RNA–Protein interactions for RNA: ENST00000396352.8

HOXA3-202, Transcript of homeobox A3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA3, Length 3,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3-202ENST00000396352 PLA2G4DQ86XP0 818 aa18.55■□□□□ 0.56
HOXA3-202ENST00000396352 TDRD7Q8NHU6 1098 aaKnown RBP18.55■□□□□ 0.56
HOXA3-202ENST00000396352 DDX11Q96FC9 970 aa18.55■□□□□ 0.56
HOXA3-202ENST00000396352 ZC3H6P61129 1189 aaKnown RBP18.55■□□□□ 0.56
HOXA3-202ENST00000396352 SMARCC2Q8TAQ2 1214 aa18.55■□□□□ 0.56
HOXA3-202ENST00000396352 DDX46Q7L014 1031 aaKnown RBP18.55■□□□□ 0.56
HOXA3-202ENST00000396352 SNRPA1P09661 255 aaKnown RBP18.54■□□□□ 0.56
HOXA3-202ENST00000396352 KIF3AQ9Y496 699 aa18.54■□□□□ 0.56
HOXA3-202ENST00000396352 PKD1L3Q7Z443 1732 aa18.54■□□□□ 0.56
HOXA3-202ENST00000396352 SH3TC1Q8TE82 1336 aa18.54■□□□□ 0.56
HOXA3-202ENST00000396352 BICD2Q8TD16 824 aa18.54■□□□□ 0.56
HOXA3-202ENST00000396352 HSP90B1P14625 803 aaKnown RBP18.54■□□□□ 0.56
HOXA3-202ENST00000396352 ARID3AQ99856 593 aa18.54■□□□□ 0.56
HOXA3-202ENST00000396352 LRRC2Q9BYS8 371 aa18.54■□□□□ 0.56
HOXA3-202ENST00000396352 ZSCAN16Q9H4T2 348 aaPredicted RBP18.54■□□□□ 0.56
HOXA3-202ENST00000396352 ADD1P35611 737 aaKnown RBP18.53■□□□□ 0.56
HOXA3-202ENST00000396352 ZNF75DP51815 510 aa18.53■□□□□ 0.56
HOXA3-202ENST00000396352 NLRP2Q9NX02 1062 aa18.53■□□□□ 0.56
HOXA3-202ENST00000396352 PALLDQ8WX93 1383 aa18.53■□□□□ 0.56
HOXA3-202ENST00000396352 C1orf167Q5SNV9 1468 aa18.53■□□□□ 0.56
HOXA3-202ENST00000396352 FAM177BA6PVY3 158 aa18.53■□□□□ 0.56
HOXA3-202ENST00000396352 ATP5J2-PTCD1G3V325 749 aa18.53■□□□□ 0.56
HOXA3-202ENST00000396352 PTCD1O75127 700 aaKnown RBP18.53■□□□□ 0.56
HOXA3-202ENST00000396352 TATP17735 454 aaPredicted RBP18.53■□□□□ 0.56
HOXA3-202ENST00000396352 KBTBD3Q8NAB2 608 aa18.53■□□□□ 0.56
HOXA3-202ENST00000396352 A0A087WZG4 1122 aa18.52■□□□□ 0.56
HOXA3-202ENST00000396352 PFKFB2O60825 505 aa18.52■□□□□ 0.56
HOXA3-202ENST00000396352 CCDC94Q9BW85 323 aaPredicted RBP18.52■□□□□ 0.56
HOXA3-202ENST00000396352 DNAJC25Q9H1X3 360 aa18.52■□□□□ 0.56
HOXA3-202ENST00000396352 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.52■□□□□ 0.56
HOXA3-202ENST00000396352 TJP1Q07157 1748 aa18.52■□□□□ 0.56
HOXA3-202ENST00000396352 ADAMTSL3P82987 1691 aa18.52■□□□□ 0.56
HOXA3-202ENST00000396352 H3BQV1 296 aa18.52■□□□□ 0.56
HOXA3-202ENST00000396352 IFFO2Q5TF58 517 aa18.52■□□□□ 0.56
HOXA3-202ENST00000396352 CCDC186Q7Z3E2 898 aa18.52■□□□□ 0.56
HOXA3-202ENST00000396352 LLPHQ9BRT6 129 aaKnown RBP18.52■□□□□ 0.56
HOXA3-202ENST00000396352 NRBP1Q9UHY1 535 aa18.52■□□□□ 0.56
HOXA3-202ENST00000396352 CTDNEP1O95476 244 aa18.52■□□□□ 0.55
HOXA3-202ENST00000396352 ZNF165P49910 485 aa18.52■□□□□ 0.55
HOXA3-202ENST00000396352 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.52■□□□□ 0.55
HOXA3-202ENST00000396352 IFNL2Q8IZJ0 200 aa18.52■□□□□ 0.55
HOXA3-202ENST00000396352 NSUN7Q8NE18 718 aaKnown RBP18.52■□□□□ 0.55
HOXA3-202ENST00000396352 NUP188Q5SRE5 1749 aa18.51■□□□□ 0.55
HOXA3-202ENST00000396352 BCL2L12Q9HB09 334 aa18.51■□□□□ 0.55
HOXA3-202ENST00000396352 CFAP45Q9UL16 551 aa18.51■□□□□ 0.55
HOXA3-202ENST00000396352 RIOK3O14730 519 aaKnown RBP18.51■□□□□ 0.55
HOXA3-202ENST00000396352 LRMPQ12912 555 aa18.51■□□□□ 0.55
HOXA3-202ENST00000396352 TTC5Q8N0Z6 440 aa18.51■□□□□ 0.55
HOXA3-202ENST00000396352 SLFNL1Q499Z3 407 aa18.5■□□□□ 0.55
HOXA3-202ENST00000396352 CYP27B1O15528 508 aa18.5■□□□□ 0.55
HOXA3-202ENST00000396352 FMNL2Q96PY5 1086 aa18.5■□□□□ 0.55
HOXA3-202ENST00000396352 TRIM5Q9C035 493 aa18.5■□□□□ 0.55
HOXA3-202ENST00000396352 FOXO4P98177 505 aa18.5■□□□□ 0.55
HOXA3-202ENST00000396352 NAA16Q6N069 864 aaPredicted RBP18.5■□□□□ 0.55
HOXA3-202ENST00000396352 LMBR1LQ6UX01 489 aa18.5■□□□□ 0.55
HOXA3-202ENST00000396352 DHX32Q7L7V1 743 aaKnown RBP18.5■□□□□ 0.55
HOXA3-202ENST00000396352 DCAF5Q96JK2 942 aa18.5■□□□□ 0.55
HOXA3-202ENST00000396352 AGXT2Q9BYV1 514 aa18.5■□□□□ 0.55
HOXA3-202ENST00000396352 HMGB1P09429 215 aaKnown RBP18.49■□□□□ 0.55
HOXA3-202ENST00000396352 ZSCAN25Q6NSZ9 544 aa18.49■□□□□ 0.55
HOXA3-202ENST00000396352 ATG9AQ7Z3C6 839 aa18.49■□□□□ 0.55
HOXA3-202ENST00000396352 PLBD2Q8NHP8 589 aa18.49■□□□□ 0.55
HOXA3-202ENST00000396352 PKNOX2Q96KN3 472 aa18.49■□□□□ 0.55
HOXA3-202ENST00000396352 PARP4Q9UKK3 1724 aaKnown RBP18.49■□□□□ 0.55
HOXA3-202ENST00000396352 EXOSC10Q01780 885 aaKnown RBP18.49■□□□□ 0.55
HOXA3-202ENST00000396352 FTOQ9C0B1 505 aaKnown RBP eCLIP18.49■□□□□ 0.55
HOXA3-202ENST00000396352 SALL1Q9NSC2 1324 aa18.48■□□□□ 0.55
HOXA3-202ENST00000396352 APOBRQ0VD83 1088 aa18.48■□□□□ 0.55
HOXA3-202ENST00000396352 CHAF1AQ13111 956 aaPredicted RBP18.48■□□□□ 0.55
HOXA3-202ENST00000396352 IQCB1Q15051 598 aa18.48■□□□□ 0.55
HOXA3-202ENST00000396352 DSCC1Q9BVC3 393 aa18.48■□□□□ 0.55
HOXA3-202ENST00000396352 GOLPH3LQ9H4A5 285 aa18.48■□□□□ 0.55
HOXA3-202ENST00000396352 HELLSQ9NRZ9 838 aa18.48■□□□□ 0.55
HOXA3-202ENST00000396352 PAG1Q9NWQ8 432 aa18.48■□□□□ 0.55
HOXA3-202ENST00000396352 RCOR1Q9UKL0 485 aa18.48■□□□□ 0.55
HOXA3-202ENST00000396352 A0A0G2JLW4 131 aa18.48■□□□□ 0.55
HOXA3-202ENST00000396352 PTPDC1A2A3K4 754 aa18.48■□□□□ 0.55
HOXA3-202ENST00000396352 CAVIN2O95810 425 aa18.48■□□□□ 0.55
HOXA3-202ENST00000396352 CEBPZQ03701 1054 aaKnown RBP18.48■□□□□ 0.55
HOXA3-202ENST00000396352 CCDC9Q9Y3X0 531 aaKnown RBP18.48■□□□□ 0.55
HOXA3-202ENST00000396352 GOLIM4O00461 696 aa18.47■□□□□ 0.55
HOXA3-202ENST00000396352 CTIFO43310 598 aaKnown RBP18.47■□□□□ 0.55
HOXA3-202ENST00000396352 DRC7Q8IY82 874 aa18.47■□□□□ 0.55
HOXA3-202ENST00000396352 PLEKHG2Q9H7P9 1386 aa18.47■□□□□ 0.55
HOXA3-202ENST00000396352 CDC25BP30305 580 aa18.47■□□□□ 0.55
HOXA3-202ENST00000396352 C11orf57Q6ZUT1 292 aaPredicted RBP18.47■□□□□ 0.55
HOXA3-202ENST00000396352 SPEF2Q9C093 1822 aa18.47■□□□□ 0.55
HOXA3-202ENST00000396352 H7C1W4 665 aa18.47■□□□□ 0.55
HOXA3-202ENST00000396352 FGD1P98174 961 aa18.47■□□□□ 0.55
HOXA3-202ENST00000396352 SNW1Q13573 536 aaKnown RBP18.47■□□□□ 0.55
HOXA3-202ENST00000396352 CCDC144BQ3MJ40 725 aa18.47■□□□□ 0.55
HOXA3-202ENST00000396352 ZMYM1Q5SVZ6 1142 aa18.47■□□□□ 0.55
HOXA3-202ENST00000396352 CCDC144CPQ8IYA2 1237 aa18.47■□□□□ 0.55
HOXA3-202ENST00000396352 TMEM94Q12767 1356 aa18.46■□□□□ 0.55
HOXA3-202ENST00000396352 FOSBP53539 338 aa18.46■□□□□ 0.55
HOXA3-202ENST00000396352 CLIP2Q9UDT6 1046 aa18.46■□□□□ 0.55
HOXA3-202ENST00000396352 NWD2Q9ULI1 1742 aa18.45■□□□□ 0.54
HOXA3-202ENST00000396352 SARM1Q6SZW1 724 aa18.45■□□□□ 0.54
HOXA3-202ENST00000396352 ILDR1Q86SU0 546 aaPredicted RBP18.45■□□□□ 0.54
HOXA3-202ENST00000396352 CCAR1Q8IX12 1150 aaKnown RBP18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms