RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 AP5Z1O43299 807 aa23.15■■□□□ 1.3
SHROOM1-202ENST00000378676 KDM4AO75164 1064 aa23.14■■□□□ 1.3
SHROOM1-202ENST00000378676 LRRC2Q9BYS8 371 aa23.14■■□□□ 1.3
SHROOM1-202ENST00000378676 SH3TC1Q8TE82 1336 aa23.14■■□□□ 1.3
SHROOM1-202ENST00000378676 TERF1P54274 439 aa23.14■■□□□ 1.29
SHROOM1-202ENST00000378676 TFIP11Q9UBB9 837 aaKnown RBP23.14■■□□□ 1.29
SHROOM1-202ENST00000378676 PDIA4P13667 645 aaKnown RBP23.13■■□□□ 1.29
SHROOM1-202ENST00000378676 NEUROD6Q96NK8 337 aa23.13■■□□□ 1.29
SHROOM1-202ENST00000378676 GOLIM4O00461 696 aa23.13■■□□□ 1.29
SHROOM1-202ENST00000378676 A1BGP04217 495 aa23.13■■□□□ 1.29
SHROOM1-202ENST00000378676 CWC25Q9NXE8 425 aaPredicted RBP23.13■■□□□ 1.29
SHROOM1-202ENST00000378676 HSP90B1P14625 803 aaKnown RBP23.12■■□□□ 1.29
SHROOM1-202ENST00000378676 KIAA2012Q0VF49 1180 aa23.12■■□□□ 1.29
SHROOM1-202ENST00000378676 ZBTB3Q9H5J0 574 aa23.12■■□□□ 1.29
SHROOM1-202ENST00000378676 TOGARAM1Q9Y4F4 1720 aa23.12■■□□□ 1.29
SHROOM1-202ENST00000378676 PCDH11XQ9BZA7 1347 aa23.12■■□□□ 1.29
SHROOM1-202ENST00000378676 PCDH11YQ9BZA8 1340 aa23.12■■□□□ 1.29
SHROOM1-202ENST00000378676 TIMM10P62072 90 aa23.12■■□□□ 1.29
SHROOM1-202ENST00000378676 BRF1Q92994 677 aa23.12■■□□□ 1.29
SHROOM1-202ENST00000378676 ZNF594Q96JF6 807 aaPredicted RBP23.12■■□□□ 1.29
SHROOM1-202ENST00000378676 PAG1Q9NWQ8 432 aa23.12■■□□□ 1.29
SHROOM1-202ENST00000378676 SPEF2Q9C093 1822 aa23.11■■□□□ 1.29
SHROOM1-202ENST00000378676 LRRC24Q50LG9 513 aa23.11■■□□□ 1.29
SHROOM1-202ENST00000378676 KLHL34Q8N239 644 aa23.11■■□□□ 1.29
SHROOM1-202ENST00000378676 LEO1Q8WVC0 666 aaPredicted RBP23.11■■□□□ 1.29
SHROOM1-202ENST00000378676 SPATA32Q96LK8 384 aa23.11■■□□□ 1.29
SHROOM1-202ENST00000378676 ABCA3Q99758 1704 aa23.11■■□□□ 1.29
SHROOM1-202ENST00000378676 CAMK4Q16566 473 aa23.11■■□□□ 1.29
SHROOM1-202ENST00000378676 NUP62CLQ9H1M0 184 aa23.11■■□□□ 1.29
SHROOM1-202ENST00000378676 TTC12Q9H892 705 aaPredicted RBP23.11■■□□□ 1.29
SHROOM1-202ENST00000378676 A0A0G2JLW4 131 aa23.1■■□□□ 1.29
SHROOM1-202ENST00000378676 RESTQ13127 1097 aa23.1■■□□□ 1.29
SHROOM1-202ENST00000378676 NWD2Q9ULI1 1742 aa23.1■■□□□ 1.29
SHROOM1-202ENST00000378676 WDR17Q8IZU2 1322 aa23.1■■□□□ 1.29
SHROOM1-202ENST00000378676 SCRN1Q12765 414 aa23.09■■□□□ 1.29
SHROOM1-202ENST00000378676 ZCRB1Q8TBF4 217 aaKnown RBP23.09■■□□□ 1.29
SHROOM1-202ENST00000378676 DDX11Q96FC9 970 aa23.09■■□□□ 1.29
SHROOM1-202ENST00000378676 SCAND2PQ9GZW5 306 aaPredicted RBP23.09■■□□□ 1.29
SHROOM1-202ENST00000378676 CCDC192P0DO97 292 aa23.09■■□□□ 1.29
SHROOM1-202ENST00000378676 PLCB2Q00722 1185 aa23.09■■□□□ 1.29
SHROOM1-202ENST00000378676 MAP3K11Q16584 847 aa23.08■■□□□ 1.29
SHROOM1-202ENST00000378676 DACT1Q9NYF0 836 aa23.08■■□□□ 1.29
SHROOM1-202ENST00000378676 COL5A2P05997 1499 aaPredicted RBP23.08■■□□□ 1.29
SHROOM1-202ENST00000378676 TOM1L2Q6ZVM7 507 aa23.08■■□□□ 1.29
SHROOM1-202ENST00000378676 GPR108Q9NPR9 543 aa23.08■■□□□ 1.29
SHROOM1-202ENST00000378676 MRVI1Q9Y6F6 885 aa23.08■■□□□ 1.29
SHROOM1-202ENST00000378676 IL15P40933 162 aaPredicted RBP23.07■■□□□ 1.28
SHROOM1-202ENST00000378676 PGBD1Q96JS3 809 aa23.07■■□□□ 1.28
SHROOM1-202ENST00000378676 UQCRHLA0A096LP55 91 aa23.07■■□□□ 1.28
SHROOM1-202ENST00000378676 EYA2O00167 538 aa23.07■■□□□ 1.28
SHROOM1-202ENST00000378676 UQCRHP07919 91 aa23.07■■□□□ 1.28
SHROOM1-202ENST00000378676 TYRO3Q06418 890 aa23.07■■□□□ 1.28
SHROOM1-202ENST00000378676 ZMYM1Q5SVZ6 1142 aa23.07■■□□□ 1.28
SHROOM1-202ENST00000378676 PUS3Q9BZE2 481 aaKnown RBP23.07■■□□□ 1.28
SHROOM1-202ENST00000378676 HELLSQ9NRZ9 838 aa23.07■■□□□ 1.28
SHROOM1-202ENST00000378676 MYH7P12883 1935 aa23.07■■□□□ 1.28
SHROOM1-202ENST00000378676 TNS2Q63HR2 1409 aa23.07■■□□□ 1.28
SHROOM1-202ENST00000378676 CKAP2LQ8IYA6 745 aa23.06■■□□□ 1.28
SHROOM1-202ENST00000378676 C17orf53Q8N3J3 647 aaPredicted RBP23.06■■□□□ 1.28
SHROOM1-202ENST00000378676 PRDM11Q9NQV5 511 aa23.06■■□□□ 1.28
SHROOM1-202ENST00000378676 MAST3O60307 1309 aa23.06■■□□□ 1.28
SHROOM1-202ENST00000378676 SMARCC2Q8TAQ2 1214 aa23.06■■□□□ 1.28
SHROOM1-202ENST00000378676 PIBF1Q8WXW3 757 aa23.06■■□□□ 1.28
SHROOM1-202ENST00000378676 A0A1B0GUL7 405 aa23.05■■□□□ 1.28
SHROOM1-202ENST00000378676 ERVV-2B6SEH9 535 aa23.05■■□□□ 1.28
SHROOM1-202ENST00000378676 CCDC191Q8NCU4 936 aa23.05■■□□□ 1.28
SHROOM1-202ENST00000378676 DSCC1Q9BVC3 393 aa23.05■■□□□ 1.28
SHROOM1-202ENST00000378676 PFKFB2O60825 505 aa23.05■■□□□ 1.28
SHROOM1-202ENST00000378676 APOBRQ0VD83 1088 aa23.05■■□□□ 1.28
SHROOM1-202ENST00000378676 NSUN7Q8NE18 718 aaKnown RBP23.05■■□□□ 1.28
SHROOM1-202ENST00000378676 TNMDQ9H2S6 317 aa23.05■■□□□ 1.28
SHROOM1-202ENST00000378676 GOLGA6L4A6NEF3 574 aa23.04■■□□□ 1.28
SHROOM1-202ENST00000378676 CTDNEP1O95476 244 aa23.04■■□□□ 1.28
SHROOM1-202ENST00000378676 IFIT1P09914 478 aaKnown RBP23.04■■□□□ 1.28
SHROOM1-202ENST00000378676 FOSBP53539 338 aa23.04■■□□□ 1.28
SHROOM1-202ENST00000378676 FGD1P98174 961 aa23.04■■□□□ 1.28
SHROOM1-202ENST00000378676 BRINP3Q76B58 766 aa23.04■■□□□ 1.28
SHROOM1-202ENST00000378676 DHX32Q7L7V1 743 aaKnown RBP23.04■■□□□ 1.28
SHROOM1-202ENST00000378676 FAM200AQ8TCP9 573 aa23.04■■□□□ 1.28
SHROOM1-202ENST00000378676 HSPD1P10809 573 aaKnown RBP23.04■■□□□ 1.28
SHROOM1-202ENST00000378676 SASS6Q6UVJ0 657 aa23.04■■□□□ 1.28
SHROOM1-202ENST00000378676 CLSTN2Q9H4D0 955 aa23.04■■□□□ 1.28
SHROOM1-202ENST00000378676 SLAIN2Q9P270 581 aa23.04■■□□□ 1.28
SHROOM1-202ENST00000378676 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.03■■□□□ 1.28
SHROOM1-202ENST00000378676 H3BQV1 296 aa23.03■■□□□ 1.28
SHROOM1-202ENST00000378676 M0R2C6 588 aa23.03■■□□□ 1.28
SHROOM1-202ENST00000378676 NR1I2O75469 434 aa23.03■■□□□ 1.28
SHROOM1-202ENST00000378676 IFFO2Q5TF58 517 aa23.03■■□□□ 1.28
SHROOM1-202ENST00000378676 DDX60Q8IY21 1712 aaKnown RBP23.03■■□□□ 1.28
SHROOM1-202ENST00000378676 EXOSC10Q01780 885 aaKnown RBP23.03■■□□□ 1.28
SHROOM1-202ENST00000378676 DDX19AQ9NUU7 478 aaKnown RBP23.03■■□□□ 1.28
SHROOM1-202ENST00000378676 E7EWF7 191 aa23.02■■□□□ 1.28
SHROOM1-202ENST00000378676 NKX1-1Q15270 411 aaPredicted RBP23.02■■□□□ 1.28
SHROOM1-202ENST00000378676 RBM43Q6ZSC3 357 aaKnown RBP23.02■■□□□ 1.28
SHROOM1-202ENST00000378676 LUZP1Q86V48 1076 aa23.02■■□□□ 1.28
SHROOM1-202ENST00000378676 BICD2Q8TD16 824 aa23.02■■□□□ 1.28
SHROOM1-202ENST00000378676 CIAO1O76071 339 aa23.01■■□□□ 1.27
SHROOM1-202ENST00000378676 HMGB1P09429 215 aaKnown RBP23.01■■□□□ 1.27
SHROOM1-202ENST00000378676 RBM10P98175 930 aaKnown RBP23.01■■□□□ 1.27
SHROOM1-202ENST00000378676 AGXT2Q9BYV1 514 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms