RNA–Protein interactions for RNA: ENST00000399976.6

USP16-204, Transcript of ubiquitin specific peptidase 16, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene USP16, Length 2,963 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP16-204ENST00000399976 EYA3Q99504 573 aa9.4□□□□□ -0.9
USP16-204ENST00000399976 MEIS3Q99687 375 aa9.4□□□□□ -0.9
USP16-204ENST00000399976 GREM2Q9H772 168 aa9.4□□□□□ -0.9
USP16-204ENST00000399976 YBX3P16989 372 aaKnown RBP eCLIP9.39□□□□□ -0.912e-6■□□□□ 10.3
USP16-204ENST00000399976 UBE4AQ14139 1066 aa9.39□□□□□ -0.91
USP16-204ENST00000399976 LMBR1LQ6UX01 489 aa9.39□□□□□ -0.91
USP16-204ENST00000399976 VGLL2Q8N8G2 317 aa9.39□□□□□ -0.91
USP16-204ENST00000399976 RIPOR2Q9Y4F9 1068 aa9.39□□□□□ -0.91
USP16-204ENST00000399976 HMMRO75330 724 aa9.39□□□□□ -0.91
USP16-204ENST00000399976 LMNB1P20700 586 aa9.39□□□□□ -0.91
USP16-204ENST00000399976 IL15P40933 162 aaPredicted RBP9.39□□□□□ -0.91
USP16-204ENST00000399976 EPHA10Q5JZY3 1008 aa9.39□□□□□ -0.91
USP16-204ENST00000399976 ERC1Q8IUD2 1116 aa9.39□□□□□ -0.91
USP16-204ENST00000399976 PTPN12Q05209 780 aaKnown RBP9.38□□□□□ -0.91
USP16-204ENST00000399976 ITPRIPQ8IWB1 547 aa9.38□□□□□ -0.91
USP16-204ENST00000399976 SYNE4Q8N205 404 aa9.38□□□□□ -0.91
USP16-204ENST00000399976 TAOK3Q9H2K8 898 aa9.38□□□□□ -0.91
USP16-204ENST00000399976 NFKBIEO00221 500 aa9.38□□□□□ -0.91
USP16-204ENST00000399976 KIAA2012Q0VF49 1180 aa9.38□□□□□ -0.91
USP16-204ENST00000399976 FAM161AQ3B820 660 aa9.38□□□□□ -0.91
USP16-204ENST00000399976 CEP85Q6P2H3 762 aa9.38□□□□□ -0.91
USP16-204ENST00000399976 TICAM2Q86XR7 235 aa9.38□□□□□ -0.91
USP16-204ENST00000399976 CELF1Q92879 486 aaKnown RBP9.38□□□□□ -0.91
USP16-204ENST00000399976 ZNF622Q969S3 477 aaKnown RBP eCLIP9.38□□□□□ -0.912e-6■□□□□ 10.9
USP16-204ENST00000399976 LRRFIP2Q9Y608 721 aaKnown RBP9.38□□□□□ -0.91
USP16-204ENST00000399976 LAMB1P07942 1786 aa9.38□□□□□ -0.91
USP16-204ENST00000399976 MYH7P12883 1935 aa9.37□□□□□ -0.91
USP16-204ENST00000399976 AKAP11Q9UKA4 1901 aa9.37□□□□□ -0.91
USP16-204ENST00000399976 EYA2O00167 538 aa9.37□□□□□ -0.91
USP16-204ENST00000399976 RAB11FIP3O75154 756 aa9.37□□□□□ -0.91
USP16-204ENST00000399976 MINPP1Q9UNW1 487 aa9.37□□□□□ -0.91
USP16-204ENST00000399976 HDAC1Q13547 482 aaPredicted RBP9.37□□□□□ -0.91
USP16-204ENST00000399976 MPNDQ8N594 471 aa9.37□□□□□ -0.91
USP16-204ENST00000399976 ZNF512BQ96KM6 892 aaPredicted RBP9.37□□□□□ -0.91
USP16-204ENST00000399976 FGFR2P21802 821 aa9.36□□□□□ -0.91
USP16-204ENST00000399976 MPHOSPH8Q99549 860 aa9.36□□□□□ -0.91
USP16-204ENST00000399976 COL4A5P29400 1685 aa9.36□□□□□ -0.91
USP16-204ENST00000399976 FOCADQ5VW36 1801 aa9.36□□□□□ -0.91
USP16-204ENST00000399976 SCN9AQ15858 1988 aa9.36□□□□□ -0.91
USP16-204ENST00000399976 SEMA3EO15041 775 aa9.36□□□□□ -0.91
USP16-204ENST00000399976 CENPBP07199 599 aaPredicted RBP9.36□□□□□ -0.91
USP16-204ENST00000399976 IARSP41252 1262 aaKnown RBP9.36□□□□□ -0.91
USP16-204ENST00000399976 FZD9O00144 591 aa9.36□□□□□ -0.91
USP16-204ENST00000399976 PANK1Q8TE04 598 aa9.36□□□□□ -0.91
USP16-204ENST00000399976 GGA1Q9UJY5 639 aa9.36□□□□□ -0.91
USP16-204ENST00000399976 BCS1LQ9Y276 419 aa9.36□□□□□ -0.91
USP16-204ENST00000399976 AKAP2Q9Y2D5 859 aa9.36□□□□□ -0.91
USP16-204ENST00000399976 ZNF804BA4D1E1 1349 aa9.35□□□□□ -0.91
USP16-204ENST00000399976 FAM177BA6PVY3 158 aa9.35□□□□□ -0.91
USP16-204ENST00000399976 GPR162Q16538 588 aa9.35□□□□□ -0.91
USP16-204ENST00000399976 DPP8Q6V1X1 898 aaPredicted RBP9.35□□□□□ -0.91
USP16-204ENST00000399976 ATG9AQ7Z3C6 839 aa9.35□□□□□ -0.91
USP16-204ENST00000399976 CLUAP1Q96AJ1 413 aa9.35□□□□□ -0.91
USP16-204ENST00000399976 SEC31BQ9NQW1 1179 aa9.35□□□□□ -0.91
USP16-204ENST00000399976 TNNQ9UQP3 1299 aa9.35□□□□□ -0.91
USP16-204ENST00000399976 MYO3BQ8WXR4 1341 aa9.35□□□□□ -0.91
USP16-204ENST00000399976 TBC1D16Q8TBP0 767 aa9.35□□□□□ -0.91
USP16-204ENST00000399976 L3MBTL3Q96JM7 780 aaPredicted RBP9.35□□□□□ -0.91
USP16-204ENST00000399976 COA1Q9GZY4 146 aa9.35□□□□□ -0.91
USP16-204ENST00000399976 PDE8BO95263 885 aa9.34□□□□□ -0.91
USP16-204ENST00000399976 IL1R1P14778 569 aa9.34□□□□□ -0.91
USP16-204ENST00000399976 GPSM2P81274 684 aa9.34□□□□□ -0.91
USP16-204ENST00000399976 CHRNDQ07001 517 aa9.34□□□□□ -0.91
USP16-204ENST00000399976 PUM3Q15397 648 aaKnown RBP9.34□□□□□ -0.91
USP16-204ENST00000399976 PODNQ7Z5L7 613 aa9.34□□□□□ -0.91
USP16-204ENST00000399976 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.34□□□□□ -0.91
USP16-204ENST00000399976 SUGT1Q9Y2Z0 365 aa9.34□□□□□ -0.91
USP16-204ENST00000399976 C21orf2O43822 256 aa9.34□□□□□ -0.91
USP16-204ENST00000399976 RPS12P25398 132 aaKnown RBP9.34□□□□□ -0.91
USP16-204ENST00000399976 LDHAL6AQ6ZMR3 332 aa9.34□□□□□ -0.91
USP16-204ENST00000399976 LPIN2Q92539 896 aa9.34□□□□□ -0.91
USP16-204ENST00000399976 YTHDC1Q96MU7 727 aaKnown RBP9.34□□□□□ -0.91
USP16-204ENST00000399976 FAM205AQ6ZU69 1335 aa9.34□□□□□ -0.91
USP16-204ENST00000399976 SALL1Q9NSC2 1324 aa9.34□□□□□ -0.91
USP16-204ENST00000399976 COL1A1P02452 1464 aaPredicted RBP9.34□□□□□ -0.91
USP16-204ENST00000399976 SRGAP3O43295 1099 aa9.33□□□□□ -0.92
USP16-204ENST00000399976 GCC1Q96CN9 775 aa9.33□□□□□ -0.92
USP16-204ENST00000399976 COG6Q9Y2V7 657 aa9.33□□□□□ -0.92
USP16-204ENST00000399976 TAF7LQ5H9L4 462 aa9.33□□□□□ -0.92
USP16-204ENST00000399976 MRIQ9BWK5 157 aa9.33□□□□□ -0.92
USP16-204ENST00000399976 DCTPP1Q9H773 170 aa9.33□□□□□ -0.92
USP16-204ENST00000399976 FBXO33Q7Z6M2 555 aa9.32□□□□□ -0.92
USP16-204ENST00000399976 ZNRF3Q9ULT6 936 aa9.32□□□□□ -0.92
USP16-204ENST00000399976 C20orf194Q5TEA3 1177 aa9.32□□□□□ -0.92
USP16-204ENST00000399976 ZNF804AQ7Z570 1209 aa9.32□□□□□ -0.92
USP16-204ENST00000399976 CCDC24Q8N4L8 307 aa9.32□□□□□ -0.92
USP16-204ENST00000399976 CNNM1Q9NRU3 951 aa9.32□□□□□ -0.92
USP16-204ENST00000399976 POLLQ9UGP5 575 aa9.32□□□□□ -0.92
USP16-204ENST00000399976 PNMA6EA0A0J9YXQ4 647 aa9.31□□□□□ -0.92
USP16-204ENST00000399976 SLC5A1P13866 664 aa9.31□□□□□ -0.92
USP16-204ENST00000399976 GPC2Q8N158 579 aa9.31□□□□□ -0.92
USP16-204ENST00000399976 KIF1BPQ96EK5 621 aa9.31□□□□□ -0.92
USP16-204ENST00000399976 IFIT1P09914 478 aaKnown RBP9.31□□□□□ -0.92
USP16-204ENST00000399976 G3BP1Q13283 466 aaKnown RBP eCLIP9.31□□□□□ -0.92
USP16-204ENST00000399976 TNIP1Q15025 636 aa9.31□□□□□ -0.92
USP16-204ENST00000399976 WASHC4Q2M389 1173 aa9.31□□□□□ -0.92
USP16-204ENST00000399976 ARHGAP27Q6ZUM4 889 aa9.31□□□□□ -0.92
USP16-204ENST00000399976 SIRT2Q8IXJ6 389 aa9.31□□□□□ -0.92
USP16-204ENST00000399976 KLHL34Q8N239 644 aa9.31□□□□□ -0.92
USP16-204ENST00000399976 AGBL3Q8NEM8 1001 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms