RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 SEC31BQ9NQW1 1179 aa8.16□□□□□ -1.1
VPS41-204ENST00000413141 COL11A2P13942 1736 aaPredicted RBP8.15□□□□□ -1.1
VPS41-204ENST00000413141 NPHP1O15259 732 aa8.15□□□□□ -1.1
VPS41-204ENST00000413141 SERPINB2P05120 415 aa8.15□□□□□ -1.1
VPS41-204ENST00000413141 ATXN8OSP0DMR3 200 aa8.15□□□□□ -1.1
VPS41-204ENST00000413141 ST5P78524 1137 aa8.15□□□□□ -1.1
VPS41-204ENST00000413141 LDHAL6AQ6ZMR3 332 aa8.15□□□□□ -1.1
VPS41-204ENST00000413141 CCDC125Q86Z20 511 aa8.15□□□□□ -1.1
VPS41-204ENST00000413141 NLGN1Q8N2Q7 840 aa8.15□□□□□ -1.1
VPS41-204ENST00000413141 CCDC24Q8N4L8 307 aa8.15□□□□□ -1.1
VPS41-204ENST00000413141 VGLL2Q8N8G2 317 aa8.15□□□□□ -1.1
VPS41-204ENST00000413141 CDC5LQ99459 802 aaKnown RBP8.15□□□□□ -1.1
VPS41-204ENST00000413141 CCDC8Q9H0W5 538 aaPredicted RBP8.15□□□□□ -1.1
VPS41-204ENST00000413141 ECHDC1Q9NTX5 307 aa8.15□□□□□ -1.1
VPS41-204ENST00000413141 ZNF219Q9P2Y4 722 aaPredicted RBP8.15□□□□□ -1.1
VPS41-204ENST00000413141 DBNLQ9UJU6 430 aaKnown RBP8.15□□□□□ -1.1
VPS41-204ENST00000413141 RIPOR2Q9Y4F9 1068 aa8.15□□□□□ -1.1
VPS41-204ENST00000413141 MROH5Q6ZUA9 1318 aa8.14□□□□□ -1.11
VPS41-204ENST00000413141 AK9Q5TCS8 1911 aa8.14□□□□□ -1.11
VPS41-204ENST00000413141 ERC2O15083 957 aa8.14□□□□□ -1.11
VPS41-204ENST00000413141 CDC45O75419 566 aa8.14□□□□□ -1.11
VPS41-204ENST00000413141 GLRX3O76003 335 aaKnown RBP8.14□□□□□ -1.11
VPS41-204ENST00000413141 SDSP20132 328 aa8.14□□□□□ -1.11
VPS41-204ENST00000413141 IGHMBP2P38935 993 aaKnown RBP8.14□□□□□ -1.11
VPS41-204ENST00000413141 METTL24Q5JXM2 366 aa8.14□□□□□ -1.11
VPS41-204ENST00000413141 NLRP3Q96P20 1036 aa8.14□□□□□ -1.11
VPS41-204ENST00000413141 DBNDD2Q9BQY9 259 aa8.14□□□□□ -1.11
VPS41-204ENST00000413141 CNNM1Q9NRU3 951 aa8.14□□□□□ -1.11
VPS41-204ENST00000413141 CEP126Q9P2H0 1117 aa8.14□□□□□ -1.11
VPS41-204ENST00000413141 LRRC37AA6NMS7 1700 aa8.14□□□□□ -1.11
VPS41-204ENST00000413141 TAF1P21675 1872 aa8.13□□□□□ -1.11
VPS41-204ENST00000413141 A0A1B0GUL7 405 aa8.13□□□□□ -1.11
VPS41-204ENST00000413141 MMP10P09238 476 aa8.13□□□□□ -1.11
VPS41-204ENST00000413141 CRY2Q49AN0 593 aa8.13□□□□□ -1.11
VPS41-204ENST00000413141 MSL1Q68DK7 614 aa8.13□□□□□ -1.11
VPS41-204ENST00000413141 TBC1D9Q6ZT07 1266 aa8.13□□□□□ -1.11
VPS41-204ENST00000413141 ANKRD18AQ8IVF6 992 aa8.13□□□□□ -1.11
VPS41-204ENST00000413141 CELF1Q92879 486 aaKnown RBP8.13□□□□□ -1.11
VPS41-204ENST00000413141 MPHOSPH8Q99549 860 aa8.13□□□□□ -1.11
VPS41-204ENST00000413141 AKAP2Q9Y2D5 859 aa8.13□□□□□ -1.11
VPS41-204ENST00000413141 TRIM6-TRIM34B2RNG4 842 aa8.12□□□□□ -1.11
VPS41-204ENST00000413141 PDE8BO95263 885 aa8.12□□□□□ -1.11
VPS41-204ENST00000413141 PUM3Q15397 648 aaKnown RBP8.12□□□□□ -1.11
VPS41-204ENST00000413141 ATP2B3Q16720 1220 aa8.12□□□□□ -1.11
VPS41-204ENST00000413141 DDX46Q7L014 1031 aaKnown RBP8.12□□□□□ -1.11
VPS41-204ENST00000413141 BSDC1Q9NW68 430 aaPredicted RBP8.12□□□□□ -1.11
VPS41-204ENST00000413141 RBM19Q9Y4C8 960 aaKnown RBP8.12□□□□□ -1.11
VPS41-204ENST00000413141 KLRG2A4D1S0 409 aaPredicted RBP8.11□□□□□ -1.11
VPS41-204ENST00000413141 SEC24BO95487 1268 aa8.11□□□□□ -1.11
VPS41-204ENST00000413141 MAP4K4O95819 1239 aaPredicted RBP8.11□□□□□ -1.11
VPS41-204ENST00000413141 ATP5JP18859 108 aa8.11□□□□□ -1.11
VPS41-204ENST00000413141 FGFR2P21802 821 aa8.11□□□□□ -1.11
VPS41-204ENST00000413141 ADORA1P30542 326 aa8.11□□□□□ -1.11
VPS41-204ENST00000413141 TIMM10P62072 90 aa8.11□□□□□ -1.11
VPS41-204ENST00000413141 CHRNDQ07001 517 aa8.11□□□□□ -1.11
VPS41-204ENST00000413141 GRAPQ13588 217 aa8.11□□□□□ -1.11
VPS41-204ENST00000413141 CNTROBQ8N137 903 aa8.11□□□□□ -1.11
VPS41-204ENST00000413141 GRAPLQ8TC17 118 aaPredicted RBP8.11□□□□□ -1.11
VPS41-204ENST00000413141 RILPL2Q969X0 211 aa8.11□□□□□ -1.11
VPS41-204ENST00000413141 XAGE2Q96GT9 111 aa8.11□□□□□ -1.11
VPS41-204ENST00000413141 NEUROD6Q96NK8 337 aa8.11□□□□□ -1.11
VPS41-204ENST00000413141 PARP3Q9Y6F1 533 aa8.11□□□□□ -1.11
VPS41-204ENST00000413141 LTBP1Q14766 1721 aa8.11□□□□□ -1.11
VPS41-204ENST00000413141 C10orf71Q711Q0 1435 aa8.11□□□□□ -1.11
VPS41-204ENST00000413141 RFX7Q2KHR2 1363 aa8.1□□□□□ -1.11
VPS41-204ENST00000413141 DLEC1Q9Y238 1755 aa8.1□□□□□ -1.11
VPS41-204ENST00000413141 TAF5LO75529 589 aa8.1□□□□□ -1.11
VPS41-204ENST00000413141 SLC5A1P13866 664 aa8.1□□□□□ -1.11
VPS41-204ENST00000413141 MFAP1P55081 439 aaKnown RBP8.1□□□□□ -1.11
VPS41-204ENST00000413141 RPS8P62241 208 aaKnown RBP8.1□□□□□ -1.11
VPS41-204ENST00000413141 CASC1Q6TDU7 716 aa8.1□□□□□ -1.11
VPS41-204ENST00000413141 HELBQ8NG08 1087 aaPredicted RBP8.1□□□□□ -1.11
VPS41-204ENST00000413141 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.1□□□□□ -1.11
VPS41-204ENST00000413141 LPIN2Q92539 896 aa8.1□□□□□ -1.11
VPS41-204ENST00000413141 RPGRQ92834 1020 aaKnown RBP8.1□□□□□ -1.11
VPS41-204ENST00000413141 EVI5LQ96CN4 794 aa8.1□□□□□ -1.11
VPS41-204ENST00000413141 HAUS7Q99871 368 aa8.1□□□□□ -1.11
VPS41-204ENST00000413141 BRIP1Q9BX63 1249 aa8.1□□□□□ -1.11
VPS41-204ENST00000413141 PDGFDQ9GZP0 370 aaPredicted RBP8.1□□□□□ -1.11
VPS41-204ENST00000413141 BOLA2Q9H3K6 86 aa8.1□□□□□ -1.11
VPS41-204ENST00000413141 MINPP1Q9UNW1 487 aa8.1□□□□□ -1.11
VPS41-204ENST00000413141 CHMLP26374 656 aa8.09□□□□□ -1.11
VPS41-204ENST00000413141 HOXA10P31260 410 aaPredicted RBP8.09□□□□□ -1.11
VPS41-204ENST00000413141 CCDC158Q5M9N0 1113 aa8.09□□□□□ -1.11
VPS41-204ENST00000413141 TTC39AQ5SRH9 613 aa8.09□□□□□ -1.11
VPS41-204ENST00000413141 GORABQ5T7V8 394 aa8.09□□□□□ -1.11
VPS41-204ENST00000413141 UPF1Q92900 1129 aaKnown RBP eCLIP8.09□□□□□ -1.11
VPS41-204ENST00000413141 RBM17Q96I25 401 aaKnown RBP8.09□□□□□ -1.11
VPS41-204ENST00000413141 UPF2Q9HAU5 1272 aaKnown RBP8.09□□□□□ -1.11
VPS41-204ENST00000413141 KIF13BQ9NQT8 1826 aa8.08□□□□□ -1.12
VPS41-204ENST00000413141 AKAP11Q9UKA4 1901 aa8.08□□□□□ -1.12
VPS41-204ENST00000413141 SNAP23O00161 211 aa8.08□□□□□ -1.12
VPS41-204ENST00000413141 EIF5BO60841 1220 aaKnown RBP8.08□□□□□ -1.12
VPS41-204ENST00000413141 ABCB7O75027 752 aa8.08□□□□□ -1.12
VPS41-204ENST00000413141 IFIT1P09914 478 aaKnown RBP8.08□□□□□ -1.12
VPS41-204ENST00000413141 SRGNP10124 158 aa8.08□□□□□ -1.12
VPS41-204ENST00000413141 ARID4AP29374 1257 aaPredicted RBP8.08□□□□□ -1.12
VPS41-204ENST00000413141 PDE6BP35913 854 aa8.08□□□□□ -1.12
VPS41-204ENST00000413141 CCDC102BQ68D86 513 aa8.08□□□□□ -1.12
VPS41-204ENST00000413141 SLC51AQ86UW1 340 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms