RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 SPEF2Q9C093 1822 aa14.35□□□□□ -0.11
SKA3-203ENST00000400018 MPHOSPH8Q99549 860 aa14.35□□□□□ -0.11
SKA3-203ENST00000400018 DDX60Q8IY21 1712 aaKnown RBP14.35□□□□□ -0.11
SKA3-203ENST00000400018 CHRNA5P30532 468 aa14.35□□□□□ -0.11
SKA3-203ENST00000400018 TBC1D9Q6ZT07 1266 aa14.35□□□□□ -0.11
SKA3-203ENST00000400018 STK32BQ9NY57 414 aa14.35□□□□□ -0.11
SKA3-203ENST00000400018 RIPOR2Q9Y4F9 1068 aa14.35□□□□□ -0.11
SKA3-203ENST00000400018 TNRC6CQ9HCJ0 1690 aaKnown RBP14.34□□□□□ -0.11
SKA3-203ENST00000400018 NLRP3Q96P20 1036 aa14.34□□□□□ -0.11
SKA3-203ENST00000400018 ANTXR1Q9H6X2 564 aa14.34□□□□□ -0.11
SKA3-203ENST00000400018 RAB11FIP3O75154 756 aa14.34□□□□□ -0.11
SKA3-203ENST00000400018 DDX46Q7L014 1031 aaKnown RBP14.34□□□□□ -0.11
SKA3-203ENST00000400018 PLA2G12BQ9BX93 195 aa14.34□□□□□ -0.11
SKA3-203ENST00000400018 SCN7AQ01118 1682 aa14.34□□□□□ -0.11
SKA3-203ENST00000400018 SLC4A3P48751 1232 aa14.33□□□□□ -0.12
SKA3-203ENST00000400018 CCDC152Q4G0S7 254 aa14.33□□□□□ -0.12
SKA3-203ENST00000400018 UPF1Q92900 1129 aaKnown RBP eCLIP14.33□□□□□ -0.12
SKA3-203ENST00000400018 CEP126Q9P2H0 1117 aa14.33□□□□□ -0.12
SKA3-203ENST00000400018 EIF5BO60841 1220 aaKnown RBP14.33□□□□□ -0.12
SKA3-203ENST00000400018 CHRNDQ07001 517 aa14.32□□□□□ -0.12
SKA3-203ENST00000400018 TXNRD3Q86VQ6 643 aa14.32□□□□□ -0.12
SKA3-203ENST00000400018 CICQ96RK0 1608 aaPredicted RBP14.32□□□□□ -0.12
SKA3-203ENST00000400018 RIC1Q4ADV7 1423 aa14.32□□□□□ -0.12
SKA3-203ENST00000400018 XAGE2Q96GT9 111 aa14.32□□□□□ -0.12
SKA3-203ENST00000400018 ZNF831Q5JPB2 1677 aa14.31□□□□□ -0.12
SKA3-203ENST00000400018 FKBP4Q02790 459 aaKnown RBP eCLIP14.31□□□□□ -0.12
SKA3-203ENST00000400018 MYH3P11055 1940 aa14.31□□□□□ -0.12
SKA3-203ENST00000400018 ADRA2BP18089 450 aa14.31□□□□□ -0.12
SKA3-203ENST00000400018 PHKA1P46020 1223 aa14.31□□□□□ -0.12
SKA3-203ENST00000400018 GYG1P46976 350 aa14.31□□□□□ -0.12
SKA3-203ENST00000400018 BCAMP50895 628 aa14.31□□□□□ -0.12
SKA3-203ENST00000400018 HDAC5Q9UQL6 1122 aa14.31□□□□□ -0.12
SKA3-203ENST00000400018 IL15P40933 162 aaPredicted RBP14.3□□□□□ -0.12
SKA3-203ENST00000400018 HSP90AB4PQ58FF6 505 aa14.3□□□□□ -0.12
SKA3-203ENST00000400018 BMP2KLQ5H9B9 411 aa14.3□□□□□ -0.12
SKA3-203ENST00000400018 GORABQ5T7V8 394 aa14.3□□□□□ -0.12
SKA3-203ENST00000400018 ANKRD18AQ8IVF6 992 aa14.3□□□□□ -0.12
SKA3-203ENST00000400018 ZNF622Q969S3 477 aaKnown RBP eCLIP14.3□□□□□ -0.12
SKA3-203ENST00000400018 SEC62Q99442 399 aaKnown RBP14.3□□□□□ -0.12
SKA3-203ENST00000400018 ECHDC1Q9NTX5 307 aa14.3□□□□□ -0.12
SKA3-203ENST00000400018 IGHMBP2P38935 993 aaKnown RBP14.29□□□□□ -0.12
SKA3-203ENST00000400018 ATP2B3Q16720 1220 aa14.29□□□□□ -0.12
SKA3-203ENST00000400018 GOLIM4O00461 696 aa14.29□□□□□ -0.12
SKA3-203ENST00000400018 CWC27Q6UX04 472 aaKnown RBP14.29□□□□□ -0.12
SKA3-203ENST00000400018 VGLL2Q8N8G2 317 aa14.29□□□□□ -0.12
SKA3-203ENST00000400018 NYXQ9GZU5 481 aa14.29□□□□□ -0.12
SKA3-203ENST00000400018 MINPP1Q9UNW1 487 aa14.29□□□□□ -0.12
SKA3-203ENST00000400018 CASZ1Q86V15 1759 aa14.29□□□□□ -0.12
SKA3-203ENST00000400018 RPS8P62241 208 aaKnown RBP14.28□□□□□ -0.12
SKA3-203ENST00000400018 ERC1Q8IUD2 1116 aa14.28□□□□□ -0.12
SKA3-203ENST00000400018 FAM227BQ96M60 508 aa14.28□□□□□ -0.12
SKA3-203ENST00000400018 PDE8BO95263 885 aa14.28□□□□□ -0.12
SKA3-203ENST00000400018 CCDC129Q6ZRS4 1044 aa14.28□□□□□ -0.12
SKA3-203ENST00000400018 PARP3Q9Y6F1 533 aa14.28□□□□□ -0.12
SKA3-203ENST00000400018 LAMB2P55268 1798 aa14.27□□□□□ -0.12
SKA3-203ENST00000400018 ST5P78524 1137 aa14.27□□□□□ -0.12
SKA3-203ENST00000400018 SF3B3Q15393 1217 aaKnown RBP14.27□□□□□ -0.12
SKA3-203ENST00000400018 NLGN1Q8N2Q7 840 aa14.27□□□□□ -0.12
SKA3-203ENST00000400018 RPGRQ92834 1020 aaKnown RBP14.27□□□□□ -0.12
SKA3-203ENST00000400018 NSFL1CQ9UNZ2 370 aaKnown RBP14.27□□□□□ -0.12
SKA3-203ENST00000400018 A0A0G2JLW4 131 aa14.27□□□□□ -0.13
SKA3-203ENST00000400018 ZAP70P43403 619 aa14.27□□□□□ -0.13
SKA3-203ENST00000400018 SLC10A5Q5PT55 438 aa14.27□□□□□ -0.13
SKA3-203ENST00000400018 STAP2Q9UGK3 403 aa14.27□□□□□ -0.13
SKA3-203ENST00000400018 DTNBO60941 627 aa14.26□□□□□ -0.13
SKA3-203ENST00000400018 PKNOX2Q96KN3 472 aa14.26□□□□□ -0.13
SKA3-203ENST00000400018 ANKIB1Q9P2G1 1089 aa14.26□□□□□ -0.13
SKA3-203ENST00000400018 MCAMP43121 646 aa14.26□□□□□ -0.13
SKA3-203ENST00000400018 ZNF609O15014 1411 aa14.25□□□□□ -0.13
SKA3-203ENST00000400018 RIMBP2O15034 1052 aa14.25□□□□□ -0.13
SKA3-203ENST00000400018 IFIT1P09914 478 aaKnown RBP14.25□□□□□ -0.13
SKA3-203ENST00000400018 COL9A3Q14050 684 aaPredicted RBP14.25□□□□□ -0.13
SKA3-203ENST00000400018 TTC39AQ5SRH9 613 aa14.25□□□□□ -0.13
SKA3-203ENST00000400018 CCDC102BQ68D86 513 aa14.25□□□□□ -0.13
SKA3-203ENST00000400018 FSD1Q9BTV5 496 aa14.25□□□□□ -0.13
SKA3-203ENST00000400018 OSBPL3Q9H4L5 887 aa14.25□□□□□ -0.13
SKA3-203ENST00000400018 CIAO1O76071 339 aa14.24□□□□□ -0.13
SKA3-203ENST00000400018 CDC5LQ99459 802 aaKnown RBP14.24□□□□□ -0.13
SKA3-203ENST00000400018 CHMLP26374 656 aa14.24□□□□□ -0.13
SKA3-203ENST00000400018 GPSM2P81274 684 aa14.24□□□□□ -0.13
SKA3-203ENST00000400018 A0A0D9SFI3 127 aa14.23□□□□□ -0.13
SKA3-203ENST00000400018 CDC45O75419 566 aa14.23□□□□□ -0.13
SKA3-203ENST00000400018 SPRYD3Q8NCJ5 442 aa14.23□□□□□ -0.13
SKA3-203ENST00000400018 COL24A1Q17RW2 1714 aa14.23□□□□□ -0.13
SKA3-203ENST00000400018 GLRX3O76003 335 aaKnown RBP14.23□□□□□ -0.13
SKA3-203ENST00000400018 KCNJ4P48050 445 aa14.22□□□□□ -0.13
SKA3-203ENST00000400018 ZNF589Q86UQ0 364 aaPredicted RBP14.22□□□□□ -0.13
SKA3-203ENST00000400018 C2CD5Q86YS7 1000 aa14.22□□□□□ -0.13
SKA3-203ENST00000400018 BSDC1Q9NW68 430 aaPredicted RBP14.22□□□□□ -0.13
SKA3-203ENST00000400018 SRGNP10124 158 aa14.22□□□□□ -0.13
SKA3-203ENST00000400018 CHAF1AQ13111 956 aaPredicted RBP14.22□□□□□ -0.13
SKA3-203ENST00000400018 NMIQ13287 307 aaPredicted RBP14.22□□□□□ -0.13
SKA3-203ENST00000400018 RASGRF1Q13972 1273 aa14.22□□□□□ -0.13
SKA3-203ENST00000400018 ANO2Q9NQ90 1003 aa14.22□□□□□ -0.13
SKA3-203ENST00000400018 CACNA1SQ13698 1873 aa14.22□□□□□ -0.13
SKA3-203ENST00000400018 ANKRD31Q8N7Z5 1873 aa14.22□□□□□ -0.13
SKA3-203ENST00000400018 FGFR2P21802 821 aa14.21□□□□□ -0.13
SKA3-203ENST00000400018 GRAPQ13588 217 aa14.21□□□□□ -0.13
SKA3-203ENST00000400018 PUM3Q15397 648 aaKnown RBP14.21□□□□□ -0.13
SKA3-203ENST00000400018 GRAPLQ8TC17 118 aaPredicted RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms