RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 EVI5LQ96CN4 794 aa17.12■□□□□ 0.33
GPNMB-203ENST00000409458 MSH5O43196 834 aa17.11■□□□□ 0.33
GPNMB-203ENST00000409458 DDRGK1Q96HY6 314 aa17.11■□□□□ 0.33
GPNMB-203ENST00000409458 TFCP2L1Q9NZI6 479 aa17.11■□□□□ 0.33
GPNMB-203ENST00000409458 IGHMBP2P38935 993 aaKnown RBP17.1■□□□□ 0.33
GPNMB-203ENST00000409458 ATP2B3Q16720 1220 aa17.1■□□□□ 0.33
GPNMB-203ENST00000409458 MPHOSPH8Q99549 860 aa17.1■□□□□ 0.33
GPNMB-203ENST00000409458 IL25Q9H293 177 aa17.1■□□□□ 0.33
GPNMB-203ENST00000409458 NDUFB9Q9Y6M9 179 aa17.1■□□□□ 0.33
GPNMB-203ENST00000409458 MROH5Q6ZUA9 1318 aa17.1■□□□□ 0.33
GPNMB-203ENST00000409458 EDC3Q96F86 508 aaKnown RBP17.1■□□□□ 0.33
GPNMB-203ENST00000409458 XAGE2Q96GT9 111 aa17.1■□□□□ 0.33
GPNMB-203ENST00000409458 CDC5LQ99459 802 aaKnown RBP17.1■□□□□ 0.33
GPNMB-203ENST00000409458 REC8O95072 547 aa17.09■□□□□ 0.33
GPNMB-203ENST00000409458 PDE8BO95263 885 aa17.09■□□□□ 0.33
GPNMB-203ENST00000409458 CNBD1Q8NA66 436 aa17.09■□□□□ 0.33
GPNMB-203ENST00000409458 NLRP3Q96P20 1036 aa17.09■□□□□ 0.33
GPNMB-203ENST00000409458 HAUS7Q99871 368 aa17.09■□□□□ 0.33
GPNMB-203ENST00000409458 USP26Q9BXU7 913 aa17.09■□□□□ 0.33
GPNMB-203ENST00000409458 NPHP1O15259 732 aa17.08■□□□□ 0.32
GPNMB-203ENST00000409458 TM4SF1P30408 202 aa17.08■□□□□ 0.32
GPNMB-203ENST00000409458 COL23A1Q86Y22 540 aaPredicted RBP17.08■□□□□ 0.32
GPNMB-203ENST00000409458 HELBQ8NG08 1087 aaPredicted RBP17.08■□□□□ 0.32
GPNMB-203ENST00000409458 DNAJC2Q99543 621 aaKnown RBP17.08■□□□□ 0.32
GPNMB-203ENST00000409458 DDR1Q08345 913 aa17.07■□□□□ 0.32
GPNMB-203ENST00000409458 EZH2Q15910 746 aaKnown RBP17.07■□□□□ 0.32
GPNMB-203ENST00000409458 PRR5LQ6MZQ0 368 aa17.07■□□□□ 0.32
GPNMB-203ENST00000409458 ANKRD18AQ8IVF6 992 aa17.07■□□□□ 0.32
GPNMB-203ENST00000409458 FSD1Q9BTV5 496 aa17.07■□□□□ 0.32
GPNMB-203ENST00000409458 DIAPH3Q9NSV4 1193 aa17.07■□□□□ 0.32
GPNMB-203ENST00000409458 PNPLA7Q6ZV29 1317 aa17.07■□□□□ 0.32
GPNMB-203ENST00000409458 SGSM2O43147 1006 aa17.07■□□□□ 0.32
GPNMB-203ENST00000409458 FGFR2P21802 821 aa17.07■□□□□ 0.32
GPNMB-203ENST00000409458 EN1Q05925 392 aaPredicted RBP17.07■□□□□ 0.32
GPNMB-203ENST00000409458 PUM3Q15397 648 aaKnown RBP17.07■□□□□ 0.32
GPNMB-203ENST00000409458 CWC27Q6UX04 472 aaKnown RBP17.07■□□□□ 0.32
GPNMB-203ENST00000409458 CELF1Q92879 486 aaKnown RBP17.07■□□□□ 0.32
GPNMB-203ENST00000409458 CAMKK2Q96RR4 588 aa17.07■□□□□ 0.32
GPNMB-203ENST00000409458 POLRMTO00411 1230 aaKnown RBP17.06■□□□□ 0.32
GPNMB-203ENST00000409458 TAF5LO75529 589 aa17.06■□□□□ 0.32
GPNMB-203ENST00000409458 SERPINB2P05120 415 aa17.06■□□□□ 0.32
GPNMB-203ENST00000409458 IFIT1P09914 478 aaKnown RBP17.06■□□□□ 0.32
GPNMB-203ENST00000409458 CHRNDQ07001 517 aa17.06■□□□□ 0.32
GPNMB-203ENST00000409458 CCDC158Q5M9N0 1113 aa17.06■□□□□ 0.32
GPNMB-203ENST00000409458 TTC39AQ5SRH9 613 aa17.06■□□□□ 0.32
GPNMB-203ENST00000409458 GORABQ5T7V8 394 aa17.06■□□□□ 0.32
GPNMB-203ENST00000409458 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.06■□□□□ 0.32
GPNMB-203ENST00000409458 KIF2CQ99661 725 aa17.06■□□□□ 0.32
GPNMB-203ENST00000409458 RFX7Q2KHR2 1363 aa17.05■□□□□ 0.32
GPNMB-203ENST00000409458 DDX46Q7L014 1031 aaKnown RBP17.05■□□□□ 0.32
GPNMB-203ENST00000409458 ANO8Q9HCE9 1232 aaPredicted RBP17.05■□□□□ 0.32
GPNMB-203ENST00000409458 ANO2Q9NQ90 1003 aa17.05■□□□□ 0.32
GPNMB-203ENST00000409458 QSER1Q2KHR3 1735 aa17.05■□□□□ 0.32
GPNMB-203ENST00000409458 NRXN2Q9P2S2 1712 aa17.05■□□□□ 0.32
GPNMB-203ENST00000409458 SNAP23O00161 211 aa17.04■□□□□ 0.32
GPNMB-203ENST00000409458 HIP1O00291 1037 aa17.04■□□□□ 0.32
GPNMB-203ENST00000409458 FLAD1Q8NFF5 587 aa17.04■□□□□ 0.32
GPNMB-203ENST00000409458 LPIN2Q92539 896 aa17.04■□□□□ 0.32
GPNMB-203ENST00000409458 BSDC1Q9NW68 430 aaPredicted RBP17.04■□□□□ 0.32
GPNMB-203ENST00000409458 PAG1Q9NWQ8 432 aa17.04■□□□□ 0.32
GPNMB-203ENST00000409458 AKAP11Q9UKA4 1901 aa17.04■□□□□ 0.32
GPNMB-203ENST00000409458 GOLIM4O00461 696 aa17.04■□□□□ 0.32
GPNMB-203ENST00000409458 ST5P78524 1137 aa17.04■□□□□ 0.32
GPNMB-203ENST00000409458 NMIQ13287 307 aaPredicted RBP17.04■□□□□ 0.32
GPNMB-203ENST00000409458 SCARF1Q14162 830 aa17.04■□□□□ 0.32
GPNMB-203ENST00000409458 FAM227BQ96M60 508 aa17.04■□□□□ 0.32
GPNMB-203ENST00000409458 SLC5A1P13866 664 aa17.03■□□□□ 0.32
GPNMB-203ENST00000409458 ANKRD31Q8N7Z5 1873 aa17.02■□□□□ 0.32
GPNMB-203ENST00000409458 A0A0D9SFI3 127 aa17.02■□□□□ 0.32
GPNMB-203ENST00000409458 SLC4A3P48751 1232 aa17.02■□□□□ 0.32
GPNMB-203ENST00000409458 KBTBD3Q8NAB2 608 aa17.02■□□□□ 0.32
GPNMB-203ENST00000409458 RUFY2Q8WXA3 655 aa17.02■□□□□ 0.32
GPNMB-203ENST00000409458 RAD50Q92878 1312 aa17.02■□□□□ 0.31
GPNMB-203ENST00000409458 PHKA1P46020 1223 aa17.01■□□□□ 0.31
GPNMB-203ENST00000409458 RPS8P62241 208 aaKnown RBP17.01■□□□□ 0.31
GPNMB-203ENST00000409458 LSG1Q9H089 658 aaKnown RBP17.01■□□□□ 0.31
GPNMB-203ENST00000409458 ANTXR1Q9H6X2 564 aa17.01■□□□□ 0.31
GPNMB-203ENST00000409458 SNRKQ9NRH2 765 aa17.01■□□□□ 0.31
GPNMB-203ENST00000409458 MINPP1Q9UNW1 487 aa17.01■□□□□ 0.31
GPNMB-203ENST00000409458 MED23Q9ULK4 1368 aa17.01■□□□□ 0.31
GPNMB-203ENST00000409458 CHGBP05060 677 aa17.01■□□□□ 0.31
GPNMB-203ENST00000409458 MCAMP43121 646 aa17.01■□□□□ 0.31
GPNMB-203ENST00000409458 FKBP4Q02790 459 aaKnown RBP eCLIP17.01■□□□□ 0.31
GPNMB-203ENST00000409458 CCDC102BQ68D86 513 aa17.01■□□□□ 0.31
GPNMB-203ENST00000409458 PI16Q6UXB8 463 aa17.01■□□□□ 0.31
GPNMB-203ENST00000409458 NLGN1Q8N2Q7 840 aa17.01■□□□□ 0.31
GPNMB-203ENST00000409458 ZNF512BQ96KM6 892 aaPredicted RBP17.01■□□□□ 0.31
GPNMB-203ENST00000409458 ARID4AP29374 1257 aaPredicted RBP17■□□□□ 0.31
GPNMB-203ENST00000409458 ZAP70P43403 619 aa17■□□□□ 0.31
GPNMB-203ENST00000409458 SLC15A2Q16348 729 aa17■□□□□ 0.31
GPNMB-203ENST00000409458 CRY2Q49AN0 593 aa17■□□□□ 0.31
GPNMB-203ENST00000409458 DEFB132Q7Z7B7 95 aa17■□□□□ 0.31
GPNMB-203ENST00000409458 MYH7P12883 1935 aa17■□□□□ 0.31
GPNMB-203ENST00000409458 EPB41L2O43491 1005 aaKnown RBP16.99■□□□□ 0.31
GPNMB-203ENST00000409458 SF3B2Q13435 895 aaKnown RBP16.99■□□□□ 0.31
GPNMB-203ENST00000409458 GRAPQ13588 217 aa16.99■□□□□ 0.31
GPNMB-203ENST00000409458 MSL1Q68DK7 614 aa16.99■□□□□ 0.31
GPNMB-203ENST00000409458 GRAPLQ8TC17 118 aaPredicted RBP16.99■□□□□ 0.31
GPNMB-203ENST00000409458 TBC1D2Q9BYX2 928 aa16.99■□□□□ 0.31
GPNMB-203ENST00000409458 STK32BQ9NY57 414 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms