RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 FOSBP53539 338 aa19.24■□□□□ 0.67
NKX3-1-201ENST00000380871 TNMDQ9H2S6 317 aa19.24■□□□□ 0.67
NKX3-1-201ENST00000380871 PPFIA3O75145 1194 aa19.23■□□□□ 0.67
NKX3-1-201ENST00000380871 NR1I2O75469 434 aa19.23■□□□□ 0.67
NKX3-1-201ENST00000380871 CBX8Q9HC52 389 aa19.23■□□□□ 0.67
NKX3-1-201ENST00000380871 ASAP1Q9ULH1 1129 aa19.23■□□□□ 0.67
NKX3-1-201ENST00000380871 GPTP24298 496 aa19.23■□□□□ 0.67
NKX3-1-201ENST00000380871 HMGN5P82970 282 aaKnown RBP19.23■□□□□ 0.67
NKX3-1-201ENST00000380871 LEO1Q8WVC0 666 aaPredicted RBP19.23■□□□□ 0.67
NKX3-1-201ENST00000380871 PCDH11XQ9BZA7 1347 aa19.23■□□□□ 0.67
NKX3-1-201ENST00000380871 PCDH11YQ9BZA8 1340 aa19.23■□□□□ 0.67
NKX3-1-201ENST00000380871 PGBD1Q96JS3 809 aa19.22■□□□□ 0.67
NKX3-1-201ENST00000380871 UTYO14607 1347 aa19.22■□□□□ 0.67
NKX3-1-201ENST00000380871 CEBPZQ03701 1054 aaKnown RBP19.22■□□□□ 0.67
NKX3-1-201ENST00000380871 CWC25Q9NXE8 425 aaPredicted RBP19.22■□□□□ 0.67
NKX3-1-201ENST00000380871 BTG4Q9NY30 223 aa19.22■□□□□ 0.67
NKX3-1-201ENST00000380871 TMOD3Q9NYL9 352 aa19.22■□□□□ 0.67
NKX3-1-201ENST00000380871 GOLGA6L4A6NEF3 574 aa19.22■□□□□ 0.67
NKX3-1-201ENST00000380871 TAF5LO75529 589 aa19.22■□□□□ 0.67
NKX3-1-201ENST00000380871 LRRC24Q50LG9 513 aa19.22■□□□□ 0.67
NKX3-1-201ENST00000380871 SNRKQ9NRH2 765 aa19.22■□□□□ 0.67
NKX3-1-201ENST00000380871 RNF20Q5VTR2 975 aa19.21■□□□□ 0.67
NKX3-1-201ENST00000380871 DNAJC10Q8IXB1 793 aa19.21■□□□□ 0.67
NKX3-1-201ENST00000380871 PUS3Q9BZE2 481 aaKnown RBP19.21■□□□□ 0.67
NKX3-1-201ENST00000380871 BCL2L12Q9HB09 334 aa19.21■□□□□ 0.67
NKX3-1-201ENST00000380871 NAP1L2Q9ULW6 460 aaPredicted RBP19.21■□□□□ 0.67
NKX3-1-201ENST00000380871 KIF3AQ9Y496 699 aa19.21■□□□□ 0.67
NKX3-1-201ENST00000380871 HIP1O00291 1037 aa19.21■□□□□ 0.67
NKX3-1-201ENST00000380871 RIOK3O14730 519 aaKnown RBP19.21■□□□□ 0.67
NKX3-1-201ENST00000380871 SYNE4Q8N205 404 aa19.21■□□□□ 0.67
NKX3-1-201ENST00000380871 GOLIM4O00461 696 aa19.2■□□□□ 0.66
NKX3-1-201ENST00000380871 GTF2F1P35269 517 aaKnown RBP eCLIP19.2■□□□□ 0.66
NKX3-1-201ENST00000380871 RFX5P48382 616 aaPredicted RBP19.2■□□□□ 0.66
NKX3-1-201ENST00000380871 ELP1O95163 1332 aa19.2■□□□□ 0.66
NKX3-1-201ENST00000380871 PDCP20941 246 aa19.2■□□□□ 0.66
NKX3-1-201ENST00000380871 CCDC186Q7Z3E2 898 aa19.2■□□□□ 0.66
NKX3-1-201ENST00000380871 FAM89AQ96GI7 184 aa19.2■□□□□ 0.66
NKX3-1-201ENST00000380871 FTOQ9C0B1 505 aaKnown RBP eCLIP19.2■□□□□ 0.66
NKX3-1-201ENST00000380871 TAOK2Q9UL54 1235 aa19.2■□□□□ 0.66
NKX3-1-201ENST00000380871 OVOS2A0A0G2JMS6 1433 aa19.2■□□□□ 0.66
NKX3-1-201ENST00000380871 MTERF4Q7Z6M4 381 aaKnown RBP19.2■□□□□ 0.66
NKX3-1-201ENST00000380871 BICD2Q8TD16 824 aa19.2■□□□□ 0.66
NKX3-1-201ENST00000380871 DNAJC25Q9H1X3 360 aa19.2■□□□□ 0.66
NKX3-1-201ENST00000380871 COPRSQ9NQ92 184 aa19.2■□□□□ 0.66
NKX3-1-201ENST00000380871 A0A087WWV3 80 aa19.19■□□□□ 0.66
NKX3-1-201ENST00000380871 BRF1Q92994 677 aa19.19■□□□□ 0.66
NKX3-1-201ENST00000380871 CCDC94Q9BW85 323 aaPredicted RBP19.19■□□□□ 0.66
NKX3-1-201ENST00000380871 STRCP1A6NGW2 1772 aa19.19■□□□□ 0.66
NKX3-1-201ENST00000380871 FGD1P98174 961 aa19.19■□□□□ 0.66
NKX3-1-201ENST00000380871 DRC7Q8IY82 874 aa19.19■□□□□ 0.66
NKX3-1-201ENST00000380871 ANKRD1Q15327 319 aa19.18■□□□□ 0.66
NKX3-1-201ENST00000380871 TAF7LQ5H9L4 462 aa19.18■□□□□ 0.66
NKX3-1-201ENST00000380871 GORABQ5T7V8 394 aa19.18■□□□□ 0.66
NKX3-1-201ENST00000380871 HSP90B1P14625 803 aaKnown RBP19.18■□□□□ 0.66
NKX3-1-201ENST00000380871 Q6ZUG5 572 aa19.18■□□□□ 0.66
NKX3-1-201ENST00000380871 BCL11BQ9C0K0 894 aaPredicted RBP19.18■□□□□ 0.66
NKX3-1-201ENST00000380871 SCAND2PQ9GZW5 306 aaPredicted RBP19.18■□□□□ 0.66
NKX3-1-201ENST00000380871 TRIM5Q9C035 493 aa19.17■□□□□ 0.66
NKX3-1-201ENST00000380871 KIF1AQ12756 1690 aa19.17■□□□□ 0.66
NKX3-1-201ENST00000380871 CAMTA1Q9Y6Y1 1673 aa19.17■□□□□ 0.66
NKX3-1-201ENST00000380871 FKBP4Q02790 459 aaKnown RBP eCLIP19.17■□□□□ 0.66
NKX3-1-201ENST00000380871 GTF3C6Q969F1 213 aa19.17■□□□□ 0.66
NKX3-1-201ENST00000380871 CLSTN2Q9H4D0 955 aa19.17■□□□□ 0.66
NKX3-1-201ENST00000380871 ZNF609O15014 1411 aa19.17■□□□□ 0.66
NKX3-1-201ENST00000380871 CYP21A2P08686 494 aa19.16■□□□□ 0.66
NKX3-1-201ENST00000380871 CBX1P83916 185 aa19.16■□□□□ 0.66
NKX3-1-201ENST00000380871 FOXO4P98177 505 aa19.16■□□□□ 0.66
NKX3-1-201ENST00000380871 HSP90AB3PQ58FF7 597 aa19.16■□□□□ 0.66
NKX3-1-201ENST00000380871 C16orf45Q96MC5 204 aaPredicted RBP19.16■□□□□ 0.66
NKX3-1-201ENST00000380871 PRDM4Q9UKN5 801 aa19.16■□□□□ 0.66
NKX3-1-201ENST00000380871 ALS2Q96Q42 1657 aa19.16■□□□□ 0.66
NKX3-1-201ENST00000380871 A0A0G2JLW4 131 aa19.16■□□□□ 0.66
NKX3-1-201ENST00000380871 GOLGA6L6A8MZA4 724 aa19.16■□□□□ 0.66
NKX3-1-201ENST00000380871 RESTQ13127 1097 aa19.16■□□□□ 0.66
NKX3-1-201ENST00000380871 PPP4R3BQ5MIZ7 849 aa19.16■□□□□ 0.66
NKX3-1-201ENST00000380871 NEK1Q96PY6 1258 aa19.16■□□□□ 0.66
NKX3-1-201ENST00000380871 CARD10Q9BWT7 1032 aa19.16■□□□□ 0.66
NKX3-1-201ENST00000380871 PHRF1Q9P1Y6 1649 aaKnown RBP19.16■□□□□ 0.66
NKX3-1-201ENST00000380871 ATP2B3Q16720 1220 aa19.15■□□□□ 0.66
NKX3-1-201ENST00000380871 JCADQ9P266 1359 aa19.15■□□□□ 0.66
NKX3-1-201ENST00000380871 ERVV-2B6SEH9 535 aa19.15■□□□□ 0.66
NKX3-1-201ENST00000380871 ZNF165P49910 485 aa19.15■□□□□ 0.66
NKX3-1-201ENST00000380871 STOX1Q6ZVD7 989 aa19.15■□□□□ 0.66
NKX3-1-201ENST00000380871 ADAMTS2O95450 1211 aa19.15■□□□□ 0.66
NKX3-1-201ENST00000380871 SCRN1Q12765 414 aa19.15■□□□□ 0.66
NKX3-1-201ENST00000380871 PIGBQ92521 554 aa19.15■□□□□ 0.66
NKX3-1-201ENST00000380871 H7C1W4 665 aa19.14■□□□□ 0.65
NKX3-1-201ENST00000380871 ZNF75DP51815 510 aa19.14■□□□□ 0.65
NKX3-1-201ENST00000380871 C5P01031 1676 aa19.14■□□□□ 0.65
NKX3-1-201ENST00000380871 H3BQV1 296 aa19.14■□□□□ 0.65
NKX3-1-201ENST00000380871 ATP5JP18859 108 aa19.14■□□□□ 0.65
NKX3-1-201ENST00000380871 CASP7P55210 303 aa19.14■□□□□ 0.65
NKX3-1-201ENST00000380871 CCDC144BQ3MJ40 725 aa19.14■□□□□ 0.65
NKX3-1-201ENST00000380871 IFFO2Q5TF58 517 aa19.14■□□□□ 0.65
NKX3-1-201ENST00000380871 USPL1Q5W0Q7 1092 aa19.14■□□□□ 0.65
NKX3-1-201ENST00000380871 CCDC144CPQ8IYA2 1237 aa19.14■□□□□ 0.65
NKX3-1-201ENST00000380871 DDX19AQ9NUU7 478 aaKnown RBP19.14■□□□□ 0.65
NKX3-1-201ENST00000380871 HMG20BQ9P0W2 317 aa19.14■□□□□ 0.65
NKX3-1-201ENST00000380871 SOS2Q07890 1332 aaPredicted RBP19.14■□□□□ 0.65
NKX3-1-201ENST00000380871 CPDO75976 1380 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms