RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 COL23A1Q86Y22 540 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-205ENST00000392004 FAM184AQ8NB25 1140 aa12.28□□□□□ -0.44
COL6A3-205ENST00000392004 HIBADHP31937 336 aaKnown RBP12.28□□□□□ -0.44
COL6A3-205ENST00000392004 PLCB2Q00722 1185 aa12.28□□□□□ -0.44
COL6A3-205ENST00000392004 SPON1Q9HCB6 807 aa12.28□□□□□ -0.44
COL6A3-205ENST00000392004 SOS1Q07889 1333 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-205ENST00000392004 XRCC6P12956 609 aaKnown RBP eCLIP12.28□□□□□ -0.44
COL6A3-205ENST00000392004 MRE11P49959 708 aa12.28□□□□□ -0.44
COL6A3-205ENST00000392004 AAMPQ13685 434 aa12.28□□□□□ -0.44
COL6A3-205ENST00000392004 PI16Q6UXB8 463 aa12.28□□□□□ -0.44
COL6A3-205ENST00000392004 XAGE2Q96GT9 111 aa12.28□□□□□ -0.44
COL6A3-205ENST00000392004 TBC1D2Q9BYX2 928 aa12.28□□□□□ -0.44
COL6A3-205ENST00000392004 ZNF804AQ7Z570 1209 aa12.27□□□□□ -0.44
COL6A3-205ENST00000392004 CELF1Q92879 486 aaKnown RBP12.27□□□□□ -0.44
COL6A3-205ENST00000392004 LRRC4BQ9NT99 713 aa12.27□□□□□ -0.44
COL6A3-205ENST00000392004 ARHGEF28Q8N1W1 1705 aaKnown RBP12.27□□□□□ -0.44
COL6A3-205ENST00000392004 NAA16Q6N069 864 aaPredicted RBP12.27□□□□□ -0.44
COL6A3-205ENST00000392004 MAGEB6Q8N7X4 407 aa12.27□□□□□ -0.44
COL6A3-205ENST00000392004 TRAK2O60296 914 aa12.27□□□□□ -0.45
COL6A3-205ENST00000392004 PCCAP05165 728 aaPredicted RBP12.27□□□□□ -0.45
COL6A3-205ENST00000392004 PDE1AP54750 535 aa12.27□□□□□ -0.45
COL6A3-205ENST00000392004 CHRNDQ07001 517 aa12.27□□□□□ -0.45
COL6A3-205ENST00000392004 SLC27A3Q5K4L6 730 aa12.27□□□□□ -0.45
COL6A3-205ENST00000392004 OLFM4Q6UX06 510 aa12.27□□□□□ -0.45
COL6A3-205ENST00000392004 TBC1D32Q96NH3 1257 aa12.27□□□□□ -0.45
COL6A3-205ENST00000392004 CAMTA1Q9Y6Y1 1673 aa12.26□□□□□ -0.45
COL6A3-205ENST00000392004 ADORA1P30542 326 aa12.26□□□□□ -0.45
COL6A3-205ENST00000392004 ALDH1B1P30837 517 aa12.26□□□□□ -0.45
COL6A3-205ENST00000392004 CLCN1P35523 988 aa12.26□□□□□ -0.45
COL6A3-205ENST00000392004 LRRC2Q9BYS8 371 aa12.26□□□□□ -0.45
COL6A3-205ENST00000392004 SAP30BPQ9UHR5 308 aaKnown RBP12.26□□□□□ -0.45
COL6A3-205ENST00000392004 VPS37CA5D8V6 355 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-205ENST00000392004 DDX11L8A8MPP1 907 aa12.26□□□□□ -0.45
COL6A3-205ENST00000392004 RASSF8Q8NHQ8 419 aa12.26□□□□□ -0.45
COL6A3-205ENST00000392004 SLC4A9Q96Q91 983 aa12.26□□□□□ -0.45
COL6A3-205ENST00000392004 PDGFDQ9GZP0 370 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-205ENST00000392004 H3BQV1 296 aa12.25□□□□□ -0.45
COL6A3-205ENST00000392004 EIF5P55010 431 aaKnown RBP12.25□□□□□ -0.45
COL6A3-205ENST00000392004 IFFO2Q5TF58 517 aa12.25□□□□□ -0.45
COL6A3-205ENST00000392004 CCDC129Q6ZRS4 1044 aa12.25□□□□□ -0.45
COL6A3-205ENST00000392004 CCDC144CPQ8IYA2 1237 aa12.25□□□□□ -0.45
COL6A3-205ENST00000392004 TRMT2AQ8IZ69 625 aaKnown RBP12.25□□□□□ -0.45
COL6A3-205ENST00000392004 JAKMIP1Q96N16 626 aaKnown RBP12.25□□□□□ -0.45
COL6A3-205ENST00000392004 SCAF8Q9UPN6 1271 aaKnown RBP12.25□□□□□ -0.45
COL6A3-205ENST00000392004 CLSTN1O94985 981 aa12.25□□□□□ -0.45
COL6A3-205ENST00000392004 ZSCAN25Q6NSZ9 544 aa12.25□□□□□ -0.45
COL6A3-205ENST00000392004 NIM1KQ8IY84 436 aa12.25□□□□□ -0.45
COL6A3-205ENST00000392004 EYA3Q99504 573 aa12.25□□□□□ -0.45
COL6A3-205ENST00000392004 PXDNQ92626 1479 aa12.25□□□□□ -0.45
COL6A3-205ENST00000392004 RRP9O43818 475 aaKnown RBP12.25□□□□□ -0.45
COL6A3-205ENST00000392004 SDSP20132 328 aa12.25□□□□□ -0.45
COL6A3-205ENST00000392004 TNNI3KQ59H18 835 aa12.25□□□□□ -0.45
COL6A3-205ENST00000392004 ANP32BQ92688 251 aaKnown RBP12.25□□□□□ -0.45
COL6A3-205ENST00000392004 FPGT-TNNI3KV9GXZ4 949 aa12.25□□□□□ -0.45
COL6A3-205ENST00000392004 KDRP35968 1356 aa12.25□□□□□ -0.45
COL6A3-205ENST00000392004 LDHBP07195 334 aaKnown RBP12.24□□□□□ -0.45
COL6A3-205ENST00000392004 CHST3Q7LGC8 479 aa12.24□□□□□ -0.45
COL6A3-205ENST00000392004 EAF2Q96CJ1 260 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-205ENST00000392004 DCTPP1Q9H773 170 aa12.24□□□□□ -0.45
COL6A3-205ENST00000392004 ZNF277Q9NRM2 450 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-205ENST00000392004 ZAP70P43403 619 aa12.24□□□□□ -0.45
COL6A3-205ENST00000392004 ZRSR1Q15695 479 aaKnown RBP12.24□□□□□ -0.45
COL6A3-205ENST00000392004 TTLL6Q8N841 843 aa12.24□□□□□ -0.45
COL6A3-205ENST00000392004 CNKSR1Q969H4 720 aa12.24□□□□□ -0.45
COL6A3-205ENST00000392004 TLR7Q9NYK1 1049 aaKnown RBP12.24□□□□□ -0.45
COL6A3-205ENST00000392004 STX8Q9UNK0 236 aa12.24□□□□□ -0.45
COL6A3-205ENST00000392004 MYCNP04198 464 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-205ENST00000392004 PUM3Q15397 648 aaKnown RBP12.24□□□□□ -0.45
COL6A3-205ENST00000392004 MFSD14BQ5SR56 506 aa12.24□□□□□ -0.45
COL6A3-205ENST00000392004 TTLL11Q8NHH1 800 aa12.24□□□□□ -0.45
COL6A3-205ENST00000392004 ANKRD2Q9GZV1 360 aa12.24□□□□□ -0.45
COL6A3-205ENST00000392004 ANTXR1Q9H6X2 564 aa12.24□□□□□ -0.45
COL6A3-205ENST00000392004 PAG1Q9NWQ8 432 aa12.24□□□□□ -0.45
COL6A3-205ENST00000392004 GOLGA6L22H0YM25 854 aa12.23□□□□□ -0.45
COL6A3-205ENST00000392004 EIF6P56537 245 aaKnown RBP12.23□□□□□ -0.45
COL6A3-205ENST00000392004 DALRD3Q5D0E6 543 aaKnown RBP12.23□□□□□ -0.45
COL6A3-205ENST00000392004 TTLL5Q6EMB2 1281 aa12.23□□□□□ -0.45
COL6A3-205ENST00000392004 PPEF1O14829 653 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-205ENST00000392004 MYO1BO43795 1136 aa12.23□□□□□ -0.45
COL6A3-205ENST00000392004 PRDM1O75626 825 aa12.23□□□□□ -0.45
COL6A3-205ENST00000392004 PHKA1P46020 1223 aa12.23□□□□□ -0.45
COL6A3-205ENST00000392004 FEZ1Q99689 392 aa12.23□□□□□ -0.45
COL6A3-205ENST00000392004 PANK2Q9BZ23 570 aa12.23□□□□□ -0.45
COL6A3-205ENST00000392004 SLC3A2P08195 630 aaKnown RBP12.23□□□□□ -0.45
COL6A3-205ENST00000392004 LMOD1P29536 600 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-205ENST00000392004 INTS5Q6P9B9 1019 aaKnown RBP12.23□□□□□ -0.45
COL6A3-205ENST00000392004 CPLX2Q6PUV4 134 aaKnown RBP12.23□□□□□ -0.45
COL6A3-205ENST00000392004 AATFQ9NY61 560 aaKnown RBP eCLIP12.23□□□□□ -0.45
COL6A3-205ENST00000392004 UBAC1Q9BSL1 405 aa12.22□□□□□ -0.45
COL6A3-205ENST00000392004 VAT1LQ9HCJ6 419 aa12.22□□□□□ -0.45
COL6A3-205ENST00000392004 SLC4A4Q9Y6R1 1079 aa12.22□□□□□ -0.45
COL6A3-205ENST00000392004 MCM9Q9NXL9 1143 aa12.22□□□□□ -0.45
COL6A3-205ENST00000392004 ERBB4Q15303 1308 aa12.22□□□□□ -0.45
COL6A3-205ENST00000392004 CLRN2A0PK11 232 aa12.22□□□□□ -0.45
COL6A3-205ENST00000392004 BAG3O95817 575 aa12.21□□□□□ -0.45
COL6A3-205ENST00000392004 UQCRFS1P1P0C7P4 283 aa12.21□□□□□ -0.45
COL6A3-205ENST00000392004 ZNF827Q17R98 1081 aa12.21□□□□□ -0.45
COL6A3-205ENST00000392004 PRR5LQ6MZQ0 368 aa12.21□□□□□ -0.45
COL6A3-205ENST00000392004 GRPEL1Q9HAV7 217 aa12.21□□□□□ -0.45
COL6A3-205ENST00000392004 PIM2Q9P1W9 311 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms