RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 DBNDD2Q9BQY9 259 aa9.79□□□□□ -0.84
PTPRD-204ENST00000397606 SKOR2Q2VWA4 1001 aaPredicted RBP9.78□□□□□ -0.84
PTPRD-204ENST00000397606 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.78□□□□□ -0.84
PTPRD-204ENST00000397606 RNF113AO15541 343 aaKnown RBP9.78□□□□□ -0.84
PTPRD-204ENST00000397606 HLA-DOAP06340 250 aa9.78□□□□□ -0.84
PTPRD-204ENST00000397606 PLCG2P16885 1265 aa9.78□□□□□ -0.84
PTPRD-204ENST00000397606 COPRSQ9NQ92 184 aa9.78□□□□□ -0.84
PTPRD-204ENST00000397606 CEMIPQ8WUJ3 1361 aa9.78□□□□□ -0.84
PTPRD-204ENST00000397606 RIMBP2O15034 1052 aa9.78□□□□□ -0.84
PTPRD-204ENST00000397606 NRDCO43847 1150 aa9.78□□□□□ -0.84
PTPRD-204ENST00000397606 SERPINB2P05120 415 aa9.78□□□□□ -0.84
PTPRD-204ENST00000397606 PDIA4P13667 645 aaKnown RBP9.78□□□□□ -0.84
PTPRD-204ENST00000397606 STK3Q13188 491 aa9.78□□□□□ -0.84
PTPRD-204ENST00000397606 ESYT1Q9BSJ8 1104 aa9.78□□□□□ -0.84
PTPRD-204ENST00000397606 NARFQ9UHQ1 456 aa9.78□□□□□ -0.84
PTPRD-204ENST00000397606 TCEAL9Q9UHQ7 104 aa9.78□□□□□ -0.84
PTPRD-204ENST00000397606 LDHBP07195 334 aaKnown RBP9.78□□□□□ -0.84
PTPRD-204ENST00000397606 GNAT2P19087 354 aa9.78□□□□□ -0.84
PTPRD-204ENST00000397606 PDE4BQ07343 736 aa9.78□□□□□ -0.84
PTPRD-204ENST00000397606 UPF3BQ9BZI7 483 aaKnown RBP9.78□□□□□ -0.84
PTPRD-204ENST00000397606 FOSBP53539 338 aa9.77□□□□□ -0.84
PTPRD-204ENST00000397606 DDX49Q9Y6V7 483 aaKnown RBP9.77□□□□□ -0.84
PTPRD-204ENST00000397606 RANBP6O60518 1105 aaKnown RBP9.77□□□□□ -0.85
PTPRD-204ENST00000397606 TXNRD1Q16881 649 aa9.77□□□□□ -0.85
PTPRD-204ENST00000397606 CNKSR1Q969H4 720 aa9.77□□□□□ -0.85
PTPRD-204ENST00000397606 RAD50Q92878 1312 aa9.77□□□□□ -0.85
PTPRD-204ENST00000397606 MPHOSPH10O00566 681 aaKnown RBP9.77□□□□□ -0.85
PTPRD-204ENST00000397606 CCDC196A0A1B0GTZ2 297 aa9.77□□□□□ -0.85
PTPRD-204ENST00000397606 TAF5LO75529 589 aa9.77□□□□□ -0.85
PTPRD-204ENST00000397606 GZF1Q9H116 711 aaPredicted RBP9.77□□□□□ -0.85
PTPRD-204ENST00000397606 COL5A2P05997 1499 aaPredicted RBP9.76□□□□□ -0.85
PTPRD-204ENST00000397606 COL15A1P39059 1388 aa9.76□□□□□ -0.85
PTPRD-204ENST00000397606 KDM2BQ8NHM5 1336 aa9.76□□□□□ -0.85
PTPRD-204ENST00000397606 WDR66Q8TBY9 1149 aa9.76□□□□□ -0.85
PTPRD-204ENST00000397606 L1TD1Q5T7N2 865 aaKnown RBP9.76□□□□□ -0.85
PTPRD-204ENST00000397606 MFSD6Q6ZSS7 791 aa9.76□□□□□ -0.85
PTPRD-204ENST00000397606 TMC4Q7Z404 712 aa9.76□□□□□ -0.85
PTPRD-204ENST00000397606 MPNDQ8N594 471 aa9.76□□□□□ -0.85
PTPRD-204ENST00000397606 SLC4A4Q9Y6R1 1079 aa9.76□□□□□ -0.85
PTPRD-204ENST00000397606 MAGEB6P1A0A0J9YX57 407 aa9.76□□□□□ -0.85
PTPRD-204ENST00000397606 TPM4P67936 248 aa9.76□□□□□ -0.85
PTPRD-204ENST00000397606 C2CD5Q86YS7 1000 aa9.76□□□□□ -0.85
PTPRD-204ENST00000397606 GREM2Q9H772 168 aa9.76□□□□□ -0.85
PTPRD-204ENST00000397606 SH2B1Q9NRF2 756 aaPredicted RBP9.76□□□□□ -0.85
PTPRD-204ENST00000397606 SRP68Q9UHB9 627 aaKnown RBP9.76□□□□□ -0.85
PTPRD-204ENST00000397606 F8W031 263 aaPredicted RBP9.76□□□□□ -0.85
PTPRD-204ENST00000397606 CIAO1O76071 339 aa9.76□□□□□ -0.85
PTPRD-204ENST00000397606 NMIQ13287 307 aaPredicted RBP9.76□□□□□ -0.85
PTPRD-204ENST00000397606 WASF1Q92558 559 aa9.76□□□□□ -0.85
PTPRD-204ENST00000397606 WWC3Q9ULE0 1092 aa9.76□□□□□ -0.85
PTPRD-204ENST00000397606 RC3H1Q5TC82 1133 aaKnown RBP9.75□□□□□ -0.85
PTPRD-204ENST00000397606 NCOA7Q8NI08 942 aa9.75□□□□□ -0.85
PTPRD-204ENST00000397606 H7C1W4 665 aa9.75□□□□□ -0.85
PTPRD-204ENST00000397606 MAGEB6Q8N7X4 407 aa9.75□□□□□ -0.85
PTPRD-204ENST00000397606 COL3A1P02461 1466 aaPredicted RBP9.75□□□□□ -0.85
PTPRD-204ENST00000397606 NRXN3Q9Y4C0 1643 aa9.75□□□□□ -0.85
PTPRD-204ENST00000397606 IFIT3O14879 490 aaKnown RBP9.75□□□□□ -0.85
PTPRD-204ENST00000397606 SOGA3Q5TF21 947 aa9.75□□□□□ -0.85
PTPRD-204ENST00000397606 BICD2Q8TD16 824 aa9.75□□□□□ -0.85
PTPRD-204ENST00000397606 NEK1Q96PY6 1258 aa9.75□□□□□ -0.85
PTPRD-204ENST00000397606 MAP2P11137 1827 aaKnown RBP9.75□□□□□ -0.85
PTPRD-204ENST00000397606 MEGF6O75095 1541 aa9.75□□□□□ -0.85
PTPRD-204ENST00000397606 ATP2B4P23634 1241 aa9.75□□□□□ -0.85
PTPRD-204ENST00000397606 ANAPC15P60006 121 aa9.75□□□□□ -0.85
PTPRD-204ENST00000397606 CTCFLQ8NI51 663 aaPredicted RBP9.75□□□□□ -0.85
PTPRD-204ENST00000397606 IBTKQ9P2D0 1353 aaPredicted RBP9.75□□□□□ -0.85
PTPRD-204ENST00000397606 ATP5JP18859 108 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 CHMLP26374 656 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 SSFA2P28290 1259 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 HLFQ16534 295 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 ERFEQ4G0M1 354 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 FNBP4Q8N3X1 1017 aaPredicted RBP9.74□□□□□ -0.85
PTPRD-204ENST00000397606 CNNM2Q9H8M5 875 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 HELLSQ9NRZ9 838 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 FMN2Q9NZ56 1722 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 IQSEC2Q5JU85 1478 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 ZNF142P52746 1687 aaPredicted RBP9.74□□□□□ -0.85
PTPRD-204ENST00000397606 MAST3O60307 1309 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 WDR33Q9C0J8 1336 aaKnown RBP9.74□□□□□ -0.85
PTPRD-204ENST00000397606 HAND2P61296 217 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 SUSD4Q5VX71 490 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 LARP1BQ659C4 914 aaKnown RBP9.74□□□□□ -0.85
PTPRD-204ENST00000397606 CERS3Q8IU89 383 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 CCAR1Q8IX12 1150 aaKnown RBP9.74□□□□□ -0.85
PTPRD-204ENST00000397606 OTUD7AQ8TE49 926 aaPredicted RBP9.74□□□□□ -0.85
PTPRD-204ENST00000397606 RBM8AQ9Y5S9 174 aaKnown RBP9.74□□□□□ -0.85
PTPRD-204ENST00000397606 PLEKHG2Q9H7P9 1386 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 TSPY2A6NKD2 308 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 NBPF26B4DH59 902 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 BBOX1O75936 387 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 NBPF10Q6P3W6 841 aaKnown RBP9.74□□□□□ -0.85
PTPRD-204ENST00000397606 LARGE2Q8N3Y3 721 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 NBPF15Q8N660 670 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 TBC1D22AQ8WUA7 517 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 KRT23Q9C075 422 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 CABP5Q9NP86 173 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 GPR108Q9NPR9 543 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 LIMCH1Q9UPQ0 1083 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 SLC12A7Q9Y666 1083 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 PDE8BO95263 885 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms