNHG3-201ENST00000413987 VDRP11473 427 aa11.22□□□□□ -0.61
SNHG3-201ENST00000413987 SLC39A6Q13433 755 aa11.22□□□□□ -0.61
SNHG3-201ENST00000413987 TWISTNBQ3B726 338 aaPredicted RBP11.22□□□□□ -0.61
SNHG3-201ENST00000413987 HS1BP3Q53T59 392 aa11.22□□□□□ -0.61
SNHG3-201ENST00000413987 PRDM4Q9UKN5 801 aa11.22□□□□□ -0.61
SNHG3-201ENST00000413987 CTDP1Q9Y5B0 961 aaPredicted RBP11.22□□□□□ -0.61
SNHG3-201ENST00000413987 SLIT2O94813 1529 aa11.22□□□□□ -0.61
SNHG3-201ENST00000413987 PKD1L3Q7Z443 1732 aa11.22□□□□□ -0.61
SNHG3-201ENST00000413987 SHANK3Q9BYB0 1731 aa11.22□□□□□ -0.61
SNHG3-201ENST00000413987 VAMP4O75379 141 aa11.21□□□□□ -0.61
SNHG3-201ENST00000413987 TEFQ10587 303 aa11.21□□□□□ -0.61
SNHG3-201ENST00000413987 MEX3CQ5U5Q3 659 aaKnown RBP11.21□□□□□ -0.61
SNHG3-201ENST00000413987 NFATC2IPQ8NCF5 419 aa11.21□□□□□ -0.61
SNHG3-201ENST00000413987 CAPN10Q9HC96 672 aa11.21□□□□□ -0.61
SNHG3-201ENST00000413987 SMC4Q9NTJ3 1288 aa11.21□□□□□ -0.61
SNHG3-201ENST00000413987 PARP4Q9UKK3 1724 aaKnown RBP11.21□□□□□ -0.61
SNHG3-201ENST00000413987 BCL9LQ86UU0 1499 aa11.21□□□□□ -0.61
SNHG3-201ENST00000413987 TAF7Q15545 349 aaPredicted RBP11.21□□□□□ -0.62
SNHG3-201ENST00000413987 IFNL2Q8IZJ0 200 aa11.21□□□□□ -0.62
SNHG3-201ENST00000413987 ENOX1Q8TC92 643 aaKnown RBP11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms