RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 CYP19A1P11511 503 aaPredicted RBP12.9□□□□□ -0.34
NEDD9-201ENST00000379433 HAND2P61296 217 aa12.9□□□□□ -0.34
NEDD9-201ENST00000379433 CAVIN1Q6NZI2 390 aaKnown RBP12.9□□□□□ -0.34
NEDD9-201ENST00000379433 PANK2Q9BZ23 570 aa12.9□□□□□ -0.34
NEDD9-201ENST00000379433 PDRG1Q9NUG6 133 aa12.9□□□□□ -0.34
NEDD9-201ENST00000379433 A0A0G2JLW4 131 aa12.9□□□□□ -0.35
NEDD9-201ENST00000379433 DDX11L8A8MPP1 907 aa12.9□□□□□ -0.35
NEDD9-201ENST00000379433 EYA2O00167 538 aa12.9□□□□□ -0.35
NEDD9-201ENST00000379433 CASP7P55210 303 aa12.9□□□□□ -0.35
NEDD9-201ENST00000379433 TTC39AQ5SRH9 613 aa12.9□□□□□ -0.35
NEDD9-201ENST00000379433 VPS53Q5VIR6 699 aa12.9□□□□□ -0.35
NEDD9-201ENST00000379433 ATG9AQ7Z3C6 839 aa12.9□□□□□ -0.35
NEDD9-201ENST00000379433 SCN11AQ9UI33 1791 aa12.89□□□□□ -0.35
NEDD9-201ENST00000379433 CCDC171Q6TFL3 1326 aa12.89□□□□□ -0.35
NEDD9-201ENST00000379433 VPS37CA5D8V6 355 aaPredicted RBP12.89□□□□□ -0.35
NEDD9-201ENST00000379433 MEX3CQ5U5Q3 659 aaKnown RBP12.89□□□□□ -0.35
NEDD9-201ENST00000379433 FERMT3Q86UX7 667 aa12.89□□□□□ -0.35
NEDD9-201ENST00000379433 RAB11FIP4Q86YS3 637 aa12.89□□□□□ -0.35
NEDD9-201ENST00000379433 RBM27Q9P2N5 1060 aaKnown RBP12.89□□□□□ -0.35
NEDD9-201ENST00000379433 CREB3L3Q68CJ9 461 aa12.89□□□□□ -0.35
NEDD9-201ENST00000379433 CRKLP46109 303 aaKnown RBP12.88□□□□□ -0.35
NEDD9-201ENST00000379433 CYP46A1Q9Y6A2 500 aa12.88□□□□□ -0.35
NEDD9-201ENST00000379433 LOC102724428A0A0B4J2F2 783 aa12.88□□□□□ -0.35
NEDD9-201ENST00000379433 SIK1P57059 783 aa12.88□□□□□ -0.35
NEDD9-201ENST00000379433 SEC31BQ9NQW1 1179 aa12.88□□□□□ -0.35
NEDD9-201ENST00000379433 NIP7Q9Y221 180 aaKnown RBP eCLIP12.88□□□□□ -0.35
NEDD9-201ENST00000379433 AOX1Q06278 1338 aa12.88□□□□□ -0.35
NEDD9-201ENST00000379433 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.88□□□□□ -0.35
NEDD9-201ENST00000379433 GOLGA6L3A6NEY3 463 aa12.88□□□□□ -0.35
NEDD9-201ENST00000379433 SCARF1Q14162 830 aa12.88□□□□□ -0.35
NEDD9-201ENST00000379433 RUFY3Q7L099 469 aa12.88□□□□□ -0.35
NEDD9-201ENST00000379433 NLRP10Q86W26 655 aa12.88□□□□□ -0.35
NEDD9-201ENST00000379433 PAG1Q9NWQ8 432 aa12.88□□□□□ -0.35
NEDD9-201ENST00000379433 ZHX1Q9UKY1 873 aaPredicted RBP12.88□□□□□ -0.35
NEDD9-201ENST00000379433 MAP3K15Q6ZN16 1313 aa12.87□□□□□ -0.35
NEDD9-201ENST00000379433 IDH1O75874 414 aaKnown RBP12.87□□□□□ -0.35
NEDD9-201ENST00000379433 RABL6Q3YEC7 729 aaPredicted RBP12.87□□□□□ -0.35
NEDD9-201ENST00000379433 GIGYF2Q6Y7W6 1299 aaKnown RBP12.87□□□□□ -0.35
NEDD9-201ENST00000379433 IL15P40933 162 aaPredicted RBP12.87□□□□□ -0.35
NEDD9-201ENST00000379433 NUCB2P80303 420 aa12.87□□□□□ -0.35
NEDD9-201ENST00000379433 ITPK1Q13572 414 aa12.87□□□□□ -0.35
NEDD9-201ENST00000379433 XAGE2Q96GT9 111 aa12.87□□□□□ -0.35
NEDD9-201ENST00000379433 ZDHHC9Q9Y397 364 aa12.87□□□□□ -0.35
NEDD9-201ENST00000379433 DDIT3P35638 169 aa12.87□□□□□ -0.35
NEDD9-201ENST00000379433 TTLL5Q6EMB2 1281 aa12.87□□□□□ -0.35
NEDD9-201ENST00000379433 TEX13AQ9BXU3 409 aaPredicted RBP12.87□□□□□ -0.35
NEDD9-201ENST00000379433 SMC3Q9UQE7 1217 aa12.87□□□□□ -0.35
NEDD9-201ENST00000379433 SLC27A2O14975 620 aa12.86□□□□□ -0.35
NEDD9-201ENST00000379433 CCDC158Q5M9N0 1113 aa12.86□□□□□ -0.35
NEDD9-201ENST00000379433 DDX11Q96FC9 970 aa12.86□□□□□ -0.35
NEDD9-201ENST00000379433 MAFGO15525 162 aa12.86□□□□□ -0.35
NEDD9-201ENST00000379433 ZBTB38Q8NAP3 1195 aaPredicted RBP12.86□□□□□ -0.35
NEDD9-201ENST00000379433 CIZ1Q9ULV3 898 aaPredicted RBP12.86□□□□□ -0.35
NEDD9-201ENST00000379433 SPATA31A1Q5TZJ5 1347 aa12.86□□□□□ -0.35
NEDD9-201ENST00000379433 ATP5JP18859 108 aa12.85□□□□□ -0.35
NEDD9-201ENST00000379433 ZAP70P43403 619 aa12.85□□□□□ -0.35
NEDD9-201ENST00000379433 FAM173BQ6P4H8 233 aa12.85□□□□□ -0.35
NEDD9-201ENST00000379433 BLOC1S2Q6QNY1 142 aa12.85□□□□□ -0.35
NEDD9-201ENST00000379433 WTIPA6NIX2 430 aaPredicted RBP12.85□□□□□ -0.35
NEDD9-201ENST00000379433 DNTTIP2Q5QJE6 756 aaKnown RBP12.85□□□□□ -0.35
NEDD9-201ENST00000379433 SUSD4Q5VX71 490 aa12.85□□□□□ -0.35
NEDD9-201ENST00000379433 TMTC2Q8N394 836 aa12.85□□□□□ -0.35
NEDD9-201ENST00000379433 MPHOSPH8Q99549 860 aa12.85□□□□□ -0.35
NEDD9-201ENST00000379433 ISCA1Q9BUE6 129 aa12.85□□□□□ -0.35
NEDD9-201ENST00000379433 ANKRD18BA2A2Z9 1011 aa12.85□□□□□ -0.35
NEDD9-201ENST00000379433 FIBPO43427 364 aa12.85□□□□□ -0.35
NEDD9-201ENST00000379433 AXDND1Q5T1B0 1012 aaPredicted RBP12.85□□□□□ -0.35
NEDD9-201ENST00000379433 UBN2Q6ZU65 1347 aa12.84□□□□□ -0.35
NEDD9-201ENST00000379433 ATP2B3Q16720 1220 aa12.84□□□□□ -0.35
NEDD9-201ENST00000379433 TTLL11Q8NHH1 800 aa12.84□□□□□ -0.35
NEDD9-201ENST00000379433 LIMCH1Q9UPQ0 1083 aa12.84□□□□□ -0.35
NEDD9-201ENST00000379433 JAG2Q9Y219 1238 aa12.84□□□□□ -0.35
NEDD9-201ENST00000379433 FAM43AQ8N2R8 423 aa12.84□□□□□ -0.35
NEDD9-201ENST00000379433 ANP32BQ92688 251 aaKnown RBP12.84□□□□□ -0.35
NEDD9-201ENST00000379433 CCDC87Q9NVE4 849 aa12.84□□□□□ -0.35
NEDD9-201ENST00000379433 NSFL1CQ9UNZ2 370 aaKnown RBP12.84□□□□□ -0.35
NEDD9-201ENST00000379433 RNF20Q5VTR2 975 aa12.83□□□□□ -0.35
NEDD9-201ENST00000379433 ROBO1Q9Y6N7 1651 aa12.83□□□□□ -0.35
NEDD9-201ENST00000379433 GJB2P29033 226 aa12.83□□□□□ -0.36
NEDD9-201ENST00000379433 CTSWP56202 376 aa12.83□□□□□ -0.36
NEDD9-201ENST00000379433 CCT2P78371 535 aaKnown RBP12.83□□□□□ -0.36
NEDD9-201ENST00000379433 ME3Q16798 604 aa12.83□□□□□ -0.36
NEDD9-201ENST00000379433 TPCN1Q9ULQ1 816 aa12.83□□□□□ -0.36
NEDD9-201ENST00000379433 ERBB4Q15303 1308 aa12.83□□□□□ -0.36
NEDD9-201ENST00000379433 PCCAP05165 728 aaPredicted RBP12.83□□□□□ -0.36
NEDD9-201ENST00000379433 NECTIN1Q15223 517 aa12.83□□□□□ -0.36
NEDD9-201ENST00000379433 MCMDC2Q4G0Z9 681 aa12.83□□□□□ -0.36
NEDD9-201ENST00000379433 GAS2L3Q86XJ1 694 aa12.83□□□□□ -0.36
NEDD9-201ENST00000379433 HIP1O00291 1037 aa12.82□□□□□ -0.36
NEDD9-201ENST00000379433 MAP4K1Q92918 833 aa12.82□□□□□ -0.36
NEDD9-201ENST00000379433 HAUS7Q99871 368 aa12.82□□□□□ -0.36
NEDD9-201ENST00000379433 SRP68Q9UHB9 627 aaKnown RBP12.82□□□□□ -0.36
NEDD9-201ENST00000379433 USP21Q9UK80 565 aa12.82□□□□□ -0.36
NEDD9-201ENST00000379433 SIPA1L3O60292 1781 aaPredicted RBP12.82□□□□□ -0.36
NEDD9-201ENST00000379433 CEBPZQ03701 1054 aaKnown RBP12.82□□□□□ -0.36
NEDD9-201ENST00000379433 KBTBD3Q8NAB2 608 aa12.82□□□□□ -0.36
NEDD9-201ENST00000379433 RNF214Q8ND24 703 aa12.82□□□□□ -0.36
NEDD9-201ENST00000379433 CHMP4CQ96CF2 233 aa12.82□□□□□ -0.36
NEDD9-201ENST00000379433 MCM2P49736 904 aa12.82□□□□□ -0.36
NEDD9-201ENST00000379433 BRF1Q92994 677 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms