RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 ZSWIM6Q9HCJ5 1215 aa24.84■■□□□ 1.57
USP39-203ENST00000409470 CHGBP05060 677 aa24.83■■□□□ 1.57
USP39-203ENST00000409470 PARP10Q53GL7 1025 aa24.83■■□□□ 1.57
USP39-203ENST00000409470 PDRG1Q9NUG6 133 aa24.83■■□□□ 1.57
USP39-203ENST00000409470 RIC1Q4ADV7 1423 aa24.83■■□□□ 1.56
USP39-203ENST00000409470 PTMSP20962 102 aa24.83■■□□□ 1.56
USP39-203ENST00000409470 ATP2B3Q16720 1220 aa24.83■■□□□ 1.56
USP39-203ENST00000409470 SEC62Q99442 399 aaKnown RBP24.83■■□□□ 1.56
USP39-203ENST00000409470 LIMCH1Q9UPQ0 1083 aa24.83■■□□□ 1.56
USP39-203ENST00000409470 GOLGA6L22H0YM25 854 aa24.82■■□□□ 1.56
USP39-203ENST00000409470 HCLS1P14317 486 aaPredicted RBP24.82■■□□□ 1.56
USP39-203ENST00000409470 VPS53Q5VIR6 699 aa24.82■■□□□ 1.56
USP39-203ENST00000409470 CCDC129Q6ZRS4 1044 aa24.82■■□□□ 1.56
USP39-203ENST00000409470 CLEC17AQ6ZS10 378 aa24.82■■□□□ 1.56
USP39-203ENST00000409470 NIP7Q9Y221 180 aaKnown RBP eCLIP24.82■■□□□ 1.56
USP39-203ENST00000409470 BAG4O95429 457 aaKnown RBP24.81■■□□□ 1.56
USP39-203ENST00000409470 PSMA5P28066 241 aa24.81■■□□□ 1.56
USP39-203ENST00000409470 FKBP4Q02790 459 aaKnown RBP eCLIP24.81■■□□□ 1.56
USP39-203ENST00000409470 RUFY3Q7L099 469 aa24.81■■□□□ 1.56
USP39-203ENST00000409470 TICAM2Q86XR7 235 aa24.81■■□□□ 1.56
USP39-203ENST00000409470 MEX3CQ5U5Q3 659 aaKnown RBP24.81■■□□□ 1.56
USP39-203ENST00000409470 LINC00116Q8NCU8 138 aa24.81■■□□□ 1.56
USP39-203ENST00000409470 HMG20BQ9P0W2 317 aa24.81■■□□□ 1.56
USP39-203ENST00000409470 ZNF652Q9Y2D9 606 aa24.81■■□□□ 1.56
USP39-203ENST00000409470 COL5A3P25940 1745 aaPredicted RBP24.8■■□□□ 1.56
USP39-203ENST00000409470 LARP6Q9BRS8 491 aaKnown RBP24.79■■□□□ 1.56
USP39-203ENST00000409470 HELLSQ9NRZ9 838 aa24.79■■□□□ 1.56
USP39-203ENST00000409470 SPEF2Q9C093 1822 aa24.79■■□□□ 1.56
USP39-203ENST00000409470 KCNQ4P56696 695 aa24.78■■□□□ 1.56
USP39-203ENST00000409470 USPL1Q5W0Q7 1092 aa24.78■■□□□ 1.56
USP39-203ENST00000409470 U3KPZ7 1027 aaPredicted RBP24.78■■□□□ 1.56
USP39-203ENST00000409470 RPAP1Q9BWH6 1393 aaPredicted RBP24.78■■□□□ 1.56
USP39-203ENST00000409470 HSP90B1P14625 803 aaKnown RBP24.78■■□□□ 1.56
USP39-203ENST00000409470 ZDHHC9Q9Y397 364 aa24.78■■□□□ 1.56
USP39-203ENST00000409470 RNF113AO15541 343 aaKnown RBP24.77■■□□□ 1.56
USP39-203ENST00000409470 LRRFIP1Q32MZ4 808 aaKnown RBP24.77■■□□□ 1.56
USP39-203ENST00000409470 ZMYM1Q5SVZ6 1142 aa24.77■■□□□ 1.56
USP39-203ENST00000409470 PTF1AQ7RTS3 328 aa24.77■■□□□ 1.56
USP39-203ENST00000409470 ZNF831Q5JPB2 1677 aa24.77■■□□□ 1.56
USP39-203ENST00000409470 SLFNL1Q499Z3 407 aa24.76■■□□□ 1.55
USP39-203ENST00000409470 BLOC1S2Q6QNY1 142 aa24.76■■□□□ 1.55
USP39-203ENST00000409470 GZF1Q9H116 711 aaPredicted RBP24.76■■□□□ 1.55
USP39-203ENST00000409470 PDE8BO95263 885 aa24.76■■□□□ 1.55
USP39-203ENST00000409470 NTSR2O95665 410 aa24.76■■□□□ 1.55
USP39-203ENST00000409470 VGLL2Q8N8G2 317 aa24.76■■□□□ 1.55
USP39-203ENST00000409470 CERKQ8TCT0 537 aa24.76■■□□□ 1.55
USP39-203ENST00000409470 SKOR2Q2VWA4 1001 aaPredicted RBP24.75■■□□□ 1.55
USP39-203ENST00000409470 TSGA10IPQ3SY00 556 aa24.75■■□□□ 1.55
USP39-203ENST00000409470 ABCC12Q96J65 1359 aa24.75■■□□□ 1.55
USP39-203ENST00000409470 SCARF1Q14162 830 aa24.74■■□□□ 1.55
USP39-203ENST00000409470 KRT32Q14532 448 aa24.74■■□□□ 1.55
USP39-203ENST00000409470 CCDC152Q4G0S7 254 aa24.74■■□□□ 1.55
USP39-203ENST00000409470 MCTP1Q6DN14 999 aa24.74■■□□□ 1.55
USP39-203ENST00000409470 CLEC4GQ6UXB4 293 aa24.74■■□□□ 1.55
USP39-203ENST00000409470 ZSCAN31Q96LW9 406 aaPredicted RBP24.74■■□□□ 1.55
USP39-203ENST00000409470 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.74■■□□□ 1.55
USP39-203ENST00000409470 TAF6LQ9Y6J9 622 aa24.74■■□□□ 1.55
USP39-203ENST00000409470 MROH5Q6ZUA9 1318 aa24.74■■□□□ 1.55
USP39-203ENST00000409470 CNTNAP4Q9C0A0 1308 aa24.74■■□□□ 1.55
USP39-203ENST00000409470 FAM182BQ5T319 152 aa24.74■■□□□ 1.55
USP39-203ENST00000409470 FOXD4L5Q5VV16 416 aaPredicted RBP24.74■■□□□ 1.55
USP39-203ENST00000409470 FOXD4L4Q8WXT5 416 aaPredicted RBP24.74■■□□□ 1.55
USP39-203ENST00000409470 MPHOSPH8Q99549 860 aa24.74■■□□□ 1.55
USP39-203ENST00000409470 THSD7AQ9UPZ6 1657 aa24.74■■□□□ 1.55
USP39-203ENST00000409470 ZAP70P43403 619 aa24.73■■□□□ 1.55
USP39-203ENST00000409470 SH2B1Q9NRF2 756 aaPredicted RBP24.73■■□□□ 1.55
USP39-203ENST00000409470 BRD1O95696 1058 aa24.72■■□□□ 1.55
USP39-203ENST00000409470 RPS6KB1P23443 525 aa24.72■■□□□ 1.55
USP39-203ENST00000409470 PUM3Q15397 648 aaKnown RBP24.72■■□□□ 1.55
USP39-203ENST00000409470 GJD4Q96KN9 370 aaPredicted RBP24.72■■□□□ 1.55
USP39-203ENST00000409470 SEC31BQ9NQW1 1179 aa24.72■■□□□ 1.55
USP39-203ENST00000409470 BCORQ6W2J9 1755 aa24.72■■□□□ 1.55
USP39-203ENST00000409470 MAST3O60307 1309 aa24.71■■□□□ 1.55
USP39-203ENST00000409470 LARGE1O95461 756 aa24.71■■□□□ 1.55
USP39-203ENST00000409470 ZFYP08048 801 aaPredicted RBP24.71■■□□□ 1.55
USP39-203ENST00000409470 HELBQ8NG08 1087 aaPredicted RBP24.71■■□□□ 1.55
USP39-203ENST00000409470 DSCC1Q9BVC3 393 aa24.71■■□□□ 1.55
USP39-203ENST00000409470 LRP5O75197 1615 aa24.71■■□□□ 1.55
USP39-203ENST00000409470 DDX60Q8IY21 1712 aaKnown RBP24.71■■□□□ 1.55
USP39-203ENST00000409470 ANKRD1Q15327 319 aa24.71■■□□□ 1.55
USP39-203ENST00000409470 BTAF1O14981 1849 aa24.7■■□□□ 1.55
USP39-203ENST00000409470 HSPA1LP34931 641 aa24.7■■□□□ 1.54
USP39-203ENST00000409470 PI16Q6UXB8 463 aa24.7■■□□□ 1.54
USP39-203ENST00000409470 CCDC83Q8IWF9 413 aa24.7■■□□□ 1.54
USP39-203ENST00000409470 LPIN2Q92539 896 aa24.7■■□□□ 1.54
USP39-203ENST00000409470 ZNF512BQ96KM6 892 aaPredicted RBP24.7■■□□□ 1.54
USP39-203ENST00000409470 SMC3Q9UQE7 1217 aa24.7■■□□□ 1.54
USP39-203ENST00000409470 AFF2P51816 1311 aa24.7■■□□□ 1.54
USP39-203ENST00000409470 CYP21A2P08686 494 aa24.69■■□□□ 1.54
USP39-203ENST00000409470 IGHMBP2P38935 993 aaKnown RBP24.69■■□□□ 1.54
USP39-203ENST00000409470 MCAMP43121 646 aa24.69■■□□□ 1.54
USP39-203ENST00000409470 WASHC4Q2M389 1173 aa24.69■■□□□ 1.54
USP39-203ENST00000409470 NEK1Q96PY6 1258 aa24.69■■□□□ 1.54
USP39-203ENST00000409470 M0R2C6 588 aa24.69■■□□□ 1.54
USP39-203ENST00000409470 COL9A3Q14050 684 aaPredicted RBP24.69■■□□□ 1.54
USP39-203ENST00000409470 RC3H1Q5TC82 1133 aaKnown RBP24.69■■□□□ 1.54
USP39-203ENST00000409470 TCEANC2Q96MN5 208 aa24.69■■□□□ 1.54
USP39-203ENST00000409470 NHSQ6T4R5 1651 aa24.69■■□□□ 1.54
USP39-203ENST00000409470 OSBP2Q969R2 916 aa24.68■■□□□ 1.54
USP39-203ENST00000409470 CCNL1Q9UK58 526 aaPredicted RBP24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms