RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 ECHDC1Q9NTX5 307 aa16.75■□□□□ 0.27
VAPB-202ENST00000395802 EIF5BO60841 1220 aaKnown RBP16.75■□□□□ 0.27
VAPB-202ENST00000395802 GLRX3O76003 335 aaKnown RBP16.75■□□□□ 0.27
VAPB-202ENST00000395802 POLD1P28340 1107 aa16.75■□□□□ 0.27
VAPB-202ENST00000395802 HOXA10P31260 410 aaPredicted RBP16.75■□□□□ 0.27
VAPB-202ENST00000395802 SALL3Q9BXA9 1300 aa16.75■□□□□ 0.27
VAPB-202ENST00000395802 MTFR1LQ9H019 292 aa16.75■□□□□ 0.27
VAPB-202ENST00000395802 LRP5O75197 1615 aa16.74■□□□□ 0.27
VAPB-202ENST00000395802 BBOX1O75936 387 aa16.74■□□□□ 0.27
VAPB-202ENST00000395802 ALDH1B1P30837 517 aa16.74■□□□□ 0.27
VAPB-202ENST00000395802 PUM3Q15397 648 aaKnown RBP16.74■□□□□ 0.27
VAPB-202ENST00000395802 TTC22Q5TAA0 569 aa16.74■□□□□ 0.27
VAPB-202ENST00000395802 NEUROD6Q96NK8 337 aa16.74■□□□□ 0.27
VAPB-202ENST00000395802 CRAMP1Q96RY5 1269 aa16.74■□□□□ 0.27
VAPB-202ENST00000395802 ANKRD2Q9GZV1 360 aa16.74■□□□□ 0.27
VAPB-202ENST00000395802 NPR1P16066 1061 aa16.73■□□□□ 0.27
VAPB-202ENST00000395802 A0A1B0GUL7 405 aa16.73■□□□□ 0.27
VAPB-202ENST00000395802 OTUD7AQ8TE49 926 aaPredicted RBP16.73■□□□□ 0.27
VAPB-202ENST00000395802 CELF1Q92879 486 aaKnown RBP16.73■□□□□ 0.27
VAPB-202ENST00000395802 CCDC8Q9H0W5 538 aaPredicted RBP16.73■□□□□ 0.27
VAPB-202ENST00000395802 TMX4Q9H1E5 349 aaPredicted RBP16.73■□□□□ 0.27
VAPB-202ENST00000395802 ATP2B3Q16720 1220 aa16.72■□□□□ 0.27
VAPB-202ENST00000395802 C8orf34Q49A92 452 aa16.72■□□□□ 0.27
VAPB-202ENST00000395802 CCDC158Q5M9N0 1113 aa16.72■□□□□ 0.27
VAPB-202ENST00000395802 GORABQ5T7V8 394 aa16.72■□□□□ 0.27
VAPB-202ENST00000395802 LPIN2Q92539 896 aa16.72■□□□□ 0.27
VAPB-202ENST00000395802 MASTLQ96GX5 879 aa16.72■□□□□ 0.27
VAPB-202ENST00000395802 H0YIN7 160 aa16.71■□□□□ 0.27
VAPB-202ENST00000395802 IFIT1P09914 478 aaKnown RBP16.71■□□□□ 0.27
VAPB-202ENST00000395802 SRGNP10124 158 aa16.71■□□□□ 0.27
VAPB-202ENST00000395802 SLC5A1P13866 664 aa16.71■□□□□ 0.27
VAPB-202ENST00000395802 CHRNDQ07001 517 aa16.71■□□□□ 0.27
VAPB-202ENST00000395802 VGLL2Q8N8G2 317 aa16.71■□□□□ 0.27
VAPB-202ENST00000395802 TNRC6CQ9HCJ0 1690 aaKnown RBP16.71■□□□□ 0.27
VAPB-202ENST00000395802 ZNF609O15014 1411 aa16.71■□□□□ 0.27
VAPB-202ENST00000395802 R3HDM1Q15032 1099 aaKnown RBP16.7■□□□□ 0.26
VAPB-202ENST00000395802 CASC1Q6TDU7 716 aa16.7■□□□□ 0.26
VAPB-202ENST00000395802 DBNLQ9UJU6 430 aaKnown RBP16.7■□□□□ 0.26
VAPB-202ENST00000395802 MINPP1Q9UNW1 487 aa16.7■□□□□ 0.26
VAPB-202ENST00000395802 TIMM10P62072 90 aa16.7■□□□□ 0.26
VAPB-202ENST00000395802 PDGFDQ9GZP0 370 aaPredicted RBP16.7■□□□□ 0.26
VAPB-202ENST00000395802 CASZ1Q86V15 1759 aa16.69■□□□□ 0.26
VAPB-202ENST00000395802 UBE4AQ14139 1066 aa16.69■□□□□ 0.26
VAPB-202ENST00000395802 ATP5JP18859 108 aa16.68■□□□□ 0.26
VAPB-202ENST00000395802 KCNJ4P48050 445 aa16.68■□□□□ 0.26
VAPB-202ENST00000395802 STYK1Q6J9G0 422 aa16.68■□□□□ 0.26
VAPB-202ENST00000395802 CNTROBQ8N137 903 aa16.68■□□□□ 0.26
VAPB-202ENST00000395802 PI4K2BQ8TCG2 481 aa16.68■□□□□ 0.26
VAPB-202ENST00000395802 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.68■□□□□ 0.26
VAPB-202ENST00000395802 XAGE2Q96GT9 111 aa16.68■□□□□ 0.26
VAPB-202ENST00000395802 DBNDD2Q9BQY9 259 aa16.68■□□□□ 0.26
VAPB-202ENST00000395802 TRIM6-TRIM34B2RNG4 842 aa16.68■□□□□ 0.26
VAPB-202ENST00000395802 C2CD5Q86YS7 1000 aa16.68■□□□□ 0.26
VAPB-202ENST00000395802 CNKSR1Q969H4 720 aa16.68■□□□□ 0.26
VAPB-202ENST00000395802 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.68■□□□□ 0.26
VAPB-202ENST00000395802 ZBTB7AO95365 584 aa16.67■□□□□ 0.26
VAPB-202ENST00000395802 GSPT1P15170 499 aaKnown RBP16.67■□□□□ 0.26
VAPB-202ENST00000395802 FGFR2P21802 821 aa16.67■□□□□ 0.26
VAPB-202ENST00000395802 ANKIB1Q9P2G1 1089 aa16.67■□□□□ 0.26
VAPB-202ENST00000395802 TAF5LO75529 589 aa16.66■□□□□ 0.26
VAPB-202ENST00000395802 TTC39AQ5SRH9 613 aa16.66■□□□□ 0.26
VAPB-202ENST00000395802 TICAM2Q86XR7 235 aa16.66■□□□□ 0.26
VAPB-202ENST00000395802 EVI5LQ96CN4 794 aa16.66■□□□□ 0.26
VAPB-202ENST00000395802 ZNF512BQ96KM6 892 aaPredicted RBP16.66■□□□□ 0.26
VAPB-202ENST00000395802 TLR7Q9NYK1 1049 aaKnown RBP16.66■□□□□ 0.26
VAPB-202ENST00000395802 LEMD3Q9Y2U8 911 aa16.66■□□□□ 0.26
VAPB-202ENST00000395802 XDHP47989 1333 aa16.66■□□□□ 0.26
VAPB-202ENST00000395802 CDC45O75419 566 aa16.66■□□□□ 0.26
VAPB-202ENST00000395802 UQCRFS1P1P0C7P4 283 aa16.66■□□□□ 0.26
VAPB-202ENST00000395802 SDSP20132 328 aa16.66■□□□□ 0.26
VAPB-202ENST00000395802 CAVIN4Q5BKX8 364 aa16.66■□□□□ 0.26
VAPB-202ENST00000395802 TSHZ3Q63HK5 1081 aa16.66■□□□□ 0.26
VAPB-202ENST00000395802 SP8Q8IXZ3 490 aa16.66■□□□□ 0.26
VAPB-202ENST00000395802 HELBQ8NG08 1087 aaPredicted RBP16.66■□□□□ 0.26
VAPB-202ENST00000395802 ZNF622Q969S3 477 aaKnown RBP eCLIP16.66■□□□□ 0.261e-11■□□□□ 9.6
VAPB-202ENST00000395802 C10orf71Q711Q0 1435 aa16.65■□□□□ 0.26
VAPB-202ENST00000395802 ANKRD31Q8N7Z5 1873 aa16.65■□□□□ 0.26
VAPB-202ENST00000395802 PPEF1O14829 653 aaPredicted RBP16.65■□□□□ 0.26
VAPB-202ENST00000395802 RILPL2Q969X0 211 aa16.65■□□□□ 0.26
VAPB-202ENST00000395802 GNL3LQ9NVN8 582 aaKnown RBP16.65■□□□□ 0.26
VAPB-202ENST00000395802 SPEF2Q9C093 1822 aa16.64■□□□□ 0.25
VAPB-202ENST00000395802 TGFB2P61812 414 aa16.64■□□□□ 0.25
VAPB-202ENST00000395802 BOLA2Q9H3K6 86 aa16.64■□□□□ 0.25
VAPB-202ENST00000395802 ATP6V0A2Q9Y487 856 aa16.64■□□□□ 0.25
VAPB-202ENST00000395802 HIP1O00291 1037 aa16.63■□□□□ 0.25
VAPB-202ENST00000395802 LRRFIP1Q32MZ4 808 aaKnown RBP16.63■□□□□ 0.25
VAPB-202ENST00000395802 GRIPAP1Q4V328 841 aa16.63■□□□□ 0.25
VAPB-202ENST00000395802 ILDR2Q71H61 639 aa16.63■□□□□ 0.25
VAPB-202ENST00000395802 VPS37DQ86XT2 251 aa16.63■□□□□ 0.25
VAPB-202ENST00000395802 HAUS7Q99871 368 aa16.63■□□□□ 0.25
VAPB-202ENST00000395802 ATF5Q9Y2D1 282 aaPredicted RBP16.63■□□□□ 0.25
VAPB-202ENST00000395802 ZNF804BA4D1E1 1349 aa16.63■□□□□ 0.25
VAPB-202ENST00000395802 ATP2B4P23634 1241 aa16.63■□□□□ 0.25
VAPB-202ENST00000395802 UPF2Q9HAU5 1272 aaKnown RBP16.63■□□□□ 0.25
VAPB-202ENST00000395802 PODXL2Q9NZ53 605 aa16.63■□□□□ 0.25
VAPB-202ENST00000395802 PSDA5PKW4 1024 aaPredicted RBP16.62■□□□□ 0.25
VAPB-202ENST00000395802 CCDC102BQ68D86 513 aa16.62■□□□□ 0.25
VAPB-202ENST00000395802 CC2D2BQ6DHV5 1058 aa16.62■□□□□ 0.25
VAPB-202ENST00000395802 NSFL1CQ9UNZ2 370 aaKnown RBP16.62■□□□□ 0.25
VAPB-202ENST00000395802 TAF1P21675 1872 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms