RNA–Protein interactions for RNA: ENST00000399022.8

RPRD1A-202, Transcript of regulation of nuclear pre-mRNA domain containing 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPRD1A, Length 4,438 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1A-202ENST00000399022 TDO2P48775 406 aa16.88■□□□□ 0.29
RPRD1A-202ENST00000399022 SMARCC1Q92922 1105 aaPredicted RBP16.88■□□□□ 0.29
RPRD1A-202ENST00000399022 CBX8Q9HC52 389 aa16.88■□□□□ 0.29
RPRD1A-202ENST00000399022 USP16Q9Y5T5 823 aa16.88■□□□□ 0.29
RPRD1A-202ENST00000399022 VPS53Q5VIR6 699 aa16.87■□□□□ 0.29
RPRD1A-202ENST00000399022 CPLX3Q8WVH0 158 aa16.87■□□□□ 0.29
RPRD1A-202ENST00000399022 PDLIM2Q96JY6 352 aa16.87■□□□□ 0.29
RPRD1A-202ENST00000399022 TRMT112Q9UI30 125 aaKnown RBP16.87■□□□□ 0.29
RPRD1A-202ENST00000399022 ZNF75DP51815 510 aa16.87■□□□□ 0.29
RPRD1A-202ENST00000399022 AIDAQ96BJ3 306 aa16.87■□□□□ 0.29
RPRD1A-202ENST00000399022 HECW2Q9P2P5 1572 aa16.87■□□□□ 0.29
RPRD1A-202ENST00000399022 ZNF853P0CG23 659 aa16.86■□□□□ 0.29
RPRD1A-202ENST00000399022 AMOTL1Q8IY63 956 aa16.86■□□□□ 0.29
RPRD1A-202ENST00000399022 KIAA0232Q92628 1395 aa16.86■□□□□ 0.29
RPRD1A-202ENST00000399022 PHACTR2O75167 634 aa16.86■□□□□ 0.29
RPRD1A-202ENST00000399022 LDHAL6AQ6ZMR3 332 aa16.86■□□□□ 0.29
RPRD1A-202ENST00000399022 LRP2BPQ9P2M1 347 aa16.86■□□□□ 0.29
RPRD1A-202ENST00000399022 AKAP2Q9Y2D5 859 aa16.86■□□□□ 0.29
RPRD1A-202ENST00000399022 SHTN1A0MZ66 631 aa16.86■□□□□ 0.29
RPRD1A-202ENST00000399022 IVLP07476 585 aa16.86■□□□□ 0.29
RPRD1A-202ENST00000399022 DDX17Q92841 729 aaKnown RBP16.86■□□□□ 0.29
RPRD1A-202ENST00000399022 DDX21Q9NR30 783 aaKnown RBP eCLIP16.86■□□□□ 0.29
RPRD1A-202ENST00000399022 ZSCAN25Q6NSZ9 544 aa16.85■□□□□ 0.29
RPRD1A-202ENST00000399022 CADPS2Q86UW7 1296 aa16.85■□□□□ 0.29
RPRD1A-202ENST00000399022 NACAP1Q9BZK3 213 aa16.85■□□□□ 0.29
RPRD1A-202ENST00000399022 FAM135BQ49AJ0 1406 aa16.85■□□□□ 0.29
RPRD1A-202ENST00000399022 LMOD1P29536 600 aaPredicted RBP16.85■□□□□ 0.29
RPRD1A-202ENST00000399022 EIF4A1P60842 406 aaKnown RBP16.85■□□□□ 0.29
RPRD1A-202ENST00000399022 KIAA1524Q8TCG1 905 aa16.85■□□□□ 0.29
RPRD1A-202ENST00000399022 RNF216Q9NWF9 866 aaPredicted RBP16.85■□□□□ 0.29
RPRD1A-202ENST00000399022 VPS18Q9P253 973 aa16.85■□□□□ 0.29
RPRD1A-202ENST00000399022 DACH1Q9UI36 760 aa16.85■□□□□ 0.29
RPRD1A-202ENST00000399022 NDUFB9Q9Y6M9 179 aa16.85■□□□□ 0.29
RPRD1A-202ENST00000399022 LIG1P18858 919 aa16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 HSP90AA4PQ58FG1 418 aa16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 PALD1Q9ULE6 856 aa16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 CLSTN1O94985 981 aa16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 TTC31Q49AM3 519 aaPredicted RBP16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 TRIM22Q8IYM9 498 aa16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 TTC41PQ6P2S7 1318 aa16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 XBP1P17861 261 aa16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 CREB3L3Q68CJ9 461 aa16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 RAI14Q9P0K7 980 aa16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 ABCA6Q8N139 1617 aa16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 TFCP2Q12800 502 aa16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 CHST3Q7LGC8 479 aa16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 SIRT1Q96EB6 747 aa16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 C8orf76Q96K31 380 aa16.84■□□□□ 0.29
RPRD1A-202ENST00000399022 UBASH3AP57075 661 aa16.83■□□□□ 0.29
RPRD1A-202ENST00000399022 CERS3Q8IU89 383 aa16.83■□□□□ 0.29
RPRD1A-202ENST00000399022 SRRTQ9BXP5 876 aaKnown RBP16.83■□□□□ 0.29
RPRD1A-202ENST00000399022 AATKQ6ZMQ8 1374 aa16.83■□□□□ 0.29
RPRD1A-202ENST00000399022 ZNF213O14771 459 aa16.83■□□□□ 0.28
RPRD1A-202ENST00000399022 ADAMTS2O95450 1211 aa16.83■□□□□ 0.28
RPRD1A-202ENST00000399022 EVCP57679 992 aa16.83■□□□□ 0.28
RPRD1A-202ENST00000399022 ERCC6LQ2NKX8 1250 aa16.83■□□□□ 0.28
RPRD1A-202ENST00000399022 CTR9Q6PD62 1173 aa16.83■□□□□ 0.28
RPRD1A-202ENST00000399022 ZNF790Q6PG37 636 aa16.83■□□□□ 0.28
RPRD1A-202ENST00000399022 PAXIP1Q6ZW49 1069 aaPredicted RBP16.83■□□□□ 0.28
RPRD1A-202ENST00000399022 ZCRB1Q8TBF4 217 aaKnown RBP16.83■□□□□ 0.28
RPRD1A-202ENST00000399022 FAM227BQ96M60 508 aa16.83■□□□□ 0.28
RPRD1A-202ENST00000399022 GOLGA8BA8MQT2 603 aa16.83■□□□□ 0.28
RPRD1A-202ENST00000399022 KLHL10Q6JEL2 608 aa16.83■□□□□ 0.28
RPRD1A-202ENST00000399022 CCDC144CPQ8IYA2 1237 aa16.83■□□□□ 0.28
RPRD1A-202ENST00000399022 IFNKQ9P0W0 207 aa16.83■□□□□ 0.28
RPRD1A-202ENST00000399022 POLR3DP05423 398 aaPredicted RBP16.82■□□□□ 0.28
RPRD1A-202ENST00000399022 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.82■□□□□ 0.28
RPRD1A-202ENST00000399022 MICALL1Q8N3F8 863 aa16.82■□□□□ 0.28
RPRD1A-202ENST00000399022 NEK11Q8NG66 645 aa16.82■□□□□ 0.28
RPRD1A-202ENST00000399022 C19orf44Q9H6X5 657 aa16.82■□□□□ 0.28
RPRD1A-202ENST00000399022 ARHGEF10O15013 1369 aa16.82■□□□□ 0.28
RPRD1A-202ENST00000399022 MINDY4BA8MYZ0 360 aa16.82■□□□□ 0.28
RPRD1A-202ENST00000399022 SGSM2O43147 1006 aa16.82■□□□□ 0.28
RPRD1A-202ENST00000399022 SUCLG2Q96I99 432 aa16.82■□□□□ 0.28
RPRD1A-202ENST00000399022 FAM107BQ9H098 131 aa16.82■□□□□ 0.28
RPRD1A-202ENST00000399022 SNX14Q9Y5W7 946 aa16.82■□□□□ 0.28
RPRD1A-202ENST00000399022 GOLGA6L9A6NEM1 432 aa16.81■□□□□ 0.28
RPRD1A-202ENST00000399022 HMGB1P09429 215 aaKnown RBP16.81■□□□□ 0.28
RPRD1A-202ENST00000399022 HSPA2P54652 639 aa16.81■□□□□ 0.28
RPRD1A-202ENST00000399022 Q6ZUG5 572 aa16.81■□□□□ 0.28
RPRD1A-202ENST00000399022 ZSCAN16Q9H4T2 348 aaPredicted RBP16.81■□□□□ 0.28
RPRD1A-202ENST00000399022 BRMS1Q9HCU9 246 aa16.81■□□□□ 0.28
RPRD1A-202ENST00000399022 HMG20BQ9P0W2 317 aa16.81■□□□□ 0.28
RPRD1A-202ENST00000399022 ATP7BP35670 1465 aa16.81■□□□□ 0.28
RPRD1A-202ENST00000399022 TIMM10P62072 90 aa16.81■□□□□ 0.28
RPRD1A-202ENST00000399022 MAP9Q49MG5 647 aa16.81■□□□□ 0.28
RPRD1A-202ENST00000399022 UNC5CLQ8IV45 518 aa16.81■□□□□ 0.28
RPRD1A-202ENST00000399022 UBAC1Q9BSL1 405 aa16.81■□□□□ 0.28
RPRD1A-202ENST00000399022 CCDC47Q96A33 483 aaKnown RBP16.8■□□□□ 0.28
RPRD1A-202ENST00000399022 CARD6Q9BX69 1037 aa16.8■□□□□ 0.28
RPRD1A-202ENST00000399022 NAPBQ9H115 298 aa16.8■□□□□ 0.28
RPRD1A-202ENST00000399022 GNL3LQ9NVN8 582 aaKnown RBP16.8■□□□□ 0.28
RPRD1A-202ENST00000399022 ARAP3Q8WWN8 1544 aa16.8■□□□□ 0.28
RPRD1A-202ENST00000399022 CCDC181Q5TID7 509 aa16.8■□□□□ 0.28
RPRD1A-202ENST00000399022 CCDC129Q6ZRS4 1044 aa16.8■□□□□ 0.28
RPRD1A-202ENST00000399022 CCDC148Q8NFR7 591 aa16.8■□□□□ 0.28
RPRD1A-202ENST00000399022 EDC3Q96F86 508 aaKnown RBP16.8■□□□□ 0.28
RPRD1A-202ENST00000399022 ZNHIT6Q9NWK9 470 aaKnown RBP16.8■□□□□ 0.28
RPRD1A-202ENST00000399022 CFAP74Q9C0B2 1584 aa16.8■□□□□ 0.28
RPRD1A-202ENST00000399022 NRBP1Q9UHY1 535 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms