RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 MINPP1Q9UNW1 487 aa26.15■■□□□ 1.78
VSX1-204ENST00000409958 CHMP3Q9Y3E7 222 aa26.15■■□□□ 1.78
VSX1-204ENST00000409958 XDHP47989 1333 aa26.15■■□□□ 1.78
VSX1-204ENST00000409958 MPHOSPH8Q99549 860 aa26.14■■□□□ 1.78
VSX1-204ENST00000409958 GGA1Q9UJY5 639 aa26.14■■□□□ 1.78
VSX1-204ENST00000409958 POTECB2RU33 542 aa26.14■■□□□ 1.77
VSX1-204ENST00000409958 ATF7IPQ6VMQ6 1270 aa26.14■■□□□ 1.77
VSX1-204ENST00000409958 L3MBTL3Q96JM7 780 aaPredicted RBP26.14■■□□□ 1.77
VSX1-204ENST00000409958 ZNRF3Q9ULT6 936 aa26.14■■□□□ 1.77
VSX1-204ENST00000409958 UFL1O94874 794 aa26.13■■□□□ 1.77
VSX1-204ENST00000409958 CCDC57Q2TAC2 916 aa26.13■■□□□ 1.77
VSX1-204ENST00000409958 C16orf71Q8IYS4 520 aaPredicted RBP26.13■■□□□ 1.77
VSX1-204ENST00000409958 GPC2Q8N158 579 aa26.13■■□□□ 1.77
VSX1-204ENST00000409958 FRAT1Q92837 279 aaPredicted RBP26.13■■□□□ 1.77
VSX1-204ENST00000409958 SPEF2Q9C093 1822 aa26.12■■□□□ 1.77
VSX1-204ENST00000409958 TOMM70O94826 608 aa26.12■■□□□ 1.77
VSX1-204ENST00000409958 ATP2B4P23634 1241 aa26.12■■□□□ 1.77
VSX1-204ENST00000409958 RABL6Q3YEC7 729 aaPredicted RBP26.12■■□□□ 1.77
VSX1-204ENST00000409958 INTS3Q68E01 1043 aaKnown RBP26.12■■□□□ 1.77
VSX1-204ENST00000409958 BICC1Q9H694 974 aaKnown RBP26.12■■□□□ 1.77
VSX1-204ENST00000409958 TRIM27P14373 513 aa26.11■■□□□ 1.77
VSX1-204ENST00000409958 ZC3H12CQ9C0D7 883 aaKnown RBP26.11■■□□□ 1.77
VSX1-204ENST00000409958 RIMBP2O15034 1052 aa26.1■■□□□ 1.77
VSX1-204ENST00000409958 ANKRD44Q8N8A2 993 aa26.1■■□□□ 1.77
VSX1-204ENST00000409958 ANKRD2Q9GZV1 360 aa26.1■■□□□ 1.77
VSX1-204ENST00000409958 IQCA1LA6NCM1 817 aa26.09■■□□□ 1.77
VSX1-204ENST00000409958 TAF7LQ5H9L4 462 aa26.09■■□□□ 1.77
VSX1-204ENST00000409958 ZKSCAN2Q63HK3 967 aa26.09■■□□□ 1.77
VSX1-204ENST00000409958 GPR101Q96P66 508 aaPredicted RBP26.09■■□□□ 1.77
VSX1-204ENST00000409958 UBTFL1P0CB47 393 aaPredicted RBP26.08■■□□□ 1.77
VSX1-204ENST00000409958 CXCL9Q07325 125 aa26.08■■□□□ 1.77
VSX1-204ENST00000409958 RBM46Q8TBY0 533 aaKnown RBP26.08■■□□□ 1.77
VSX1-204ENST00000409958 GJA3Q9Y6H8 435 aa26.08■■□□□ 1.77
VSX1-204ENST00000409958 HDAC5Q9UQL6 1122 aa26.07■■□□□ 1.76
VSX1-204ENST00000409958 LEMD3Q9Y2U8 911 aa26.07■■□□□ 1.76
VSX1-204ENST00000409958 YDJCA8MPS7 323 aa26.06■■□□□ 1.76
VSX1-204ENST00000409958 CHRNDQ07001 517 aa26.06■■□□□ 1.76
VSX1-204ENST00000409958 ZNF594Q96JF6 807 aaPredicted RBP26.06■■□□□ 1.76
VSX1-204ENST00000409958 DBNDD1Q9H9R9 158 aa26.06■■□□□ 1.76
VSX1-204ENST00000409958 SCN4AP35499 1836 aa26.06■■□□□ 1.76
VSX1-204ENST00000409958 TNIP1Q15025 636 aa26.05■■□□□ 1.76
VSX1-204ENST00000409958 CIAPIN1Q6FI81 312 aa26.05■■□□□ 1.76
VSX1-204ENST00000409958 LDHAL6AQ6ZMR3 332 aa26.05■■□□□ 1.76
VSX1-204ENST00000409958 TNNQ9UQP3 1299 aa26.05■■□□□ 1.76
VSX1-204ENST00000409958 ECE2O60344 883 aa26.04■■□□□ 1.76
VSX1-204ENST00000409958 DOK7Q18PE1 504 aa26.04■■□□□ 1.76
VSX1-204ENST00000409958 CLUAP1Q96AJ1 413 aa26.04■■□□□ 1.76
VSX1-204ENST00000409958 HACL1Q9UJ83 578 aa26.04■■□□□ 1.76
VSX1-204ENST00000409958 MED23Q9ULK4 1368 aa26.04■■□□□ 1.76
VSX1-204ENST00000409958 WTIPA6NIX2 430 aaPredicted RBP26.03■■□□□ 1.76
VSX1-204ENST00000409958 RAD17O75943 681 aa26.03■■□□□ 1.76
VSX1-204ENST00000409958 MEIS3Q99687 375 aa26.03■■□□□ 1.76
VSX1-204ENST00000409958 TAF1DQ9H5J8 278 aaPredicted RBP26.03■■□□□ 1.76
VSX1-204ENST00000409958 CNNM1Q9NRU3 951 aa26.03■■□□□ 1.76
VSX1-204ENST00000409958 ZNF804BA4D1E1 1349 aa26.03■■□□□ 1.76
VSX1-204ENST00000409958 G3V3G9 751 aa26.02■■□□□ 1.76
VSX1-204ENST00000409958 DCAF8Q5TAQ9 597 aa26.02■■□□□ 1.76
VSX1-204ENST00000409958 GNAI3P08754 354 aa26.01■■□□□ 1.75
VSX1-204ENST00000409958 SCNN1DP51172 638 aa26.01■■□□□ 1.75
VSX1-204ENST00000409958 FSTL1Q12841 308 aa26.01■■□□□ 1.75
VSX1-204ENST00000409958 LMOD1P29536 600 aaPredicted RBP26■■□□□ 1.75
VSX1-204ENST00000409958 EPHX2P34913 555 aa26■■□□□ 1.75
VSX1-204ENST00000409958 SMC1BQ8NDV3 1235 aa26■■□□□ 1.75
VSX1-204ENST00000409958 KCNJ4P48050 445 aa25.99■■□□□ 1.75
VSX1-204ENST00000409958 TMEM57Q8N5G2 664 aa25.99■■□□□ 1.75
VSX1-204ENST00000409958 HELBQ8NG08 1087 aaPredicted RBP25.99■■□□□ 1.75
VSX1-204ENST00000409958 LRRFIP2Q9Y608 721 aaKnown RBP25.99■■□□□ 1.75
VSX1-204ENST00000409958 PSMD14O00487 310 aa25.98■■□□□ 1.75
VSX1-204ENST00000409958 TAF5LO75529 589 aa25.98■■□□□ 1.75
VSX1-204ENST00000409958 HSPA6P17066 643 aa25.98■■□□□ 1.75
VSX1-204ENST00000409958 PODNQ7Z5L7 613 aa25.98■■□□□ 1.75
VSX1-204ENST00000409958 FTSJ3Q8IY81 847 aaKnown RBP25.98■■□□□ 1.75
VSX1-204ENST00000409958 DZIP1LQ8IYY4 767 aaKnown RBP25.98■■□□□ 1.75
VSX1-204ENST00000409958 PUS3Q9BZE2 481 aaKnown RBP25.98■■□□□ 1.75
VSX1-204ENST00000409958 RIPOR2Q9Y4F9 1068 aa25.98■■□□□ 1.75
VSX1-204ENST00000409958 GMPSP49915 693 aaPredicted RBP25.97■■□□□ 1.75
VSX1-204ENST00000409958 PNMA8AQ86V59 439 aaPredicted RBP25.97■■□□□ 1.75
VSX1-204ENST00000409958 KCNQ5Q9NR82 932 aa25.97■■□□□ 1.75
VSX1-204ENST00000409958 GPRC5DQ9NZD1 345 aa25.97■■□□□ 1.75
VSX1-204ENST00000409958 A0A1B0GUL6 1792 aa25.97■■□□□ 1.75
VSX1-204ENST00000409958 MROH5Q6ZUA9 1318 aa25.96■■□□□ 1.75
VSX1-204ENST00000409958 EPS15P42566 896 aa25.96■■□□□ 1.75
VSX1-204ENST00000409958 RFX5P48382 616 aaPredicted RBP25.96■■□□□ 1.75
VSX1-204ENST00000409958 C15orf52Q6ZUT6 534 aaKnown RBP25.96■■□□□ 1.75
VSX1-204ENST00000409958 TXNRD3Q86VQ6 643 aa25.96■■□□□ 1.75
VSX1-204ENST00000409958 COA1Q9GZY4 146 aa25.96■■□□□ 1.75
VSX1-204ENST00000409958 RCAN3Q9UKA8 241 aa25.96■■□□□ 1.75
VSX1-204ENST00000409958 POTEIP0CG38 1075 aa25.95■■□□□ 1.75
VSX1-204ENST00000409958 POTEJP0CG39 1038 aa25.95■■□□□ 1.75
VSX1-204ENST00000409958 LDHDQ86WU2 507 aa25.95■■□□□ 1.75
VSX1-204ENST00000409958 KLHDC4Q8TBB5 520 aa25.95■■□□□ 1.75
VSX1-204ENST00000409958 SCN9AQ15858 1988 aa25.95■■□□□ 1.74
VSX1-204ENST00000409958 SNAP23O00161 211 aa25.94■■□□□ 1.74
VSX1-204ENST00000409958 PLIN1O60240 522 aa25.94■■□□□ 1.74
VSX1-204ENST00000409958 VIL1P09327 827 aaKnown RBP25.94■■□□□ 1.74
VSX1-204ENST00000409958 KLRK1P26718 216 aa25.94■■□□□ 1.74
VSX1-204ENST00000409958 LRRC24Q50LG9 513 aa25.94■■□□□ 1.74
VSX1-204ENST00000409958 EAPPQ56P03 285 aaPredicted RBP25.94■■□□□ 1.74
VSX1-204ENST00000409958 IRS2Q9Y4H2 1338 aa25.94■■□□□ 1.74
VSX1-204ENST00000409958 RLBP1P12271 317 aa25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms